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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053167 ID=TCONS_00053167|Name=TCONS_00053167|organism=Clytia hemisphaerica|type=transcript|length=1734bp
ATTTGTTCGGTGTTGAGTTGTTTCTTTagttataattttttctttcgtaA
AAAATTAGATTTATACATACACGataatataacaataataaGGAGAGGTT
GACGATTGATTCATTCCTAATAATTGAAATTAGTGGAAGTGGAGTAATGA
TAtacagaaaacaaaacaaactaattttcTATATGAAATTCATATTCTTG
TCCCCAGAACTAAGCATCGTCTCAAACGAATATTTTTGTAGCACTGGATC
TAAAGTCAGGGAGGGTAATATTTTACCCAAAAAATGAACCCTGATATTAA
GACGAacgccaaaaaagaaaaactatggTTCTTCTACCACTGTTCAAGAT
TTTAAATCTTAAGTTGCTGATTaattgatttttatttctttaaacCAAAA
CCCACCAAGATTCTCcagattttcctgaatttttttaagacggaaatgta
tttttttaaacttgctGAGATATGCAGCCTTTCTACTGTAATTCCGATTT
ATTTGCGTCGGCAAAAATTCTCAGTTCTATAGTACAGTAAGCAGTTTTAC
GTCGGTAAAAGCCAAATTTACGCCGGCAATAGCCGAATGCTGACGCGAAT
AAGAATGGCTGGATATGAAAGAACGATCCAGGCTAAAAAATAACTAAGAA
AATGCTAAATTAAAGACTATAAAGTAGCTTTTNTGAGAAATTTAACCCAA
ATGAAGTAACTGTTTTTTTATACTGCACTAATAGAATGATGAATTGGTAA
TCCACAAAGGACATTATATCAGAGAATTTTGGTTTCAATTATTCCCCTTG
TCTTTGCATATAACATGACATCTCTAATTAAAATCTAAAGGATTACCTTC
TGATAANTTGTCCGCCTTTGCAGCGATGTGATTAGTACGAGAAAAGataa
attaaagaaaatcaaaagaaatagaTAATGGTAACAACAGTTCAGACATA
AATtgtgttgaaacaacgtttaaAAATCTACCCTCAAAAGCTCACTGTCT
CTCGTGTGATGTGAAAAAGTCCTTATACAAACTGACAAGGTAATAATAAA
TGATGAACAggtttaaattctaaaaaatatacacttaaatcaaaaaaatt
tcaagtaaaggATAGATTTGCTACTAAGGGTTGTCCTGACAATCAtgtat
gatgattttgaattaaaatttccaaaacATATTTCTCGTTGTTGAAAGGG
CATCTTGGAAAATATTGGTTTATGTAAGTTTTTAACAGCTTTAATGAAAT
CTTCTCAATTCAATTTTCTAAGCCTTTCCAAGATACGCTTTCAGGTATTG
CACCAGCTCTGCTAATTATGAAAATCCCACAGAAATCTCCTTCTAAAACT
GTCTAAAGAAGAACAAAATGAGGTTTTTCCATGTAAAAATATTTCCAGCT
ATGGAAAGCCATTTTAATCGACCGTTATACAGACTATTATACAAGCTCAC
TTCGCTGACCAATTTACATGCAGCTTGAAAAGTCCATATTATACCAATAT
CCAACAGCATAGTTATGGTATAACATGAGTGCACTACAAGGCCCTGTAAA
ACACAGCTCTAAAGTCATTTTCGCAACATATTATGTTAATCACAAGAACG
AGATATGTNgcccagcgctagcgatagggcctttcatttgcagcTTTCCG
tccgctgtctgtccgtccgttttggtagaaacggcgcttgaaaccatagt
aacacactttttaattttgccgtttgGAGAGGGA Run BLAST on NCBI transcript from alignment at scaffold_226:170923..172840- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053167 ID=TCONS_00053167|Name=TCONS_00053167|organism=Clytia hemisphaerica|type=transcript|length=1918bp|location=Sequence derived from alignment at scaffold_226:170923..172840- (Clytia hemisphaerica)
ATTTGTTCGGTGTTGAGTTGTTTCTTTAGTTATAATTTTTTCTTTCGTAA
AAAATTAGATTTATACATACACGATAATATAACAATAATAAGGAGAGGTT
GACGATTGATTCATTCCTAATAATTGAAATTAGTGGAAGTGGAGTAATGA
TATACAGAAAACAAAACAAACTAATTTTCTATATGAAATTCATATTCTTG
TCCCCAGAACTAAGCATCGTCTCAAACGAATATTTTTGTAGCACTGGATC
TAAAGTCAGGGAGGGTAATATTTTACCCAAAAAATGAACCCTGATATTAA
GACGAACGCCAAAAAAGAAAAACTATGGTTCTTCTACCACTGTTCAAGAT
TTTAAATCTTAAGTTGCTGATTAATTGATTTTTATTTCTTTAAACCAAAA
CCCACCAAGATTCTCCAGATTTTCCTGAATTTTTTTAAGACGGAAATGTA
TTTTTTTAAACTTGCTGAGATATGCAGCCTTTCTACTGTAATTCCGATTT
ATTTGCGTCGGCAAAAATTCTCAGTTCTATAGTACAGTAAGCAGTTTTAC
GTCGGTAAAAGCCAAATTTACGCCGGCAATAGCCGAATGCTGACGCGAAT
AAGAATGGCTGGATATGAAAGAACGATCCAGGCTAAAAAATAACTAAGAA
AATGCTAAATTAAAGACTATAAAGTAGCTTTTNTGAGAAATTTAACCCAA
ATGAAGTAACTGTTTTTTTATACTGCACTAATAGAATGATGAATTGGTAA
TCCACAAAGGACATTATATCAGAGAATTTTGGTTTCAATTATTCCCCTTG
TCTTTGCATATAACATGACATCTCTAATTAAAATCTAAAGGATTACCTTC
TGATAANTTGTCCGCCTTTGCAGCGATGTGATTAGTACGAGAAAAGATAA
ATTAAAGAAAATCAAAAGAAATAGATAATGGTAACAACAGTTCAGACATA
AATTGTGTTGAAACAACGTTTAAAAATCTACCCTCAAAAGCTCACTGTCT
CTCGTGTGATGTGAAAAAGTCCTTATACAAACTGACAAGGTAATAATAAA
TGATGAACAGGTTTAAATTCTAAAAAATATACACTTAAATCAAAAAAATT
TCAAGTAAAGGATAGATTTGCTACTAAGGGTTGTCCTGACAATCATGTAT
GATGATTTTGAATTAAAATTTCCAAAACATATNGTATAGTCGATTCTTAG
AATTTGAGCTGATTTCAATCCATTTATAGAAAATGGATAATCCCTTATTA
AATTCGTTTTTTATTTATTGCCCCCGCAAGGAGCGCAGCGACTGAGGAGG
CACTCATAGCTTCACGCAATATATTGGACTGGAATCTCGATTTTTTGCGA
ATTGNTCAAAACATATTTCTCGTTGTTGAAAGGGCATCTTGGAAAATATT
GGTTTATGTAAGTTTTTAACAGCTTTAATGAAATCTTCTCAATTCAATTT
TCTAAGCCTTTCCAAGATACGCTTTCAGGTATTGCACCAGCTCTGCTAAT
TATGAAAATCCCACAGAAATCTCCTTCTAAAACTGTCTAAAGAAGAACAA
AATGAGGTTTTTCCATGTAAAAATATTTCCAGCTATGGAAAGCCATTTTA
ATCGACCGTTATACAGACTATTATACAAGCTCACTTCGCTGACCAATTTA
CATGCAGCTTGAAAAGTCCATATTATACCAATATCCAACAGCATAGTTAT
GGTATAACATGAGTGCACTACAAGGCCCTGTAAAACACAGCTCTAAAGTC
ATTTTCGCAACATATTATGTTAATCACAAGAACGAGATATGTNGCCCAGC
GCTAGCGATAGGGCCTTTCATTTGCAGCTTTCCGTCCGCTGTCTGTCCGT
CCGTTTTGGTAGAAACGGCGCTTGAAACCATAGTAACACACTTTTTAATT
TTGCCGTTTGGAGAGGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053167-exon-scaffold_226-1575043694:171663..172840 | TCONS_00053167-exon-scaffold_226-1575043694:171663..172840 | Clytia hemisphaerica | exon |
| TCONS_00053167-exon-scaffold_226-1575043694:170923..171478 | TCONS_00053167-exon-scaffold_226-1575043694:170923..171478 | Clytia hemisphaerica | exon |
| TCONS_00053167-exon-scaffold_226-1510915933:171663..172840 | TCONS_00053167-exon-scaffold_226-1510915933:171663..172840 | Clytia hemisphaerica | exon |
| TCONS_00053167-exon-scaffold_226-1510915933:170923..171478 | TCONS_00053167-exon-scaffold_226-1510915933:170923..171478 | Clytia hemisphaerica | exon |
| TCONS_00053167-exon-scaffold_226-1491911889:171663..172840 | TCONS_00053167-exon-scaffold_226-1491911889:171663..172840 | Clytia hemisphaerica | exon |
| TCONS_00053167-exon-scaffold_226-1491911889:170923..171478 | TCONS_00053167-exon-scaffold_226-1491911889:170923..171478 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_226 | supercontig | scaffold_226:170923..172840 - |
Blast
The following BLAST results are available for this feature:
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