Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053166 ID=TCONS_00053166|Name=TCONS_00053166|organism=Clytia hemisphaerica|type=transcript|length=2779bpRun BLAST on NCBI transcript from alignment at scaffold_226:147858..154336- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053166 ID=TCONS_00053166|Name=TCONS_00053166|organism=Clytia hemisphaerica|type=transcript|length=6479bp|location=Sequence derived from alignment at scaffold_226:147858..154336- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00053166 vs. Swiss-Prot (Human)
Match: IDHC (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Homo sapiens GN=IDH1 PE=1 SV=2) HSP 1 Score: 668.307 bits (1723), Expect = 0.000e+0 Identity = 309/412 (75.00%), Postives = 363/412 (88.11%), Query Frame = 1 Query: 787 KIPGGTVVELDGDEMTRVIWDMIKKQLILPFVDLDIKRYDLGMENRDATDDQVTHEAAAAIKKYNVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPKLVPGWTKPIIIGRHAHADQYKATDFVVPGAGKLEMKFTPSDGSAPMEYVVYDFN-GGGVAMGMYNTDQSIRDFAYSSFNCALEKSYPLYLSTKNTILKKYDGRFKDIFQEIYDKEYKEKFEKAGIWYEHRLIDDMVAYALKVDGGFVWACKNYDGDVQSDTVAQGYGSLGMMTSVLLCPDGKTIEAEAAHGTVTRHYRQHQQGKETSTNPVASIFAWTRGLLHRGKLDSNDKLTQFAKSLEETCVETIESGFMTKDLAICIKGGANKIVRADYLNTIEFIQKIADNLQVKLKAANL 2019 KI GG+VVE+ GDEMTR+IW++IK++LI P+V+LD+ YDLG+ENRDAT+DQVT +AA AIKK+NVG+KCATITPDEKRVEEFKLK+MWKSPNGTIRNILGGTVFREAIICKNIP+LV GW KPIIIGRHA+ DQY+ATDFVVPG GK+E+ +TPSDG+ + Y+V++F GGGVAMGMYN D+SI DFA+SSF AL K +PLYLSTKNTILKKYDGRFKDIFQEIYDK+YK +FE IWYEHRLIDDMVA A+K +GGF+WACKNYDGDVQSD+VAQGYGSLGMMTSVL+CPDGKT+EAEAAHGTVTRHYR +Q+G+ETSTNP+ASIFAWTRGL HR KLD+N +L FA +LEE +ETIE+GFMTKDLA CIKG N + R+DYLNT EF+ K+ +NL++KL A L Sbjct: 4 KISGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEAGFMTKDLAACIKGLPN-VQRSDYLNTFEFMDKLGENLKIKLAQAKL 414 The following BLAST results are available for this feature:
BLAST of TCONS_00053166 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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