|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053164 ID=TCONS_00053164|Name=TCONS_00053164|organism=Clytia hemisphaerica|type=transcript|length=5336bpRun BLAST on NCBI protein sequence of TCONS_00053164-protein >TCONS_00053164-protein ID=TCONS_00053164-protein|Name=TCONS_00053164-protein|organism=Clytia hemisphaerica|type=polypeptide|length=934bp MIYALPKIPLVIFLVVFCYCFSDTGVLAADGSELWSRIEKAALKNQNRKGRun BLAST on NCBI transcript from alignment at scaffold_226:621245..639678+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053164 ID=TCONS_00053164|Name=TCONS_00053164|organism=Clytia hemisphaerica|type=transcript|length=18434bp|location=Sequence derived from alignment at scaffold_226:621245..639678+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_226:621245..639678+ >TCONS_00053164 ID=TCONS_00053164|Name=TCONS_00053164|organism=Clytia hemisphaerica|type=CDS|length=47685bp|location=Sequence derived from alignment at scaffold_226:621245..639678+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053164 vs. Swiss-Prot (Human)
Match: TLL1 (Tolloid-like protein 1 OS=Homo sapiens GN=TLL1 PE=1 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 2.084e-40 Identity = 96/277 (34.66%), Postives = 138/277 (49.82%), Query Frame = 3
Query: 1998 CGGELMGTKGQFHSPNYPANYPPHTNCTWIIRGNKNSQIVLQIKSFDFEKFFDEPCKFDYLEVRD-KEHNNRLFGKFCGSRIPGPIISESNSLWVTMITDGQDNKAGFRASWEIKEKQ-------------------------------------PEGCGGLQTGMQGSFNSPNFPAKYPPEKTCSWKIDVPEGYFIQMKFIRFHLEKHSICKYDSVVIKDGWGRKPSLLGRYCGVNPIRESIKTRSNKAEINFVSDHSGEYSGFKLQWKAYKKEIS 2714
CGGE+ +GQ SPNYP +Y P C W I +++ + L +SF+ E+ + C +DYLEVRD N+ L G+FCG P I S SN+LW+ ++DG NKAGF A++ +E + CGGL T + G+ +P +P +YPP K C W++ P Y I +KF F LE + +CKYD V I G + L G++CG + E I ++ N I F SD++ GFK + + K E S
Sbjct: 462 CGGEIRKNEGQIQSPNYPDDYRPMKECVWKITVSESYHVGLTFQSFEIERH--DNCAYDYLEVRDGTSENSPLIGRFCGYDKPEDIRSTSNTLWMKFVSDGTVNKAGFAANFFKEEDECAKPDRGGCEQRCLNTLGSYQCACEPGYELGPDRRSCEAACGGLLTKLNGTITTPGWPKEYPPNKNCVWQVVAPTQYRISVKFEFFELEGNEVCKYDYVEIWSGLSSESKLHGKFCGAE-VPEVITSQFNNMRIEFKSDNTVSKKGFKAHFFSDKDECS 735 HSP 2 Score: 154.066 bits (388), Expect = 1.717e-37 Identity = 89/201 (44.28%), Postives = 113/201 (56.22%), Query Frame = 3
Query: 651 AAIVFKRRLWPGAVIPYTFSRTLEFIENAKQTIKGAMFEWEKNTCIRFSPRENEKDYVEFAMN-YGCNADVGRRG-GRQIVSLGDGCLHTSVVVHEIGHVIGFWHEQNRPDRDEHVKIFTDNIMDQYKEAFAKFNPYRITSLQVAYDYHSIMHYGRKAFTKNG-KDTIVP-KDETIF--TLGN-DRLSDLDIKQANLLYQC 1232
AA R+WPG VIPY F + + K AM WEK+TC+ F R +E+ Y+ F GC + VGRRG G Q +S+G C +VVHE+GHVIGFWHE RPDRD HV I +NI + F K P + SL YD+ SIMHY R F++ DTI+P +D+ +G RLS DI QA LY+C
Sbjct: 148 AATSRTERIWPGGVIPYVIGGN--FTGSQRAMFKQAMRHWEKHTCVTFIERSDEESYIVFTYRPCGCCSYVGRRGNGPQAISIGKNCDKFGIVVHELGHVIGFWHEHTRPDRDNHVTIIRENIQPGQEYNFLKMEPGEVNSLGERYDFDSIMHYARNTFSRGMFLDTILPSRDDNGIRPAIGQRTRLSKGDIAQARKLYRC 346 HSP 3 Score: 148.673 bits (374), Expect = 9.125e-36 Identity = 89/281 (31.67%), Postives = 133/281 (47.33%), Query Frame = 3
Query: 1911 NNPKPKFGGRYCSGKPYQDKECNTQSCPKCGGELMGTKGQFHSPNYPANYPPHTNCTWIIRGNKNSQIVLQIKSFDFEKFFDEPCKFDYLEVRDKE-HNNRLFGKFCGSRIPGPIISESNSLWVTMITDGQDNKAGFRASWEIKEKQPEGCGGLQTGMQGSFNSPNFPAKYPPEKTCSWKIDVPEGYFIQMKFIRFHLEKHSICKYDSVVIKDGWGRKPSLLGRYCGVNPIRESIKTRSNKAEINFVSDHSGEYSGFKLQWKAYKKEISNTLPEVKKNQER 2750
N +P G R K + CP CG L + G SP +P YP +T+C W + +IVL + D K C +DY+EVRD + L G+FCG ++P + S + +W+ + GF A +E CGG +G SPN+P Y P K C WKI V E Y + + F F +E+H C YD + ++DG L+GR+CG + E I++ SN + FVSD + +GF + +K+E P+ ++R
Sbjct: 320 NGIRPAIGQRTRLSKGDIAQARKLYRCPACGETLQESNGNLSSPGFPNGYPSYTHCIWRVSVTPGEKIVLNFTTMDLYK--SSLCWYDYIEVRDGYWRKSPLLGRFCGDKLPEVLTSTDSRMWIEFRSSSNWVGKGFAAVYEAI------CGGEIRKNEGQIQSPNYPDDYRPMKECVWKITVSESYHVGLTFQSFEIERHDNCAYDYLEVRDGTSENSPLIGRFCGYDK-PEDIRSTSNTLWMKFVSDGTVNKAGFAANF--FKEEDECAKPDRGGCEQR 589 HSP 4 Score: 135.191 bits (339), Expect = 1.277e-31 Identity = 95/318 (29.87%), Postives = 148/318 (46.54%), Query Frame = 3
Query: 1845 WKSWSRCTKECGGGKKRRLRLCNNPKPKFGGRYCSGKPYQDKECNTQSC-PKCGGELMGTKGQFHSPNYPANYPPHTNCTWIIRGNKNSQIVLQIKSFDFEKFFDEPCKFDYLEV-RDKEHNNRLFGKFCGSRIPGPIISESNSLWVTMITDGQDNKAGFRAS-WEIKEKQPEGCGGLQ---TGMQGSF---------------------------------NSPNFPAKYPPEKTCSWKIDVPEGYFIQMKFIRFHLEKHSICKYDSVVIKDGWGRKPSLLGRYCGVNPIRESIKTRSNKAEINFVSDHSGEYSGFK 2681
+K C K GG ++R C N G C+ +P + + +SC CGG L G +P +P YPP+ NC W + +I ++ + F+ E +E CK+DY+E+ ++L GKFCG+ +P I S+ N++ + +D +K GF+A + K++ + GG Q GS+ SPN+P KYP K C+W+I G+ I++ F F +E+H C YD + + DG K +LGR CG N I + + NK + FVSD S + GF+
Sbjct: 572 FKEEDECAKPDRGGCEQR---CLN---TLGSYQCACEPGYELGPDRRSCEAACGGLLTKLNGTITTPGWPKEYPPNKNCVWQVVAPTQYRISVKFEFFELEG--NEVCKYDYVEIWSGLSSESKLHGKFCGAEVPEVITSQFNNMRIEFKSDNTVSKKGFKAHFFSDKDECSKDNGGCQHECVNTMGSYMCQCRNGFVLHDNKHDCKEAECEQKIHSPSGLITSPNWPDKYPSRKECTWEISATPGHRIKLAFSEFEIEQHQECAYDHLEVFDGETEKSPILGRLCG-NKIPDPLVATGNKMFVRFVSDASVQRKGFQ 880 HSP 5 Score: 114.775 bits (286), Expect = 2.100e-25 Identity = 67/241 (27.80%), Postives = 118/241 (48.96%), Query Frame = 3
Query: 1995 KCGGELMGTKGQFHSPNYPANYPPHTNCTWIIRGNKNSQIVLQIKSFDFEKFFDEPCKFDYLEVRDKE-HNNRLFGKFCGSRIPGPIISESNSLWVTMITDGQDNKAGFRASWEIKEKQPEGCGG---LQTGMQGSFNSPNF-PAKYPPEKTCSWKIDVPEGYFIQMKFIRFHLEKHSICKYDSVVIKDGWGRKPSLLGRYCGVNPIRESIKTRSNKAEINFVSDHSGEYSGFKLQWKAYK 2702
+C ++ G SPN+P YP CTW I +I L F+ E+ + C +D+LEV D E + + G+ CG++IP P+++ N ++V ++D + GF+A+ + CGG ++ + ++ F YP + C W + G +++ F F +E+ + C YD V + DG LGR+CG P E I + + I+F +D + GF +++K+ +
Sbjct: 773 ECEQKIHSPSGLITSPNWPDKYPSRKECTWEISATPGHRIKLAFSEFEIEQH--QECAYDHLEVFDGETEKSPILGRLCGNKIPDPLVATGNKMFVRFVSDASVQRKGFQATHSTE------CGGRLKAESKPRDLYSHAQFGDNNYPGQVDCEWLLVSERGSRLELSFQTFEVEEEADCGYDYVELFDGLDSTAVGLGRFCGSGP-PEEIYSIGDSVLIHFHTDDTINKKGFHIRYKSIR 1004 The following BLAST results are available for this feature:
BLAST of TCONS_00053164 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.