TCONS_00053166 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053166
Unique NameTCONS_00053166
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2779

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053166 ID=TCONS_00053166|Name=TCONS_00053166|organism=Clytia hemisphaerica|type=transcript|length=2779bp
CAGAGCGCTGACCTTAAGTTTTATAACTTGCTCTCACTGTTTGGTTTCCG
TACTAAAAACAAAGttgttattgtgaactttgaacatgcttaaaaTAGAG
ATACTTCCACTAACTGCCAGGCTGTCTCAAAGATAGAGCATCATTTTCTT
TGGCGCTAAATTCTGGTCCCATAGTGCCaatatttttgggaaaaaattgt
GGAATGTATCTGACATTGGCAAAATAGCAATGAATTTTCTTGGCAATGAA
TAGTCATCTTTTCAAAAGCTGTGGCAAATAGAATGAGGTGCTTAAATAAG
GTATTGGTGCGGAAAGGGTTAAGGACTTTAtgcaaaattgcaaagttttt
tctgaatttttaaacaatgatgcaaaatagtAATACTCAAAATGTAACTT
CCAGATTTTTaggcaaatttttgccaaatgaTTTCGGACTTTATTCTCAA
AATTGTTTCATTAGATTTTGTTGACATATCTTTAGGAAGgaaggattatt
tttgttaatCCTCTAAAATTAGCATCGTTTGAtctccaaaaaatatttac
caCTAAAACATTCTAAATATAGTATAAAACAAGTTTAACTTCATGTTTTC
AAGCTTACACATCTTTAAGCTATGCTCTGTTAACCTTCCTTTTTCGTTTG
AACAATTTCTTCAACATCATTCAACATGCTTTGACTACCTTTATCAGGTa
gaggtccattaaagtatcaCTCTTGTTTATTTTTAGCTAAGTATAACTTT
TGCACTTCCCTCTCACAACTGGAACTCACAATGGCCAAAATTCCAGgTGG
AACTGTTGTTGAACTCGATGGTGATGAAATGACCAGAGTCATTTGGGATA
TGATCAAGAAGCAGTTGATCCTCCCATTTGTTGATCTGGACATAAAAAGA
TATGACCTTGGTATGGAAAACCGAGATGCAACTGATGATCAAGTAACACA
TGAGGCAGcagcagccattaaaaaataCAATGTTGGAATCAAATGCGCAA
CCATCACTCCTGATGAAAAGAGAGTTGAAGAGTTCAAATTAAAGAAGATG
TGGAAATCACCAAACGGTACAATCCGTAACATTCTTGGTGGTACTGTCTT
CAGGGAAGCCATCATCTGCAAAAATATACCAAAGCTTGTGCCCGGATGGA
CTAAACCAATCATTATTGGCAGACACGCTCATGCTGATCAGTACAAAGCT
ACAGATTTTGTTGTGCCTGGTGCCGGCAAACTTGAAATGAAATTCACACC
ATCTGATGGTAGTGCACCTATGGAGTATGTTGTTTATGATTTCAATGGTG
GTGGTGTTGCTATGGGAATGTACAATACTGATCAGTCAATCCGAGATTTC
GCATACAGCTCTTTCAATTGTGCATTGGAGAAGTCCTACCCATTGTACTT
GAGTACAAAGAACACCATTTTAAAGAAATACGATGGACGTTTCAAGGACA
TCTTCCAAGAAATCTACGATAAAGAATACAAAGAGAAGTTTGAGAAAGCT
GGTATCTGGTATGAGCATCGTCTGATTGATGACATGGTTGCATACGCTTT
GAAAGTTGATGGTGGATTTGTTTGGGCTTGCAAGAACTACGATGGAGATG
TCCAATCTGACACTGTTGCTCAAGGTTATGGATCCCTTGGTATGATGACA
AGTGTTTTGTTATGTCCTGATGGAAAGACCATTGAAGCTGAAGCTGCCCA
TGGAACTGTCACCAGACATTACAGACAACACCAACAAGGAAAAGAAACCT
CAACTAACCCTGTTGCTTCAATCTTTGCATGGACCCGTGGTTTGTTGCAC
CGTGGTAAACTTGATAGTAATGATAAGCTGACTCAGTTTGCAAAATCCTT
AGAAGAGACATGTGTCGAAACTATTGAAAGTGGTTTTATGACAAAAGATT
TGGCTATCTGCATCAAAGGTGGAGCTAACAAaaTTGTTCGTGCTGATTAC
TTGAACACCATTGAATTTATTCAAAAGATTGCTGACAACTTGCAAGTGAA
ACTTAAAGCTGCTAACTTATAAAATGGAACAGATTCAGATAATTATGGGC
TCCAGCTAATATCGTTACTTTAGAAAATAGATTTTTAACCTGATTTTTAT
GCTAGAATGATATAATTTAGTGtttcagtttttcaaatttgttaaCTTGT
CAGATTACTGAAATTTTGTAATTGATTGAATTAAATGCAAATTTATGTTG
ATGTTTTTTTCTCTAATTATTAAGTGGCTGAtttgattttaaacttttat
gaAAACTTTCTAGGCTGAGAGCCTTTATACTTATAAAAAGAAAGCCATTT
TATTAGTCtttaaagtaattattttcaattcttGTAATAATTaatattta
taaaatcaaattcTTAGTCAACAGTACaaattttcttagtttttttagtt
tttttagaaaTGAATTTTTGGGAAGATAATATTATCGTCCGTTAGATTTA
CTGCAGTGCTATTTGTCAAGGCTGTTGCAATTCAAGAGATCTCCTCACAA
TCTTTAtcattcatttattttcaatggAAATGTCTTGGTGTCCACTGAAG
ATCCTTTCAAATCAAAAGTGTTTTCCTTACAGAGCCGGTGTTGTTTTGCA
ATTCTTGGAAAGATTTCGGTACAAAACTTCACTGAAAAGTCATTCCTTTT
CCATTCCTGGAAAATGATTGACCATTTTGTAATTAATTACACATGTATTT
TCTCTTTTAAGAtaacttaaaacaaaagaaataagaaTAAACAAAAAGTG
AATAAGGACACATGACTAAAGAAAgttat
Run BLAST on NCBI

transcript from alignment at scaffold_226:147858..154336-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053166 ID=TCONS_00053166|Name=TCONS_00053166|organism=Clytia hemisphaerica|type=transcript|length=6479bp|location=Sequence derived from alignment at scaffold_226:147858..154336- (Clytia hemisphaerica)
CAGAGCGCTGACCTTAAGTTTTATAACTTGCTCTCACTGTTTGGTTTCCG TACTAAAAACAAAGTTGTTATTGTGAACTTTGAACATGCTTAAAATAGAG ATACTTCCACTAACTGCCAGGCTGTCTCAAAGATAGAGCATCATTTTCTT TGGCGCTAAATTCTGGTCCCATAGTGCCAATATTTTTGGGAAAAAATTGT GGAATGTATCTGACATTGGCAAAATAGCAATGAATTTTCTTGGCAATGAA TAGTCATCTTTTCAAAAGCTGTGGCAAATAGAATGAGGTGCTTAAATAAG GTATTGGTGCGGAAAGGGTTAAGGACTTTATGCAAAATTGCAAAGTTTTT TCTGAATTTTTAAACAATGATGCAAAATAGTAATACTCAAAATGTAACTT CCAGATTTTTAGGCAAATTTTTGCCAAATGATTTCGGACTTTATTCTCAA AATTGTTTCATTAGATTTTGTTGACATATCTTTAGGAAGGAAGGATTATT TTTGTTAATCCTCTAAAATTAGCATCGTTTGATCTCCAAAAAATATTTAC CACTAAAACATTCTAAATATAGTATAAAACAAGTTTAACTTCATGTTTTC AAGCTTACACATCTTTAAGCTATGCTCTGTTAACCTTCCTTTTTCGTTTG AACAATTTCTTCAACATCATTCAACATGCTTTGACTACCTTTATCAGGTA GAGGTCCATTAAAGTATCACTCTTGTTTATTTTTAGCTAAGTATAACTTT TGCACTTCCCTCTCACAACTGGAACTCACAATGGCCAAAATTCCAGGTAA ATAATCTTGTGGCTGTTATAAGTTCTTGTACAGTTTGGAATTTTGAAGCT CTGGATAAGTTTAAATAATATGCCTTTTCTAAGATAAATATACAGGCCAT GTTTCGTGCCTTTATAACATCAAACTATCAGGCACTGCCTCTCCTGAAAT TAGTTTAAGCAGAGTTTTTGGTGGGAATACACTAAAAACCCTTGCCGGTG CTTCTGGAATATAGCTTCTAAGTTGAAATTATTAAGCCTATTATTACTTG TCTTTAAATTTGGTGTTGCAAACATCAAGATGGTGTTAATTTTCTTTTTC TATCTGGAGGCCTGTTTTCACTTCAAAATCAACCAAATGTAAGCTGAAGT TTCATATTATCATCAAAAAAATATTTTCTGATCGACTGACCCAACTTCAA AATCAAGGTGACAGCAAACAAACTTCAGTCCAGACTCATGTAAAGCACTC ATAATTGAACATTTTCTGTCATAATCTTTTATTTTATTTTGTTAGGTGGA ACTGTTGTTGAACTCGATGGTGATGAAATGACCAGGTTATCAAGATTTTT TTGATTTATGACATAATACCCAATTTCTCTGTATATTTTGATGCTTAATT GCTTTTCATTGAATAGACATCTATGAAATTGTTTTGTGTTTTCATTCAAT GAAGAATCTTATATGATGGGATGCCAGGGTTGAATTTTTGAAATTGCGAA AAATTCTTCCTTTCACAACATCATGGTACTACAATAATGCTGCTTAAAGT ATACTCTCTGGAATTCTCTGCCATTTGATCTGGTAAATTTTTGAAACAAA TTCATATTGTACTTTTAGAGTCATTTGGGATATGATCAAGAAGCAGTTGA TCCTCCCATTTGTTGATCTGGACATAAAAAGATATGACCTTGGTATGGAA AACCGAGATGCAACTGATGATCAAGGTTAGAAAATATTCTAAAGTTAAAG GTCAGTGTGGAGCTTTCTCATCAACAAATTGCATTTCATTTAAAACAAAA TCCACCCATTTTCAGTCCGTTTTAGCTATACTACCTTGAGTAGGATTCCA AGTTTATTTTTACTTTCAAGATGGAAATTTTTGCCATTAGCTACAATCTG CAAATGCAAAATTATTATCCCAGAAACTATGATCAATCTTTTTCTTCCAC AGTAACACNCAAAATTATTATCCCAGAAACTATGATCAATCTTTTTTTAC ACAGTAACACATGAGGCAGCAGCAGCCATTAAAAAATACAATGTTGGAAT CAAATGCGCAACCATCACTCCTGATGAAAAGAGAGTTGAAGGTACTCTTA TATTGTTCTAAAGAACAAGCTGTGATGAAGTTGATCCTAAAATAACTGAA TTATTATCAGTTTGAGGGGTATTAATCTTTACAACTCTAAGGTTATACGA ATATCAGAACCTGTTCTTTATATAAGCACTTACAGTATATAACGCACTAC CTTTTAATAATCCTAATGTTTTATGGTATTTTTTATGGAGTTTTTTTGTA GCAGTATATGCAGAATGACTATTTTTGCATTGTTTTTAGAGTTCAAATTA AAGAAGATGTGGAAATCACCAAACGGTACAATCCGTAACATTCTTGGTGG TACTGTCTTCAGGGAAGCCATCATCTGCAAAAATATACCAAAGCTTGTGC CCGGATGGACTAAACCAATCATTATTGGCAGACACGCTCATGCTGATCAG GTAAAACTAAAACTCTAAACATGAAAGGTTTTTTTATCTCCTGAAAGTTC CAGTCCCTGTAACTTATTTAATGAGTGTTGAAACTTCTCCGTCTGTAGAC GGAAATCGCTTTATTTGAGATACAAATACTTGATTTCCGTCTTTCTAGTA AGAATGATTTTGGTAAAATAGCTCACTAAACAAAAGATTTGACAATTTCG TAAAATGATTAGACTTTTCTGTGAGAATTTTGAAGGGTCAATAAATTCAA ACAAGAACTTGCAGTAAGATCTGCTCGGATCTAATTACATTGTGATAATC TTATATTTTCATGCAGTACAAAGCTACAGATTTTGTTGTGCCTGGTGCCG GCAAACTTGAAATGAAATTCACACCATCTGATGGTAGTGCACCTATGGAG TATGTTGTTTATGATTTCAATGGTGGTGGTGTTGCTATGGGAATGTACAA TACTGATCAGGTTATTAGTGTTTGCTTTGTTTTCATGCTGCTCATTTCAT TTACGATGCTGCACTTTTGCTGCACAAAATTGATCGTCAATTGTTAATTA AAAAAACTTTATTGATAAATTTGTTACAAAAAATCAACTTATGTTGTAAG AATCAAAATTACTACCCTTTTGTTTCAGGATGATTTACAAATTTCTTCTT TTTTATACTAGTCAATCCGAGATTTCGCATACAGCTCTTTCAATTGTGCA TTGGAGAAGTCCTACCCATTGTACTTGAGTACAAAGAACACCATTTTAAA GAAATACGATGGACGTTTCAAGGACATCTTCCAAGAAATCTACGATAAAG AATACAAAGAGAAGTTTGAGAAAGCTGGTATCTGGTAAGTTTGATTAATC TTTTTCAAGTGCTTTTTTCCTTATTTTGATTTTGATCAAAATACCTGGTG AACCTTAAAAACTGTCTTATTATTATATATAAAGTCTGAAGGAAGATTAA GGTTGTAACGTTATAGGAGTTGGGCTGCTTACACACACTAACTTAGTTCT TCGAAAATTCAAGTTAAATCTATATCAATGCAACAACTACACATGACTCA AGCCCTGAAATTAGCCAAATTTTTTACAATCTTGTAAAGTAAACGTTTTT AGATAATCTAAGTATGGCAAACAATAGCCCTTGACTCAATAAGTATAAAA GTATATTATAATATCAGGGATGGTCAGCAGATTTTTTAGAAAATGAGATA TAATGCTATGTACGACCCGAAAATTGGAGTTGCTTATAAAAAAATGTGTA CCCAACTTTTTTCTGTAAATAGATTTTGACCAGAGTTTTTGTCGCTTATG TTGTTTAAGCTCAGATTTTCCTCATAAAGCAAAATTGATGTATGAGATCA GCCCTTCAGCAGAACATGTTATTGTGTAGAATTATGTAACTGAATGATCT TCCATAATTCTTAGTCTTGATATATTCTCCTTTTCAAAGGTATGAGCATC GTCTGATTGATGACATGGTTGCATACGCTTTGAAAGTTGATGGTGGATTT GTTTGGGCTTGCAAGAACTACGATGGAGATGTCCAATCTGACACTGTTGC TCAAGGTTTGTTTGAATATATCAAATCATTTCATAATATGTTACAGCTTT TATAGACAGAATTTACTTACAAAAAAAATTCAAAATTGAACGATTTTTTT TATCTAAATTGCCCTCAATACCATTTAATTTTGTTTTCAATGGTCTTGAT TGTTTACTAGTATTTTAAGTATTTGAGAATGCATGAATAGAATAGAAACG AATCTCTTTCTATATTATTCTTAGGTTATGGATCCCTTGGTATGATGACA AGTGTTTTGTTATGTCCTGATGGAAAGACCATTGAAGCTGAAGCTGCCCA TGGAACTGTCACCAGACATTACAGACAACACCAACAAGGAAAAGAAACCT CAACTAACCCTGTTGGTAAGAATAAGAGGATCATTTCAGTTCTATCCAGA ATATCTATCTCTGTCTATCTATATATTGAAAATACTTTATTTTAATCAAG TTAAAAAAAATTTCATGCTAGGAGTGCTATAGTTTTTCATCTTTACTATT ATGTTAGACCTATCTTGAAATATGTTCGTTTTGCACTGACTTGATGACAA TTTTTCCTTATCAACTAAGTAGCATATTTGATAGCTTTTATTATTAAAAA CGCCAAGTTTGTTTATTAAAACTTCAAATCATCTCAATCTACTTAAACGA TCAAATGAAAAAGTTCAATTTTTAAGTTCAATTTTTTTTTAACTAACTGA AACTCTCAATTCATTTTAGCTTCAATCTTTGCATGGACCCGTGGTTTGTT GCACCGTGGTAAACTTGATAGTAAGTTTGTCAAAATCTTTTATAAAAGCA CCTGTTATTGATTTCCTGACCAATAACTATTATTGATATGATAATAATAT CCCTTCCAGGGAGAAAGAGTGGCGCCCTCTACCTTCGGTTAGATAGCTTT GAAATGAGGACCCTTCGGGTCGTCTCCGTCTGCAGTCACAGACTTACTTT GATATCCCTTTCTTAGTGGTTAATTATACATAAGATACTTAACATTGTTC GACCCAAATTTCTCTTTGTCAGACCCAAAAGCCTCAAGCGAAAGCAATCC TTATCAGATATTTTTGTCCTGTTATTTGTTATTTTTGTAAGAAAATGATG TTCTCTTCCTTCAGGTAATGATAAGCTGACTCAGTTTGCAAAATCCTTAG AAGAGACATGTGTCGAAACTATTGAAAGTGGTTTTATGACAAAAGATTTG GCTATCTGCATCAAAGGTGGAGCTAACAAGTATGTATTTATTTGACCTTT TCTCTCTTAACTCTTGATCCACATTCAATATCTCAATATATTCTTCGATG GTTTTTTATAGTGACCAAAGCTCAGCATGAGATAGGTTAGGATAGATCAA TGGTGGAATTTAACTTATTAAATCTAAGATTTAGACACCCTTAAACTTAT TTGTAAAACAGCTACTACTTAAGTGAGTGCCATCAAGCTATTGTTTGTAA ACTGCCTTTTTCCCCCGTAATGCTTCTTGCAATCACCCTTTTACTCTTCA TATGTGTAGAGGAAAAATTAAAAATAGTAATAGCCACTTTCTTTTTCACT GTTCAACACATGCCTTTTTTTCAAATTCTAGAATTGTTCGTGCTGATTAC TTGAACACCATTGAATTTATTCAAAAGATTGCTGACAACTTGCAAGTGAA ACTTAAAGCTGCTAACTTATAAAATGGAACAGATTCAGATAATTATGGGC TCCAGCTAATATCGTTACTTTAGAAAATAGATTTTTAACCTGATTTTTAT GCTAGAATGATATAATTTAGTGTTTCAGTTTTTCAAATTTGTTAACTTGT CAGATTACTGAAATTTTGTAATTGATTGAATTAAATGCAAATTTATGTTG ATGTTTTTTTCTCTAATTATTAAGTGGCTGATTTGATTTTAAACTTTTAT GAAAACTTTCTAGGCTGAGAGCCTTTATACTTATAAAAAGAAAGCCATTT TATTAGTCTTTAAAGTAATTATTTTCAATTCTTGTAATAATTAATATTTA TAAAATCAAATTCTTAGTCAACAGTACAAATTTTCTTAGTTTTTTTAGTT TTTTTAGAAATGAATTTTTGGGAAGATAATATTATCGTCCGTTAGATTTA CTGCAGTGCTATTTGTCAAGGCTGTTGCAATTCAAGAGATCTCCTCACAA TCTTTATCATTCATTTATTTTCAATGGAAATGTCTTGGTGTCCACTGAAG ATCCTTTCAAATCAAAAGTGTTTTCCTTACAGAGCCGGTGTTGTTTTGCA ATTCTTGGAAAGATTTCGGTACAAAACTTCACTGAAAAGTCATTCCTTTT CCATTCCTGGAAAATGATTGACCATTTTGTAATTAATTACACATGTATTT TCTCTTTTAAGATAACTTAAAACAAAAGAAATAAGAATAAACAAAAAGTG AATAAGGACACATGACTAAAGAAAGTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033557XLOC_033557Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053166-exon-scaffold_226-1575043694:153541..154336TCONS_00053166-exon-scaffold_226-1575043694:153541..154336Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1575043694:153002..153041TCONS_00053166-exon-scaffold_226-1575043694:153002..153041Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1575043694:152612..152718TCONS_00053166-exon-scaffold_226-1575043694:152612..152718Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1575043694:152246..152332TCONS_00053166-exon-scaffold_226-1575043694:152246..152332Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1575043694:151837..151997TCONS_00053166-exon-scaffold_226-1575043694:151837..151997Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1575043694:151377..151520TCONS_00053166-exon-scaffold_226-1575043694:151377..151520Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1575043694:151003..151175TCONS_00053166-exon-scaffold_226-1575043694:151003..151175Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1575043694:150282..150397TCONS_00053166-exon-scaffold_226-1575043694:150282..150397Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1575043694:149922..150062TCONS_00053166-exon-scaffold_226-1575043694:149922..150062Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1575043694:149517..149567TCONS_00053166-exon-scaffold_226-1575043694:149517..149567Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1575043694:149058..149172TCONS_00053166-exon-scaffold_226-1575043694:149058..149172Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1575043694:147858..148705TCONS_00053166-exon-scaffold_226-1575043694:147858..148705Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1510915933:153541..154336TCONS_00053166-exon-scaffold_226-1510915933:153541..154336Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1510915933:153002..153041TCONS_00053166-exon-scaffold_226-1510915933:153002..153041Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1510915933:152612..152718TCONS_00053166-exon-scaffold_226-1510915933:152612..152718Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1510915933:152246..152332TCONS_00053166-exon-scaffold_226-1510915933:152246..152332Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1510915933:151837..151997TCONS_00053166-exon-scaffold_226-1510915933:151837..151997Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1510915933:151377..151520TCONS_00053166-exon-scaffold_226-1510915933:151377..151520Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1510915933:151003..151175TCONS_00053166-exon-scaffold_226-1510915933:151003..151175Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1510915933:150282..150397TCONS_00053166-exon-scaffold_226-1510915933:150282..150397Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1510915933:149922..150062TCONS_00053166-exon-scaffold_226-1510915933:149922..150062Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1510915933:149517..149567TCONS_00053166-exon-scaffold_226-1510915933:149517..149567Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1510915933:149058..149172TCONS_00053166-exon-scaffold_226-1510915933:149058..149172Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1510915933:147858..148705TCONS_00053166-exon-scaffold_226-1510915933:147858..148705Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1491911889:153541..154336TCONS_00053166-exon-scaffold_226-1491911889:153541..154336Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1491911889:153002..153041TCONS_00053166-exon-scaffold_226-1491911889:153002..153041Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1491911889:152612..152718TCONS_00053166-exon-scaffold_226-1491911889:152612..152718Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1491911889:152246..152332TCONS_00053166-exon-scaffold_226-1491911889:152246..152332Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1491911889:151837..151997TCONS_00053166-exon-scaffold_226-1491911889:151837..151997Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1491911889:151377..151520TCONS_00053166-exon-scaffold_226-1491911889:151377..151520Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1491911889:151003..151175TCONS_00053166-exon-scaffold_226-1491911889:151003..151175Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1491911889:150282..150397TCONS_00053166-exon-scaffold_226-1491911889:150282..150397Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1491911889:149922..150062TCONS_00053166-exon-scaffold_226-1491911889:149922..150062Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1491911889:149517..149567TCONS_00053166-exon-scaffold_226-1491911889:149517..149567Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1491911889:149058..149172TCONS_00053166-exon-scaffold_226-1491911889:149058..149172Clytia hemisphaericaexon
TCONS_00053166-exon-scaffold_226-1491911889:147858..148705TCONS_00053166-exon-scaffold_226-1491911889:147858..148705Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_226supercontigscaffold_226:147858..154336 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0710893 0.137891 0 0.318557 0.207268 0.244585 0 0.37054 0.0598698 0.220561 0.212764 0.375075 0.187006 0.0979504 0.0795114 0.0859129 0.0527208 0.0541572 0 0.0774438 0.406038 0.783114 0.0806215 0.0734953 0.329857 0 0 0.205384 0.0778098 0.312092
Blast
BLAST of TCONS_00053166 vs. Swiss-Prot (Human)
Match: IDHC (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Homo sapiens GN=IDH1 PE=1 SV=2)

HSP 1 Score: 668.307 bits (1723), Expect = 0.000e+0
Identity = 309/412 (75.00%), Postives = 363/412 (88.11%), Query Frame = 1
Query:  787 KIPGGTVVELDGDEMTRVIWDMIKKQLILPFVDLDIKRYDLGMENRDATDDQVTHEAAAAIKKYNVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPKLVPGWTKPIIIGRHAHADQYKATDFVVPGAGKLEMKFTPSDGSAPMEYVVYDFN-GGGVAMGMYNTDQSIRDFAYSSFNCALEKSYPLYLSTKNTILKKYDGRFKDIFQEIYDKEYKEKFEKAGIWYEHRLIDDMVAYALKVDGGFVWACKNYDGDVQSDTVAQGYGSLGMMTSVLLCPDGKTIEAEAAHGTVTRHYRQHQQGKETSTNPVASIFAWTRGLLHRGKLDSNDKLTQFAKSLEETCVETIESGFMTKDLAICIKGGANKIVRADYLNTIEFIQKIADNLQVKLKAANL 2019
            KI GG+VVE+ GDEMTR+IW++IK++LI P+V+LD+  YDLG+ENRDAT+DQVT +AA AIKK+NVG+KCATITPDEKRVEEFKLK+MWKSPNGTIRNILGGTVFREAIICKNIP+LV GW KPIIIGRHA+ DQY+ATDFVVPG GK+E+ +TPSDG+  + Y+V++F  GGGVAMGMYN D+SI DFA+SSF  AL K +PLYLSTKNTILKKYDGRFKDIFQEIYDK+YK +FE   IWYEHRLIDDMVA A+K +GGF+WACKNYDGDVQSD+VAQGYGSLGMMTSVL+CPDGKT+EAEAAHGTVTRHYR +Q+G+ETSTNP+ASIFAWTRGL HR KLD+N +L  FA +LEE  +ETIE+GFMTKDLA CIKG  N + R+DYLNT EF+ K+ +NL++KL  A L
Sbjct:    4 KISGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEAGFMTKDLAACIKGLPN-VQRSDYLNTFEFMDKLGENLKIKLAQAKL 414          
The following BLAST results are available for this feature:
BLAST of TCONS_00053166 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IDHC0.000e+075.00Isocitrate dehydrogenase [NADP] cytoplasmic OS=Hom... [more]
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