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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053198 ID=TCONS_00053198|Name=TCONS_00053198|organism=Clytia hemisphaerica|type=transcript|length=926bp
ggggagttttctttaagggtaaaattgcattttaaggggggactgAAAAA
GTAGGCAGAAACCATGAGTATATATTTACATCCGAATAAGAGCTGTTGGT
CGTCAATTTTAAGAAATCGCACTGATTCTGATGGATTTTCGCCAAGGAGA
TGCTTTCAAAATCCTTCGTTTAATTTCGACAATACCAAAAATATAAATGA
CGGCATCAGAACATAAAGCACACGTAATAAGAACGTTGATTAAGAAAGCA
AAATAGGGCGGTGGTGGGTGTTTTCGCATGATGAAAATGAACTCCGTCTG
GTCGGGTATGATCCATAGTAGAATAAAAGTAGCAACTAATAGTGTCGGTA
GATAAAGTCGTTTACGGCGTCCTTTTGCCAACGATTGAGGGCCAGTACCC
GTTGTTTTTGTTGGGCCGGCACTTGACACGTTATGGACCGTAGATATGGT
AGGCCGACTCTTTCGGTTTCGccgtattttttgaaaaaggtaaaCGTACA
CAATGATTGCAACTAAGAGGAAAGCCAATTCGGATGTCGGCCAGAAGAAT
AAAATAATCTGTGCTCGGACACTTTTTTCATTCGTTTGGGCGCACATGAC
GACAGCAAATATACAGGAAATCAACCAACCGACCAAAATAGTGATTTTAG
TCATCTTCCAAGTCCAATATAGAGAATATTTAATATTCAAATAAACCTCG
AAGAATCGATCAACCGTTAATAAGATCATGAAAATGATGTAAGCCATAAA
ACAACCAGAAGTTTGGAAAGTCCAAATCTTAAAAGAAGTTTCAAGGAACC
CGTGTAATGTTAATATACGATGAACGATTTTGCAAACGCATATTAGTAGC
TCGCTGATACTGATTTGAATCAAGTAGCATTTCTGGTTCATAGCCATTCT
GGTGATACGAGTTGAGAATAACATAT Run BLAST on NCBI protein sequence of TCONS_00053198-protein >TCONS_00053198-protein ID=TCONS_00053198-protein|Name=TCONS_00053198-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MLFSTRITRMAMNQKCYLIQISISELLICVCKIVHRILTLHGFLETSFKI
WTFQTSGCFMAYIIFMILLTVDRFFEVYLNIKYSLYWTWKMTKITILVGW
LISCIFAVVMCAQTNEKSVRAQIILFFWPTSELAFLLVAIIVYVYLFQKI
RRNRKSRPTISTVHNVSSAGPTKTTGTGPQSLAKGRRKRLYLPTLLVATF
ILLWIIPDQTEFIFIMRKHPPPPYFAFLINVLITCALCSDAVIYIFGIVE
IKRRILKASPWRKSIRISAIS Run BLAST on NCBI transcript from alignment at scaffold_226:581889..582814 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053198 ID=TCONS_00053198|Name=TCONS_00053198|organism=Clytia hemisphaerica|type=transcript|length=926bp|location=Sequence derived from alignment at scaffold_226:581889..582814 (Clytia hemisphaerica)
ATATGTTATTCTCAACTCGTATCACCAGAATGGCTATGAACCAGAAATGC
TACTTGATTCAAATCAGTATCAGCGAGCTACTAATATGCGTTTGCAAAAT
CGTTCATCGTATATTAACATTACACGGGTTCCTTGAAACTTCTTTTAAGA
TTTGGACTTTCCAAACTTCTGGTTGTTTTATGGCTTACATCATTTTCATG
ATCTTATTAACGGTTGATCGATTCTTCGAGGTTTATTTGAATATTAAATA
TTCTCTATATTGGACTTGGAAGATGACTAAAATCACTATTTTGGTCGGTT
GGTTGATTTCCTGTATATTTGCTGTCGTCATGTGCGCCCAAACGAATGAA
AAAAGTGTCCGAGCACAGATTATTTTATTCTTCTGGCCGACATCCGAATT
GGCTTTCCTCTTAGTTGCAATCATTGTGTACGtttacctttttcaaaaaa
tacggCGAAACCGAAAGAGTCGGCCTACCATATCTACGGTCCATAACGTG
TCAAGTGCCGGCCCAACAAAAACAACGGGTACTGGCCCTCAATCGTTGGC
AAAAGGACGCCGTAAACGACTTTATCTACCGACACTATTAGTTGCTACTT
TTATTCTACTATGGATCATACCCGACCAGACGGAGTTCATTTTCATCATG
CGAAAACACCCACCACCGCCCTATTTTGCTTTCTTAATCAACGTTCTTAT
TACGTGTGCTTTATGTTCTGATGCCGTCATTTATATTTTTGGTATTGTCG
AAATTAAACGAAGGATTTTGAAAGCATCTCCTTGGCGAAAATCCATCAGA
ATCAGTGCGATTTCTTAAAATTGACGACCAACAGCTCTTATTCGGATGTA
AATATATACTCATGGTTTCTGCCTACTTTTTcagtccccccttaaaatgc
aattttacccttaaagaaaactcccc Coding sequence (CDS) from alignment at scaffold_226:581889..582814 >TCONS_00053198 ID=TCONS_00053198|Name=TCONS_00053198|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at scaffold_226:581889..582814 (Clytia hemisphaerica)
ATGTTATTCTCAACTCGTATCACCAGAATGGCTATGAACCAGAAATGCTA
CTTGATTCAAATCAGTATCAGCGAGCTACTAATATGCGTTTGCAAAATCG
TTCATCGTATATTAACATTACACGGGTTCCTTGAAACTTCTTTTAAGATT
TGGACTTTCCAAACTTCTGGTTGTTTTATGGCTTACATCATTTTCATGAT
CTTATTAACGGTTGATCGATTCTTCGAGGTTTATTTGAATATTAAATATT
CTCTATATTGGACTTGGAAGATGACTAAAATCACTATTTTGGTCGGTTGG
TTGATTTCCTGTATATTTGCTGTCGTCATGTGCGCCCAAACGAATGAAAA
AAGTGTCCGAGCACAGATTATTTTATTCTTCTGGCCGACATCCGAATTGG
CTTTCCTCTTAGTTGCAATCATTGTGTACGtttacctttttcaaaaaata
cggCGAAACCGAAAGAGTCGGCCTACCATATCTACGGTCCATAACGTGTC
AAGTGCCGGCCCAACAAAAACAACGGGTACTGGCCCTCAATCGTTGGCAA
AAGGACGCCGTAAACGACTTTATCTACCGACACTATTAGTTGCTACTTTT
ATTCTACTATGGATCATACCCGACCAGACGGAGTTCATTTTCATCATGCG
AAAACACCCACCACCGCCCTATTTTGCTTTCTTAATCAACGTTCTTATTA
CGTGTGCTTTATGTTCTGATGCCGTCATTTATATTTTTGGTATTGTCGAA
ATTAAACGAAGGATTTTGAAAGCATCTCCTTGGCGAAAATCCATCAGAAT
CAGTGCGATTTCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053198-exon-scaffold_226-1491911889:581889..582814 | TCONS_00053198-exon-scaffold_226-1491911889:581889..582814 | Clytia hemisphaerica | exon |
| TCONS_00053198-exon-scaffold_226-1510915933:581889..582814 | TCONS_00053198-exon-scaffold_226-1510915933:581889..582814 | Clytia hemisphaerica | exon |
| TCONS_00053198-exon-scaffold_226-1575043694:581889..582814 | TCONS_00053198-exon-scaffold_226-1575043694:581889..582814 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_226 | supercontig | scaffold_226:581889..582814 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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