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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053112 ID=TCONS_00053112|Name=TCONS_00053112|organism=Clytia hemisphaerica|type=transcript|length=553bp
CAAAGCGAGTTGATCAATTTAAAATGGCGTCATGAGATAGCGCCAGGGCT
TCATCACAGGGCATCAAAGCTTACGAGGTTTTCAGacATAATTTTCATCA
CCTGTCTATCAATCATTCAATTGTCGATATCTTACCAAATAGTCAACCAA
ATTATAATGTTAGTCCAAAAGAAGTGGTGGGTTTTAACTTTGCATTATGG
AGTAGACGTGGTCGTGTACAATGATCTTAGACTGGGCAACCATAAAATGG
AGGCGCGGTTTATCATTAGATGTTTTCAACAAAATCCAGAACATTTCACA
TGAacTTTATTGTTGAGCATTGTTCATTGATGGAAAAGATGGTGTTAAAA
GCAGACCTGGTATCATGGAACAAAGAGTATAATTTTAGtttaaaaatcta
aagaatTGACATGACAATGTAAGAAGAATACATTATtgcaatgttttcat
ttttaatggtttttacTGGTTGAGTGTGTGTCACGCAGGTACTCTTGGGT
TCCTAATAAACGAGGGGtcggaaaatatttcaaaaattaataaacgggca
GAC Run BLAST on NCBI protein sequence of TCONS_00053112-protein >TCONS_00053112-protein ID=TCONS_00053112-protein|Name=TCONS_00053112-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
QSELINLKWRHEIAPGLHHRASKLTRFSDIIFITCLSIIQLSISYQIVNQ
IIMLVQKKWWVLTLHYGVDVVVYNDLRLGNHKMEARFIIRCFQQNPEHFT Run BLAST on NCBI transcript from alignment at scaffold_226:192758..196220+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053112 ID=TCONS_00053112|Name=TCONS_00053112|organism=Clytia hemisphaerica|type=transcript|length=3463bp|location=Sequence derived from alignment at scaffold_226:192758..196220+ (Clytia hemisphaerica)
CAAAGCGAGTTGATCAATTTAAAATGGCGTCATGAGATAGCGCCAGGGCT
TCATCACAGGGCATCAAAGCTTACGAGGTTTTCAGGTAAATCTTCTGTCA
GCAGTGCTAATATTATCATAAACGAAAGGTTAAATAATCGGACTACTGTT
ATGGCAAGTTTTGAATTACCGTTCTCTTCGATGCAACAGATTAAAACCTT
ACTTTTGGAACTCGAGTTAATCATTAATGACGTCATTGCACGTATTATAA
TCAAACTCATTCTTCCAGTATGATTTTAAAACCTCAGACCCATAAAAAGA
TGAATCATAGATATTTCCAATAATGATCAATAGCTGCAATCAActgtttt
caaaagataaaaaacattaCAGTAATCTACTATAAACCTATAATGAACTC
AAAATCCTAAAATTCTTTGATCTTGTTGAAACACTCAATATTATGTTCAT
ATACCGCTACCTGAATAGATACCTTCCTTCTGACTGTCTTTCTACTTTTA
CCTTTTCTGTAATTCCTCATGACATTGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTTT
ATTAGGTTGCACCATTTGTAATTAGGTTTCTAAACTTGGTGTCCCTTCCT
TcgggtaaatatatgttttgaattgaattgaattgaattgaactGTAAAA
ATTCTTACCCAACCCAACACAACAAGTATAGAAGATATTTGAATACTGCT
TCTTGGATGGTAAGTTTATTAGCTTGGTTTACCTTTGCAAATAAATCTAT
CCTAATAAATCCCTGAACAAAATTTGGGCGTGTTCTCGAGAGCCGCTTTT
TTCCGAACATTTTATCGCCCTTTCCAGACGGTTGTAATCGATATAGCTAA
TCGATAATTAATTGAGGAGGTATATCCATTAGAATCGATCGACGTCTAAA
AAATCATGAATATCGATTATTAGCTATCGATGATATCGATCAGATATCAA
TCATATTGATCATATCAATTAGATATCGGTTCCATCGATCAGCTATGGAG
TATATCGATTGGCTATCAATTTCTAATCGCTATTATCGATTATATCTCGT
ATAATCGATTATCGATTAAAATTCTATAAGCTAGGGAGGTCGTTCGTCAG
GATTTTTGCCACGGCAAAAAGAGAAAAACCCAAAACCAAAATTCAATCCA
TTTAAACTTACTTTTCTACAATCCAAATTTGTTCATTCTTCattcagtct
gggaaatcctctcaatacaccgtttaggagtctcgctatcttcacggtac
tccattgcagaggccggtaaaaatggtaggtaaaaatgcacactttagta
ctgtgaaaggttagaggaatgtaaacattgtgaatttctTTCTCTccttt
taaagagaatgatttagatatttgaacatgatatcaatgataatttataa
gtctctcctgaaaatttcacaaaaattcatcaagaggaagagaagttatg
attaaaaggagttctttacctaccgtttttctgctatgtttccttatgag
aaccagatgtttacctaccgtttttttacggaggagagtgaattttNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNttttttacggaggagagtgaattt
tccgtggtcgctaaaatcaaaacaatggaaaattggattgacgcgtgcgc
agtcgacactcctaaacggtgtattgcacgcttatgttccgaggccgtaa
gcgcgatatgatttttcagtttgaatttatgtctaatgttattgattttt
gaagtgcttgttctaagagatgagagaatataattatttttagttttcaa
gagaagcaaatttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccgccccccccccc
cccccaccaccACAATCTCATAACTTTTTacaccatttttttcaaaaaaa
atctctgGCATAAAACagcatcaaaatttatttggtCTTCTTATAAACTT
ACATCCACATCTGCTAATGAGTATTATGTAGAAGAAATCTGATAtaccaa
atcaaatcaaatggaCATATACATTTATACATTTTACATGTAGAAACCTC
TGAAAGTCATGattaagtttttgttttttcagacATAATTTTCATCACCT
GTCTATCAATCATTCAATTGTCGATATCTTACCAAATAGTCAACCAAATT
ATAATGTTAGTCCAAAAGAAGTGGTGGGTTTTAACTTTGCATTATGGAGT
AGACGTGGTCGTGTACAATGATCTTAGACTGGGCAACCATAAAATGGAGG
CGCGGTTTATCATTAGATGTTTTCAACAAAATCCAGAACATTTCACATGA
GTGAGTATTTAAGTgtctatttaaaatttttatctatttttacaGTAGCA
CTTTCAGTGGCTGAAATAATGGTCAGACATTGTTCGACCCCAATTGCTGG
AATGTTTTACCCAAATAAATAATGTCCCTTTCCTTCcaagtttttgtttg
ttgttaTCTTTCGATATCCCTATCTTATATCGGACTCGTATATCACCGCA
CTGACTTATACCGTTTTTCTACTATACAACATTGTTCCTTTGCAGGGCCT
TCACACCCTCCGGGCTTCTTGTTTGATGAAAATGGATCatttgatgaaat
attttttgtttagacTTTATTGTTGAGCATTGTTCATTGATGGAAAAGAT
GGTGTTAAAAGCAGACCTGGTATCATGGAACAAAGAGTATAATTTTAGtt
taaaaatctaaagaatTGACATGACAATGTAAGAAGAATACATTATtgca
atgttttcatttttaatggtttttacTGGTTGAGTGTGTGTCACGCAGGT
ACTCTTGGGTTCCTAATAAACGAGGGGtcggaaaatatttcaaaaattaa
taaacgggcaGAC Coding sequence (CDS) from alignment at scaffold_226:192758..196220+ >TCONS_00053112 ID=TCONS_00053112|Name=TCONS_00053112|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at scaffold_226:192758..196220+ (Clytia hemisphaerica)
CAAAGCGAGTTGATCAATTTAAAATGGCGTCATGAGATAGCGCCAGGGCT
TCATCACAGGGCATCAAAGCTTACGAGGTTTTCAGacATAATTTTCATCA
CCTGTCTATCAATCATTCAATTGTCGATATCTTACCAAATAGTCAACCAA
ATTATAATGTTAGTCCAAAAGAAGTGGTGGGTTTTAACTTTGCATTATGG
AGTAGACGTGGTCGTGTACAATGATCTTAGACTGGGCAACCATAAAATGG
AGGCGCGGTTTATCATTAGATGTTTTCAACAAAATCCAGAACATTTCACA
TGACAAAGCGAGTTGATCAATTTAAAATGGCGTCATGAGATAGCGCCAGG
GCTTCATCACAGGGCATCAAAGCTTACGAGGTTTTCAGacATAATTTTCA
TCACCTGTCTATCAATCATTCAATTGTCGATATCTTACCAAATAGTCAAC
CAAATTATAATGTTAGTCCAAAAGAAGTGGTGGGTTTTAACTTTGCATTA
TGGAGTAGACGTGGTCGTGTACAATGATCTTAGACTGGGCAACCATAAAA
TGGAGGCGCGGTTTATCATTAGATGTTTTCAACAAAATCCAGAACATTTC
ACATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053112-exon-scaffold_226-1491911889:192758..192842 | TCONS_00053112-exon-scaffold_226-1491911889:192758..192842 | Clytia hemisphaerica | exon |
| TCONS_00053112-exon-scaffold_226-1510915933:192758..192842 | TCONS_00053112-exon-scaffold_226-1510915933:192758..192842 | Clytia hemisphaerica | exon |
| TCONS_00053112-exon-scaffold_226-1575043694:192758..192842 | TCONS_00053112-exon-scaffold_226-1575043694:192758..192842 | Clytia hemisphaerica | exon |
| TCONS_00053112-exon-scaffold_226-1491911889:195440..195657 | TCONS_00053112-exon-scaffold_226-1491911889:195440..195657 | Clytia hemisphaerica | exon |
| TCONS_00053112-exon-scaffold_226-1510915933:195440..195657 | TCONS_00053112-exon-scaffold_226-1510915933:195440..195657 | Clytia hemisphaerica | exon |
| TCONS_00053112-exon-scaffold_226-1575043694:195440..195657 | TCONS_00053112-exon-scaffold_226-1575043694:195440..195657 | Clytia hemisphaerica | exon |
| TCONS_00053112-exon-scaffold_226-1491911889:195971..196220 | TCONS_00053112-exon-scaffold_226-1491911889:195971..196220 | Clytia hemisphaerica | exon |
| TCONS_00053112-exon-scaffold_226-1510915933:195971..196220 | TCONS_00053112-exon-scaffold_226-1510915933:195971..196220 | Clytia hemisphaerica | exon |
| TCONS_00053112-exon-scaffold_226-1575043694:195971..196220 | TCONS_00053112-exon-scaffold_226-1575043694:195971..196220 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_226 | supercontig | scaffold_226:192758..196220 + |
Blast
The following BLAST results are available for this feature:
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