TCONS_00053170 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053170
Unique NameTCONS_00053170
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length894

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053170 ID=TCONS_00053170|Name=TCONS_00053170|organism=Clytia hemisphaerica|type=transcript|length=894bp
TTGAAACctagttttgtttacaaaatttacGGAGCCGGCAAATTGTTTCC
TTTCGACGAACTAGCCAAGATGgCCGACACAGCTACCATCCGTACGCGCA
AGTTCATGACAAACCGCCTTTTGCAAAGGCGTCAGATGATCGTTGATGTC
TTGCATCCAGGAAAAGCCACAGTTTCCAAAGCTGACATTCGAGAAAAGTT
AGCTCGCATGTACAAATCTACTGCTGATTGCATTGTTTGTTTTGGATTCA
AGACCCTTTTCGGAGGTGGCAAAACCACTGGATTTGCTTTGGTTTATGAT
ACACTAGATTACTTGAAAAAGTTTGAACCCAAATACAGAAAACAAAGACT
TGGTCTCATTAAAGTTGAAAAACCTGCACGAAAACAACGCAAAGAAAGAA
AGAACAGAGCCAAGAAAGTCAGAGGAACCGCAAAAGCAGCCATTACCAAG
AAGTAAATATCCTGAATGGTGCATTTTTCCATGTGAAGAGTCAGAAGATC
AAAGGCCTGTTATATCTTGGTGGGAAATACATATCACGAATACTTCAAAA
TGTTTCTCATTactacaaaattttcatttgattaGTGAAGTTCAGATATA
AAATCATGAGTCGAGGTTTCGTATTTACAAGGCTTTCAAAAATTCTTATA
CCTAACTTCAGTCATCAAATGAGAACGAATATTCTTGTTTGTCCTGGCTT
ATTTGGCCGACGATTTGGCTATCgtagcctaatttgcaatagttagCTCA
CACAAAATGTGTGAGCCAACACCTTAATTCTACTTACTAAAGTCTTTCTC
AAAGTAATAcgttaagtggataaattttggcggggattttaaatttggcg
aattttggccaaattccCCAAaataaatcctcgccaaaattttg
Run BLAST on NCBI

protein sequence of TCONS_00053170-protein

>TCONS_00053170-protein ID=TCONS_00053170-protein|Name=TCONS_00053170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
LKPSFVYKIYGAGKLFPFDELAKMADTATIRTRKFMTNRLLQRRQMIVDV
LHPGKATVSKADIREKLARMYKSTADCIVCFGFKTLFGGGKTTGFALVYD
TLDYLKKFEPKYRKQRLGLIKVEKPARKQRKERKNRAKKVRGTAKAAITK
K
Run BLAST on NCBI

transcript from alignment at scaffold_226:229873..234231-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053170 ID=TCONS_00053170|Name=TCONS_00053170|organism=Clytia hemisphaerica|type=transcript|length=4359bp|location=Sequence derived from alignment at scaffold_226:229873..234231- (Clytia hemisphaerica)
TTGAAACCTAGTTTTGTTTACAAAATTTACGGAGCCGGCAAATTGTTTCC
TTTCGACGAACTAGCCAAGATGGTGGGTGAACATTTGAAATTCTTGATAA
CTTCGCTACTTTTCCATCGAACTATATCCAAGGAATCTATCATCCTGACG
CTCATCCTTCTTGCAACTATCATTTCTGTATATTTGAAATTAGATGTCTT
ACCCTTCATTTGATGAATTAATACCATTTCAGTGATTAAAATCGTCTTAT
TTTGTTTTTCAGGCCGACACAGCTACCATCCGTACGCGCAAGTTCATGAC
AAACCGCCTTTTGCAAAGGCGTCAGATGATCGTTGATGTCTTGCATCCAG
GAAAAGCCACAGTTTCCAAAGCTGACATTCGAGAAAAGTTAGCTCGCATG
TACAAATCTACTGCTGATTGCATTGTTTGTTTTGGATTCAAGACCCTTTT
CGGAGGTGGCAAAACCACTGGATTTGCTTTGGTTTATGATACACTAGATT
ACTTGAAAAAGTTTGAACCCAAATACAGAAAACAAAGAGTAAGTGGATGT
CCTACAATGCACCTTGTTATCAAGATTGCCATTGCCATTATAGAATCCTG
ACATTGTAATTTTTGCATTGAATTGGTGTCAGCCACATGATGATATTGGA
TATGTATGGTTTAAAAGGGATGAATTGTTTACTCAGTATAATCAATGTGG
ATAGCACAATTGAATTTTTATCATGGCGGCATTGCTTGGGTTGACAACAA
AATTTATTTTGGTAAATGTATCTTGGTTCACTTGTGCTTGATGATAATGG
AAAGATCTTTGTATGTGTTAAGATTATTTAATGATTAAAATGATAATATA
ATGATCATATACCATGGATAATCCAAGACAGTTAATACCTGTCACAAGCG
AGCAAAGTTATGGGACTTTTTTATTTGAACGGAGTTTGTCAAACAATCAT
CAGCATCACCAATTCAATGCAAAATGTCAGATTGTTGGATATCAAAAATG
CATGGCATTTGTTTTTTAAAAGTTTTTCCATGGCGATTTTTGCACTGGAA
AAAATTATGTTTAAGCCAGGCGTAGTTAATCGATATAATCGATAATCTTG
AGTAATCGATAAATTATCGATAAGTAATCGATGGATTAGATATCGATTAA
CCGATAGAATCGATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCAGCAATCGATTATTTCCAAGCTATCGATTAC
TTATCGATCACATATCGACTACATACAACCTATCGATTACTTATCAATCA
TGTATTGATTGTTAACAATCAACGTTTACTTATCGTTCGTGCATTGATTA
CTTATCAATTATTTACTTATCTTCGCTCATGTATCGTTATCGATTACTTA
TAAATTATTTACTTATCTTCGCTCATGTATCGTTATCGATTATATCGATC
GTGATCGACAGCTGTGATCAATAGCCGATCGATTTTTAATCAATACTTAA
TTTAATCGAAGTATAATCGATCTATAATCGGTAAACAATCAATGACAAAA
TTGATCGATAAATAATCGAGCTTTGAAAAAATCTTTAGTATCGATTACCT
AACGATTCTATCGGTTAATCGATATCTAATCCATCGATTATTTATCGATT
ATTCAAGATTATCGATTATATCGATTAACTACGCCTGGTTTAAGCTGGTA
TAAGTGGAATCTACTTGTCAAGAGAGGTTTTATAACAGTGTTAACAGCAG
TTAGAAAGAGCACAATTGTTATATTAGTCAGGGATTCTAACTACAAGCTT
ATTAATTTACACAAAGATTACATTTTGTGCAAGTTTTTCAAAAAATTACT
GAAAGAAACCTCAAAGAAAAAAATAAAAAATAATTTGATAAAGGGACTGA
TTTGGGAAAAAGTCCCACAAAGACTATTACTTTGTTTTTAGAAAGTTCTT
GTCAAATCTATACACTCAGTCAGTACTTTCTAATTATTGGGTCCGTTCAT
TTTCAAATTTTGAAGCAGGGCTAAGGATAATTTTTTTCACTAATTGAAGG
ATACGTATGAATTTTTGAAAATATTTTCAAAGAAGAGTATTTTTTCCTAA
ATAGCCTGGTGTCCCCTTCATTTTTTGGGCTTCTTCATAGAAACAATTTC
CATGTCCCTATTTTTTTCAAGCCCTCTCTACTAGACACCTGGGAATATTT
GTTTAAGGGTACATTGCATGAATTTCTGTGAAATCGGATTTGATCAACTC
AGAGTAATTGTAATTTTTATTGTTTTCTCTTAGCTTGGTCTCATTAAAGT
TGAAAAACCTGCACGAAAACAACGCAAAGAAAGAAAGAACAGAGCCAAGA
AAGTCAGAGGAACCGCAAAAGCAGCCATTACCAAGAAGGTATGGTTTTAA
TTTATTTATTTGTGTATAAAACCATCTACCAACTATCAACTAATTATAGT
GAATTCATTTGACTATGTATCATTTGAGACATGCTGGTAAGCAAAAGTAG
AATTTTGGCTTAAGGTGCCCCCTTGTAGGCTTATCCTACCCAACACGCTA
CAGTTTGGTAATTGTTATAGAGAATTTTGGATGATGAAAAACCCAACCTT
TATCGTCCACACATACTAAGCACCCATTTTTGCCTAAGTCCCGGGGACGA
GTACCTAAAAAATGGGGAAAAATTGATCGGTATCGGTATTTGAACGAAAA
AATTATCGGTATATCGGTAATTAAGAGAAANTTTTTTTCACTAATTGAAG
GATACGTATGAATTTTTGAAAATATTTTCAAAGAAGAGTATTTTTTCCTA
AATAGCCTGGTGTCCCCTTCATTTTTTGGGCTTCTTCATAGAAACAATTT
CCATGTCCCTATTTTTTTCAAGCCCTCTCTACTAGACACCTGGGAATATT
TGTTTAAGGGTACATTGCATGAATTTCTGTGAAATCGGATTTGATCAACC
AAGAGTAATTGTAATTTTTATTGTTTTCTCTTAGCTTGGTCTCATTAAAG
TTGAAAAACCTGCACGAAAACAACGCAAAGAAAGAAAGAACAGAGCCAAG
AAAGTCAGAGGAACCGCAAAAGCAGCCATTACCAAGAAGGTATGGTTTTA
ATTTATTTATTTGTGTATAAAACCATCTACCAACTATCAACTAATTATAG
TGAATTCATTTGACTATGTATCATTTGAGACATGCTGGTAAGCAAAAGTA
GAATTTTGGCTTAAGGTGCCCCCTTGTAGGCTTATCCTACCCAACACGCT
ACAGTTTGGTAATTGTTATAGAGAATTTTGGATGATGAAAAACCCAACCT
TTATCGTCCACACATACTAAGCACCCATTTTTGCCTAAGTCCCGGGGACG
AGTACCTAAAAAATGGGGAAAAATTGATCGGTATCGGTATTTGAACGAAA
AAATTATCGGTATATCGGTAATTAAGAGAAAAAGTGATCGGTATACACGT
TTTTTTTTTTTTAAGAAACTAGTTTCACCACGCAGCCTCGATGTTTCTTA
AGAAATCGGCCTTTTGAGCCTTAAATGTTTCTTACATGTTTCTAAACTTT
TTAACATAATCAGCCTCGTAGAAGGCTGGGTTGGAAGGTTCTTAAAAAAA
CGAGTTAAAAAATCTTATTTTCTCATTCTCAGCCTCAGCATGTTTCTTAG
ATGTTTCTTAGTTTTTAGGCATTCTGAGCCTCATGTTTCTTAAAAGTGTG
TTTCTTAAAAAAAAAAAAACGTGTATCGGTATTACGAAGTCCCGTACGCC
CCCACTATATTTCCCTTTCAGTAAATATCCTGTTGGTATAAATCAATACT
CTTATATTTCCCTTTCAGTAAATATCCTGAATGGTGCATTTTTCCATGTG
AAGAGTCAGAAGATCAAAGGCCTGTTATATCTTGGTGGGAAATACATATC
ACGAATACTTCAAAATGTTTCTCATTACTACAAAATTTTCATTTGATTAG
TGAAGTTCAGATATAAAATCATGAGTCGAGGTTTCGTATTTACAAGGCTT
TCAAAAATTCTTATACCTAACTTCAGTCATCAAATGAGAACGAATATTCT
TGTTTGTCCTGGCTTATTTGGCCGACGATTTGGCTATCGTAGCCTAATTT
GCAATAGTTAGCTCACACAAAATGTGTGAGCCAACACCTTAATTCTACTT
ACTAAAGTCTTTCTCAAAGTAATACGTTAAGTGGATAAATTTTGGCGGGG
ATTTTAAATTTGGCGAATTTTGGCCAAATTCCCCAAAATAAATCCTCGCC
AAAATTTTG

Coding sequence (CDS) from alignment at scaffold_226:229873..234231-

>TCONS_00053170 ID=TCONS_00053170|Name=TCONS_00053170|organism=Clytia hemisphaerica|type=CDS|length=2280bp|location=Sequence derived from alignment at scaffold_226:229873..234231- (Clytia hemisphaerica)
TAACTGCACGAAAACAACGCAAAGAAAGAAAGAACAGAGCCAAGAAAGTC
AGAGGAACCGCAAAAGCAGCCATTACCAAGAAGCTTGGTCTCATTAAAGT
TGAAAAACGCCGACACAGCTACCATCCGTACGCGCAAGTTCATGACAAAC
CGCCTTTTGCAAAGGCGTCAGATGATCGTTGATGTCTTGCATCCAGGAAA
AGCCACAGTTTCCAAAGCTGACATTCGAGAAAAGTTAGCTCGCATGTACA
AATCTACTGCTGATTGCATTGTTTGTTTTGGATTCAAGACCCTTTTCGGA
GGTGGCAAAACCACTGGATTTGCTTTGGTTTATGATACACTAGATTACTT
GAAAAAGTTTGAACCCAAATACAGAAAACAAAGATTGAAACCTAGTTTTG
TTTACAAAATTTACGGAGCCGGCAAATTGTTTCCTTTCGACGAACTAGCC
AAGATGTAACTGCACGAAAACAACGCAAAGAAAGAAAGAACAGAGCCAAG
AAAGTCAGAGGAACCGCAAAAGCAGCCATTACCAAGAAGCTTGGTCTCAT
TAAAGTTGAAAAACGCCGACACAGCTACCATCCGTACGCGCAAGTTCATG
ACAAACCGCCTTTTGCAAAGGCGTCAGATGATCGTTGATGTCTTGCATCC
AGGAAAAGCCACAGTTTCCAAAGCTGACATTCGAGAAAAGTTAGCTCGCA
TGTACAAATCTACTGCTGATTGCATTGTTTGTTTTGGATTCAAGACCCTT
TTCGGAGGTGGCAAAACCACTGGATTTGCTTTGGTTTATGATACACTAGA
TTACTTGAAAAAGTTTGAACCCAAATACAGAAAACAAAGATTGAAACCTA
GTTTTGTTTACAAAATTTACGGAGCCGGCAAATTGTTTCCTTTCGACGAA
CTAGCCAAGATGTAACTGCACGAAAACAACGCAAAGAAAGAAAGAACAGA
GCCAAGAAAGTCAGAGGAACCGCAAAAGCAGCCATTACCAAGAAGCTTGG
TCTCATTAAAGTTGAAAAACGCCGACACAGCTACCATCCGTACGCGCAAG
TTCATGACAAACCGCCTTTTGCAAAGGCGTCAGATGATCGTTGATGTCTT
GCATCCAGGAAAAGCCACAGTTTCCAAAGCTGACATTCGAGAAAAGTTAG
CTCGCATGTACAAATCTACTGCTGATTGCATTGTTTGTTTTGGATTCAAG
ACCCTTTTCGGAGGTGGCAAAACCACTGGATTTGCTTTGGTTTATGATAC
ACTAGATTACTTGAAAAAGTTTGAACCCAAATACAGAAAACAAAGATTGA
AACCTAGTTTTGTTTACAAAATTTACGGAGCCGGCAAATTGTTTCCTTTC
GACGAACTAGCCAAGATGTAACTGCACGAAAACAACGCAAAGAAAGAAAG
AACAGAGCCAAGAAAGTCAGAGGAACCGCAAAAGCAGCCATTACCAAGAA
GCTTGGTCTCATTAAAGTTGAAAAACGCCGACACAGCTACCATCCGTACG
CGCAAGTTCATGACAAACCGCCTTTTGCAAAGGCGTCAGATGATCGTTGA
TGTCTTGCATCCAGGAAAAGCCACAGTTTCCAAAGCTGACATTCGAGAAA
AGTTAGCTCGCATGTACAAATCTACTGCTGATTGCATTGTTTGTTTTGGA
TTCAAGACCCTTTTCGGAGGTGGCAAAACCACTGGATTTGCTTTGGTTTA
TGATACACTAGATTACTTGAAAAAGTTTGAACCCAAATACAGAAAACAAA
GATTGAAACCTAGTTTTGTTTACAAAATTTACGGAGCCGGCAAATTGTTT
CCTTTCGACGAACTAGCCAAGATGTAACTGCACGAAAACAACGCAAAGAA
AGAAAGAACAGAGCCAAGAAAGTCAGAGGAACCGCAAAAGCAGCCATTAC
CAAGAAGCTTGGTCTCATTAAAGTTGAAAAACGCCGACACAGCTACCATC
CGTACGCGCAAGTTCATGACAAACCGCCTTTTGCAAAGGCGTCAGATGAT
CGTTGATGTCTTGCATCCAGGAAAAGCCACAGTTTCCAAAGCTGACATTC
GAGAAAAGTTAGCTCGCATGTACAAATCTACTGCTGATTGCATTGTTTGT
TTTGGATTCAAGACCCTTTTCGGAGGTGGCAAAACCACTGGATTTGCTTT
GGTTTATGATACACTAGATTACTTGAAAAAGTTTGAACCCAAATACAGAA
AACAAAGATTGAAACCTAGTTTTGTTTACAAAATTTACGGAGCCGGCAAA
TTGTTTCCTTTCGACGAACTAGCCAAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033560XLOC_033560Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053170-proteinTCONS_00053170-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053170-exon-scaffold_226-1575043694:234160..234231TCONS_00053170-exon-scaffold_226-1575043694:234160..234231Clytia hemisphaericaexon
TCONS_00053170-exon-scaffold_226-1575043694:233694..233969TCONS_00053170-exon-scaffold_226-1575043694:233694..233969Clytia hemisphaericaexon
TCONS_00053170-exon-scaffold_226-1575043694:231824..231848TCONS_00053170-exon-scaffold_226-1575043694:231824..231848Clytia hemisphaericaexon
TCONS_00053170-exon-scaffold_226-1575043694:231043..231122TCONS_00053170-exon-scaffold_226-1575043694:231043..231122Clytia hemisphaericaexon
TCONS_00053170-exon-scaffold_226-1575043694:229873..230313TCONS_00053170-exon-scaffold_226-1575043694:229873..230313Clytia hemisphaericaexon
TCONS_00053170-exon-scaffold_226-1510915933:234160..234231TCONS_00053170-exon-scaffold_226-1510915933:234160..234231Clytia hemisphaericaexon
TCONS_00053170-exon-scaffold_226-1510915933:233694..233969TCONS_00053170-exon-scaffold_226-1510915933:233694..233969Clytia hemisphaericaexon
TCONS_00053170-exon-scaffold_226-1510915933:231824..231848TCONS_00053170-exon-scaffold_226-1510915933:231824..231848Clytia hemisphaericaexon
TCONS_00053170-exon-scaffold_226-1510915933:231043..231122TCONS_00053170-exon-scaffold_226-1510915933:231043..231122Clytia hemisphaericaexon
TCONS_00053170-exon-scaffold_226-1510915933:229873..230313TCONS_00053170-exon-scaffold_226-1510915933:229873..230313Clytia hemisphaericaexon
TCONS_00053170-exon-scaffold_226-1491911889:234160..234231TCONS_00053170-exon-scaffold_226-1491911889:234160..234231Clytia hemisphaericaexon
TCONS_00053170-exon-scaffold_226-1491911889:233694..233969TCONS_00053170-exon-scaffold_226-1491911889:233694..233969Clytia hemisphaericaexon
TCONS_00053170-exon-scaffold_226-1491911889:231824..231848TCONS_00053170-exon-scaffold_226-1491911889:231824..231848Clytia hemisphaericaexon
TCONS_00053170-exon-scaffold_226-1491911889:231043..231122TCONS_00053170-exon-scaffold_226-1491911889:231043..231122Clytia hemisphaericaexon
TCONS_00053170-exon-scaffold_226-1491911889:229873..230313TCONS_00053170-exon-scaffold_226-1491911889:229873..230313Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_226supercontigscaffold_226:229873..234231 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
697.705	573.453	837.81	434.205	0.691304	9.16562e-05	0.989687	0.211607	1342.79	976.131	1147.17	1200.2	1370.46	706.797	1254.64	1424.62	873.638	1492.88	669.4	858.773	1956.47	1983.86	1244.16	1171.19	7.51308e-09	1.94061e-06	1134.18	1216.4	1042.71	948.39
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001976Ribosomal_S24e
IPR018098Ribosomal_S24e_CS
IPR012678Ribosomal_L23/L15e_core_dom
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
[Close]
BLAST of TCONS_00053170 vs. Swiss-Prot (Human)
Match: RS24 (40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.657e-42
Identity = 86/119 (72.27%), Postives = 100/119 (84.03%), Query Frame = 1 
Query:   70 MADTATIRTRKFMTNRLLQRRQMIVDVLHPGKATVSKADIREKLARMYKSTADCIVCXXXXXXXXXXXXXXXALVYDTLDYLKKFEPKYRKQRLGLIKVEKPARKQRKERKNRAKKVRG 426
            M DT TIRTRKFMTNRLLQR+QM++DVLHPGKATV K +IREKLA+MYK+T D I  FGF+T FGGGKTTGF ++YD+LDY KK EPK+R  R GL + +K +RKQRKERKNR KKVRG
Sbjct:    1 MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119
The following BLAST results are available for this feature:
BLAST of TCONS_00053170 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS246.657e-4272.2740S ribosomal protein S24 OS=Homo sapiens GN=RPS24... [more]
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