TCONS_00053175 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053175
Unique NameTCONS_00053175
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1143

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053175 ID=TCONS_00053175|Name=TCONS_00053175|organism=Clytia hemisphaerica|type=transcript|length=1143bp
TCCCATACATCATTCGAAACACTGTACAGGCTAGTGTCTTTCCTGTGATA
GTCTACGACAAGCATGTATTCcggacccggggggggggggggggcactga
atTTCTAAACCTTCTAGAACTTTATAGTgtactctatcaaaagtacaccc
ttacagtgtatttcgagggtctcgaaaaacctacccttaaggacGGCAAA
TGCCGTGGGttggaccatatgagtgccccctcCCCCGGATTCCGGATGGA
TGACAGACGTTTGCATGCCTGGTTCTACAAAACattatgtaaacaaattc
ttttattaaatttcgttaaatgcacgttctgatataagcaaaaaatgttt
ttcttttcctttctcTGACAAagcttgctccacatccgtgtcaatcaaat
gtgaaaaagttttgaaatcaaagctgatgagtaagcaaacgatattactc
ttatttaaaaacaaaacctttaaatcaacCGTTAAGTTTTAGGTCATTTT
GACCAGAGTGAGTACATGATAAAATTGTGCAGAAATTCATCGGCTGGGCT
AAAATTCATCAATGGTAAAACGAGAACTTTTCAGCTTTAGTGTCTTTAAA
ATGGTACATTGGAACTACTCGAGCTCTCTTCTCAGGCGACGCTACATCCT
TAAAGTGGTACATTGGAACTACTCGAGCTCTCTTCTCAGGCGACGCTACA
TCCTTAAAGTGGTACATTGGTACATTGCGCGATCTCTTCCTAGACGATAC
TGCATCCTTAAAGTGGTACATTGGAACTTTGTGAGCTCTCTTCTCTGGCG
ACGCTCCATCCTTGAAGTGATACATTGGAACTCTCTTGGCAGCCCtagaa
tcaaaatggtagatagGGACCCTCTCAGATGCGGTATCTTTGTAACGGTG
AAGCCAAGGGCTGAATCCGTTTCCATAACCTTCTCGTTTATCAGCGTCAG
CATTTATTTGACTGATGTGTGGTTTGTTTTTCTCACTTCCGCAATCTTCG
ACATCCGGATTACAAGACGAGTACCGGTTCCCTACGGCACGTTTCAGTTC
GCTGGTAGCTGAGTTTACTTGATTGGCTGTATTTAAGATATCATTGTAAA
CGACTTGTAAAGCGTCATCTGACATTATGACGTCACCTTGagc
Run BLAST on NCBI

transcript from alignment at scaffold_226:566106..567356-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053175 ID=TCONS_00053175|Name=TCONS_00053175|organism=Clytia hemisphaerica|type=transcript|length=1251bp|location=Sequence derived from alignment at scaffold_226:566106..567356- (Clytia hemisphaerica)
TCCCATACATCATTCGAAACACTGTACAGGCTAGTGTCTTTCCTGTGATA
GTCTACGACAAGCATGTATTCCGGACCCGGGGGGGGGGGGGGGGCACTGA
ATTTCTAAACCTTCTAGAACTTTATAGTGTACTCTATCAAAAGTACACCC
TTACAGTGTATTTCGAGGGTCTCGAAAAACCTACCCTTAAGGACGGCAAA
TGCCGTGGGTTGGACCATATGAGTGCCCCCTCCCCCGGATTCCGGATGGA
TGACAGACGTTTGCATGCCTGGTTCTACAAAACATTATGTAAACAAATTC
TTTTATTAAATTTCGTTAAATGCACGTTCTGATATAAGCAAAAAATGTTT
TTCTTTTCCTTTCTCTGACAAAGCTTGCTCCACATCCGTGTCAATCAAAT
GTGAAAAAGTTTTGAAATCAAAGCTGATGAGTAAGCAAACGATATTACTC
TTATTTAAAAACAAAACCTTTAAATCAACCGTTAAGTTTTAGGTCATTTT
GACCAGAGTGAGTACATGATAAAATTGTGCAGAAATTCATCGGCTGGGCT
AAAATTCATCAATGGTAAAACGAGAACTTTTCAGCTTTAGTGTCTTTAAA
ATGGTACATTGGAACTACTCGAGCTCTCTTCTCAGGCGACGCTACATCCT
TGAAATGGTACATTGGAACTACTCGAGCTCTCTTTTCAGGCGATGCTACA
TCCTTAAAGTGGTACATTGGAACTACTCGAGCTCTCTTCTCAGGCGACGC
TACATCCTTAAAGTGGTACATTGGTACATTGCGCGATCTCTTCCTAGACG
ATACTGCATCCTTAAAATGGTACATTGGAACTTTGTGAGCTCTCTTCTCT
GGCGACGCTACATCCTTAAAGTGGTACATTGGAACTTTGTGAGCTCTCTT
CTCTGGCGACGCTCCATCCTTGAAGTGATACATTGGAACTCTCTTGGCAG
CCCTAGAATCAAAATGGTAGATAGGGACCCTCTCAGATGCGGTATCTTTG
TAACGGTGAAGCCAAGGGCTGAATCCGTTTCCATAACCTTCTCGTTTATC
AGCGTCAGCATTTATTTGACTGATGTGTGGTTTGTTTTTCTCACTTCCGC
AATCTTCGACATCCGGATTACAAGACGAGTACCGGTTCCCTACGGCACGT
TTCAGTTCGCTGGTAGCTGAGTTTACTTGATTGGCTGTATTTAAGATATC
ATTGTAAACGACTTGTAAAGCGTCATCTGACATTATGACGTCACCTTGAG
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033561XLOC_033561Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053175-exon-scaffold_226-1575043694:566712..567356TCONS_00053175-exon-scaffold_226-1575043694:566712..567356Clytia hemisphaericaexon
TCONS_00053175-exon-scaffold_226-1575043694:566550..566657TCONS_00053175-exon-scaffold_226-1575043694:566550..566657Clytia hemisphaericaexon
TCONS_00053175-exon-scaffold_226-1575043694:566106..566495TCONS_00053175-exon-scaffold_226-1575043694:566106..566495Clytia hemisphaericaexon
TCONS_00053175-exon-scaffold_226-1510915933:566712..567356TCONS_00053175-exon-scaffold_226-1510915933:566712..567356Clytia hemisphaericaexon
TCONS_00053175-exon-scaffold_226-1510915933:566550..566657TCONS_00053175-exon-scaffold_226-1510915933:566550..566657Clytia hemisphaericaexon
TCONS_00053175-exon-scaffold_226-1510915933:566106..566495TCONS_00053175-exon-scaffold_226-1510915933:566106..566495Clytia hemisphaericaexon
TCONS_00053175-exon-scaffold_226-1491911889:566712..567356TCONS_00053175-exon-scaffold_226-1491911889:566712..567356Clytia hemisphaericaexon
TCONS_00053175-exon-scaffold_226-1491911889:566550..566657TCONS_00053175-exon-scaffold_226-1491911889:566550..566657Clytia hemisphaericaexon
TCONS_00053175-exon-scaffold_226-1491911889:566106..566495TCONS_00053175-exon-scaffold_226-1491911889:566106..566495Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_226supercontigscaffold_226:566106..567356 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.0535097	0.0536348	0	0	0	0.215723	0	0	0	0	0	0	0	0	0	0	9.10554	12.4024	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053175 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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