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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053102 ID=TCONS_00053102|Name=TCONS_00053102|organism=Clytia hemisphaerica|type=transcript|length=1598bp
GCTCAGGCCACTTTGGGTGCTTCCGTGTAAAACATTACgtcgtgaatatc
atgaatagaaaaacattttgaaaaagtagcTTAACGTCCTTGAAAACAAA
GACAacgaaaaaaaagcaaaacatttatGATGGTCAAACAGGTCACAAAA
AATTGTGCCATTGCTACATTGGTATTTGGTGTGCTTCATGTTGTCATTGG
TATCACACTTTTCGCATGTTGTTTTGTCTTCTCGGCCACCATAACAGGTG
GCAGTGTGGTGGCCCCTTATTGGACAGCACTACCAATAGTCATTCTGAGC
ATTATGGAGATCACACTTGGAATCACAAAGAACCACTGTTTGATGATAGC
GGTAATGGTATTAAACATTATATTTTGCCTTCTATCATGGATTGCAACAG
CCGTCATGGCAGTGGCAGCTGGAGTGTACAGCTTAGCGTTGGATAAATTG
GAACACTTTGGACATTGCATGGAATTCAATAATAAATGTTATTGCGATGG
ATCCACTTATAACACCCCTTGCAGGGACCTTAATACCATATCAACACTGT
TGGATTTATTTGCTGCTTTTAATGCTTTGGCAGCCATTGTTTGTTTGTGT
GTCTCAATCACGGGATGTGTGGCTGTTTGTTGTAAGCCTGAAGATGAGGC
ATCAGAGGGTCAAGTGGTACAAGCAGGTCAAGTAAGGTACAATGCTCGTG
GAGGACAGACCGTTATCATCAATACAGCTCCACCTTCTGCTCCACCGCAG
CCACCTCCGTATAGTTACCAAGGACCCAGCAGTCAAGACAACAAGAATCC
AACAATGCCCATGCAACCGATGCAATTCAATTCGaattttcaacaacaac
aacaaacatcCGCTTATCAACAGCCTCAAAATAACCAGCTTATTATGTAC
CAACAATAACAAGGACTTTAAACGCTAGACACAATTTATTGCTAGGAAAT
ATATTGGTGAATGCCGGTAGTATATTCTAAAGTACTCGCAATTATATTGA
AAAATGTTATTTGCAACAATAACAATATGTCTTCGTTACTCCAGTctaaa
tacagttgacgttcTCTAAGTCGATTTTCAACGGGGATTAGTAGTGGTAT
TCGACACCACGGGAACTTAAAAATGACTTCTCATTTTCCATACTAAGACC
ATGTTGTTCAGACGTTATGGTTTCGtatcgttccgaaacgaaacggttcc
gaaacaagcgTGAACGttaaaattcgaaacgtcaaaaaacaaGTCGTTAC
ATAGCAACTTTGCTCTACAAACTGATTTGCTCTACTATTTTcttcggaac
ggaactgctatCCGTTTTCTTACTCCGAAACGTTCGGAAACCAATATGAA
CGATCTCGATCCGTAAGGAAAGCCATACCCAgcgatacgaaaccgtaacg
tctgaacatgatcTAGGATACCTTTTCATTgcaaatcaaaatcaatcatT
GAGACAAATGATGACTATTGGTGAATAATTCATATAGAAATTCGATCTGA
CATGCAAAGAACttgtatttcaaaaaacttttcgtACTCATCTACAAACC
CAAAATATTGTATCTCTAAAAAAAGAATTGCAATCTCTACGAAAAAAG Run BLAST on NCBI protein sequence of TCONS_00053102-protein >TCONS_00053102-protein ID=TCONS_00053102-protein|Name=TCONS_00053102-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MMVKQVTKNCAIATLVFGVLHVVIGITLFACCFVFSATITGGSVVAPYWT
ALPIVILSIMEITLGITKNHCLMIAVMVLNIIFCLLSWIATAVMAVAAGV
YSLALDKLEHFGHCMEFNNKCYCDGSTYNTPCRDLNTISTLLDLFAAFNA
LAAIVCLCVSITGCVAVCCKPEDEASEGQVVQAGQVRYNARGGQTVIINT
APPSAPPQPPPYSYQGPSSQDNKNPTMPMQPMQFNSNFQQQQQTSAYQQP
QNNQLIMYQQ Run BLAST on NCBI transcript from alignment at scaffold_226:123040..126838+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053102 ID=TCONS_00053102|Name=TCONS_00053102|organism=Clytia hemisphaerica|type=transcript|length=3799bp|location=Sequence derived from alignment at scaffold_226:123040..126838+ (Clytia hemisphaerica)
GCTCAGGCCACTTTGGGTGCTTCCGTGTAAAACATTACgtcgtgaatatc
atgaatagaaaaacattttgaaaaagtagcTTAACGTCCTTGAAAACAAA
GACAacgaaaaaaaagcaaaacatttatGATGGTCAAACAGGTCACAAAA
AATTGTGCCATTGCTACATTGGTATTTGGTGTGCTTCATGTTGTCATTGG
TATCACACTTTTCGCATGTTGTTTTGTCTTCTCGGCCACCATAACAGGTG
GCAGTGTGGTGGCCCCTTATTGGACAGCACTACCAGTAAGTTTTAGTTGT
GAAATACAGCTGACACTCTCCACGTTCTATTTTCGATTTGCTCCATTTTT
CAGTTACCgccaacaagaaactctctcttagaccatgttcacacgctacg
ttccgtttcgctccgaaacgaaacggcTCCAAAATACcgtgaacgtcaaa
attataaacgtcaaaaaagaagacgttacaaagcaaaacagatcgaaacg
gtttcgctccactattttcatcggaacggaacagctccgttttcttgctc
cgaaacgttccgaaatgaGTATAAACACTTCCTATTCGTAACAAATAGCA
CACCAGAGCGATACGAAACCGTGACATATGAACATGgtcttattcgatga
aaatcttgaaaatcgaaCGAGAGAGCATTAACTGTAGTAAAAAAAGACAA
CAACTTCAAAGTCAAATTGGTTTCACATCCAAACTGATTTGATAAAATCG
CGAGCTGATTTGATACAAATAAAATAAAGCCTATACTTGCTGAAAGGAAA
ATCACCAAATCTAATTCTTAAAGACAATCTAAACGTGTAAAAGTAGTTTA
ACCATTCCGTCTATCATTTTTATAGATAGTCATTCTGAGCATTATGGAGA
TCACACTTGGAATCACAAAGAACCACTGTTTGGTAAGCGTCTGAAGCAAT
GCACTGACATAAGGGAGGTACCTAGGAAGGTGAAGAATACAGTTATGTGC
TGctcttaagggtgcctttttggaaCCTGGCAGTCCCACTAAGAgctaaa
aaattaataaaatttcaatcttttgtcCCTTAAAAGACAAAATTCGGTTA
AATTGGTCCCAATAAGAGTCGCAAAATTCAcaaagttttcttatttttag
tcccgctaagagTCAGAGTGGCGAAACTCGGATGAAAAATACTCGCCAGC
TCTTCGATTTCCAACTGGTAGAATCTAGTCCCCTCCACCTCTCCTAACGA
TAAGTCATTACACCCTAATCTTATTGTCGTCTCAAATTCAACAACAAAAG
ATTCACACAATTCAATCCCTTACTATCTCCGAGTTACAGTTTCGACTTCT
TTTTTTCCAGATGATAGCGGTAATGGTATTAAACATTATATTTTGCCTTC
TATCATGGATTGCAACAGCCGTCATGGCAGTGGCAGCTGGAGTGTACAGC
TTAGCGTTGGATAAATTGGAACACTTTGGACATTGCATGGAATTCAATAA
TAAATGTTATTGCGATGGATCCACTTATAGTAAGTTCCTTTTTACCCGAG
CCTTACATCATATAGTTTTTGATAAGAACGTCAACGAAGTCTTTAGCTTT
AGACCTTTAGACCATGTTCGtacgtgacggttccgtttcgccattctatt
ggttagaagtgacgtaacacttgaatgtaaccaatagaatggtttCATTT
CGttccggagcgaaacggaaccgtcacgtgtgaacatggtcttagatgct
cttaacttttgtcttttttgcctCGAAGCATtatcttcttttaaaaaatt
gtgtCTTTGAATAACCATTGGATCTATGGGatggggacaagctggagttt
ttacaaactcttatttgatttggttggtcgttaagatgtaataaaagaat
cttattactttttctaaagaacgcgtcatctctatcactttaaatgacca
attagtgaagtatcttctaaaaactccaaggcatctcatgAAAAGGAGGT
TCGAACTTTTCAGATTAATTAAGGGAACACTCTGTTCCATACATTAAAAC
TGCCTAATTTTGCTCACATGTCACTACTTTATTGCAGACACCCCTTGCAG
GGACCTTAATACCATATCAACACTGTTGGATTTATTTGCTGCTTTTAATG
CTTTGGCAGCCATTGTTTGTTTGTGTGTCTCAATCACGGGATGTGTGGCT
GTTTGTTGTAAGCCTGAAGATGAGGCATCAGAGGTGAGAAGTCTTTAATA
ATGTGTATCTGTATGAATGCGGGTAGGGTTCTTTTGCCTGCGTGAATGcg
taaattgaaaaaacttatgcgtgaacgtgaaaatccactttttgattgcg
cgAATGTGGAAATATGCTCTGTTTTGCATAAAATACgtgaattttctctt
ttttccatcgattttgtgaaaatttccccgattttcaaaagtttgaacga
tttttcccgaaaaaaattacCGGTAAAAAGAATGCATGAATGTGTGAAAT
TTGAGTCATCGATGGGGAGGGGAGGGGGAGCTCAATAATATGGTGgtaat
atttgttttgattgtttggTTAAGACAGACAGTGCTGAGTGAGATTCTCG
CTTTGCCGTTTTGTAAGATTCGGTtcaatttgggggggggggacacGGGA
TgtaaaaactataaaaatacagtgaagtctccataactcaaacccGAAGG
GGGGGAGGGACACAAATTTGTTGATTTCGAGTGATGGAGTTTGGttcata
aggcattgttaactgaggGGAAgaaaaaacttgttcgagttaaggagaca
ttcgagttattgAGGTTCGAGTTAATGAGACTTAACTGTATACTAATTTT
CTTCATAGGGTCAAGTGGTACAAGCAGGTCAAGTAAGGTACAATGCTCGT
GGAGGACAGACCGTTATCATCAATACAGCTCCACCTTCTGCTCCACCGCA
GCCACCTCCGTATAGTTACCAAGGACCCAGCAGTCAAGACAACAAGAATC
CAACAATGCCCATGCAACCGATGCAATTCAATTCGaattttcaacaacaa
caacaaacatcCGCTTATCAACAGCCTCAAAATAACCAGCTTATTATGTA
CCAACAATAACAAGGACTTTAAACGCTAGACACAATTTATTGCTAGGAAA
TATATTGGTGAATGCCGGTAGTATATTCTAAAGTACTCGCAATTATATTG
AAAAATGTTATTTGCAACAATAACAATATGTCTTCGTTACTCCAGTctaa
atacagttgacgttcTCTAAGTCGATTTTCAACGGGGATTAGTAGTGGTA
TTCGACACCACGGGAACTTAAAAATGACTTCTCATTTTCCATACTAAGAC
CATGTTGTTCAGACGTTATGGTTTCGtatcgttccgaaacgaaacggttc
cgaaacaagcgTGAACGttaaaattcgaaacgtcaaaaaacaaGTCGTTA
CATAGCAACTTTGCTCTACAAACTGATTTGCTCTACTATTTTcttcggaa
cggaactgctatCCGTTTTCTTACTCCGAAACGTTCGGAAACCAATATGA
ACGATCTCGATCCGTAAGGAAAGCCATACCCAgcgatacgaaaccgtaac
gtctgaacatgatcTAGGATACCTTTTCATTgcaaatcaaaatcaatcat
TGAGACAAATGATGACTATTGGTGAATAATTCATATAGAAATTCGATCTG
ACATGCAAAGAACttgtatttcaaaaaacttttcgtACTCATCTACAAAC
CCAAAATATTGTATCTCTAAAAAAAGAATTGCAATCTCTACGAAAAAAG Coding sequence (CDS) from alignment at scaffold_226:123040..126838+ >TCONS_00053102 ID=TCONS_00053102|Name=TCONS_00053102|organism=Clytia hemisphaerica|type=CDS|length=3915bp|location=Sequence derived from alignment at scaffold_226:123040..126838+ (Clytia hemisphaerica)
atGATGGTCAAACAGGTCACAAAAAATTGTGCCATTGCTACATTGGTATT
TGGTGTGCTTCATGTTGTCATTGGTATCACACTTTTCGCATGTTGTTTTG
TCTTCTCGGCCACCATAACAGGTGGCAGTGTGGTGGCCCCTTATTGGACA
GCACTACCAATAGTCATTCTGAGCATTATGGAGATCACACTTGGAATCAC
AAAGAACCACTGTTTGATGATAGCGGTAATGGTATTAAACATTATATTTT
GCCTTCTATCATGGATTGCAACAGCCGTCATGGCAGTGGCAGCTGGAGTG
TACAGCTTAGCGTTGGATAAATTGGAACACTTTGGACATTGCATGGAATT
CAATAATAAATGTTATTGCGATGGATCCACTTATAACACCCCTTGCAGGG
ACCTTAATACCATATCAACACTGTTGGATTTATTTGCTGCTTTTAATGCT
TTGGCAGCCATTGTTTGTTTGTGTGTCTCAATCACGGGATGTGTGGCTGT
TTGTTGTAAGCCTGAAGATGAGGCATCAGAGGGTCAAGTGGTACAAGCAG
GTCAAGTAAGGTACAATGCTCGTGGAGGACAGACCGTTATCATCAATACA
GCTCCACCTTCTGCTCCACCGCAGCCACCTCCGTATAGTTACCAAGGACC
CAGCAGTCAAGACAACAAGAATCCAACAATGCCCATGCAACCGATGCAAT
TCAATTCGaattttcaacaacaacaacaaacatcCGCTTATCAACAGCCT
CAAAATAACCAGCTTATTATGTACCAACAATAAatGATGGTCAAACAGGT
CACAAAAAATTGTGCCATTGCTACATTGGTATTTGGTGTGCTTCATGTTG
TCATTGGTATCACACTTTTCGCATGTTGTTTTGTCTTCTCGGCCACCATA
ACAGGTGGCAGTGTGGTGGCCCCTTATTGGACAGCACTACCAATAGTCAT
TCTGAGCATTATGGAGATCACACTTGGAATCACAAAGAACCACTGTTTGA
TGATAGCGGTAATGGTATTAAACATTATATTTTGCCTTCTATCATGGATT
GCAACAGCCGTCATGGCAGTGGCAGCTGGAGTGTACAGCTTAGCGTTGGA
TAAATTGGAACACTTTGGACATTGCATGGAATTCAATAATAAATGTTATT
GCGATGGATCCACTTATAACACCCCTTGCAGGGACCTTAATACCATATCA
ACACTGTTGGATTTATTTGCTGCTTTTAATGCTTTGGCAGCCATTGTTTG
TTTGTGTGTCTCAATCACGGGATGTGTGGCTGTTTGTTGTAAGCCTGAAG
ATGAGGCATCAGAGGGTCAAGTGGTACAAGCAGGTCAAGTAAGGTACAAT
GCTCGTGGAGGACAGACCGTTATCATCAATACAGCTCCACCTTCTGCTCC
ACCGCAGCCACCTCCGTATAGTTACCAAGGACCCAGCAGTCAAGACAACA
AGAATCCAACAATGCCCATGCAACCGATGCAATTCAATTCGaattttcaa
caacaacaacaaacatcCGCTTATCAACAGCCTCAAAATAACCAGCTTAT
TATGTACCAACAATAAatGATGGTCAAACAGGTCACAAAAAATTGTGCCA
TTGCTACATTGGTATTTGGTGTGCTTCATGTTGTCATTGGTATCACACTT
TTCGCATGTTGTTTTGTCTTCTCGGCCACCATAACAGGTGGCAGTGTGGT
GGCCCCTTATTGGACAGCACTACCAATAGTCATTCTGAGCATTATGGAGA
TCACACTTGGAATCACAAAGAACCACTGTTTGATGATAGCGGTAATGGTA
TTAAACATTATATTTTGCCTTCTATCATGGATTGCAACAGCCGTCATGGC
AGTGGCAGCTGGAGTGTACAGCTTAGCGTTGGATAAATTGGAACACTTTG
GACATTGCATGGAATTCAATAATAAATGTTATTGCGATGGATCCACTTAT
AACACCCCTTGCAGGGACCTTAATACCATATCAACACTGTTGGATTTATT
TGCTGCTTTTAATGCTTTGGCAGCCATTGTTTGTTTGTGTGTCTCAATCA
CGGGATGTGTGGCTGTTTGTTGTAAGCCTGAAGATGAGGCATCAGAGGGT
CAAGTGGTACAAGCAGGTCAAGTAAGGTACAATGCTCGTGGAGGACAGAC
CGTTATCATCAATACAGCTCCACCTTCTGCTCCACCGCAGCCACCTCCGT
ATAGTTACCAAGGACCCAGCAGTCAAGACAACAAGAATCCAACAATGCCC
ATGCAACCGATGCAATTCAATTCGaattttcaacaacaacaacaaacatc
CGCTTATCAACAGCCTCAAAATAACCAGCTTATTATGTACCAACAATAAa
tGATGGTCAAACAGGTCACAAAAAATTGTGCCATTGCTACATTGGTATTT
GGTGTGCTTCATGTTGTCATTGGTATCACACTTTTCGCATGTTGTTTTGT
CTTCTCGGCCACCATAACAGGTGGCAGTGTGGTGGCCCCTTATTGGACAG
CACTACCAATAGTCATTCTGAGCATTATGGAGATCACACTTGGAATCACA
AAGAACCACTGTTTGATGATAGCGGTAATGGTATTAAACATTATATTTTG
CCTTCTATCATGGATTGCAACAGCCGTCATGGCAGTGGCAGCTGGAGTGT
ACAGCTTAGCGTTGGATAAATTGGAACACTTTGGACATTGCATGGAATTC
AATAATAAATGTTATTGCGATGGATCCACTTATAACACCCCTTGCAGGGA
CCTTAATACCATATCAACACTGTTGGATTTATTTGCTGCTTTTAATGCTT
TGGCAGCCATTGTTTGTTTGTGTGTCTCAATCACGGGATGTGTGGCTGTT
TGTTGTAAGCCTGAAGATGAGGCATCAGAGGGTCAAGTGGTACAAGCAGG
TCAAGTAAGGTACAATGCTCGTGGAGGACAGACCGTTATCATCAATACAG
CTCCACCTTCTGCTCCACCGCAGCCACCTCCGTATAGTTACCAAGGACCC
AGCAGTCAAGACAACAAGAATCCAACAATGCCCATGCAACCGATGCAATT
CAATTCGaattttcaacaacaacaacaaacatcCGCTTATCAACAGCCTC
AAAATAACCAGCTTATTATGTACCAACAATAAatGATGGTCAAACAGGTC
ACAAAAAATTGTGCCATTGCTACATTGGTATTTGGTGTGCTTCATGTTGT
CATTGGTATCACACTTTTCGCATGTTGTTTTGTCTTCTCGGCCACCATAA
CAGGTGGCAGTGTGGTGGCCCCTTATTGGACAGCACTACCAATAGTCATT
CTGAGCATTATGGAGATCACACTTGGAATCACAAAGAACCACTGTTTGAT
GATAGCGGTAATGGTATTAAACATTATATTTTGCCTTCTATCATGGATTG
CAACAGCCGTCATGGCAGTGGCAGCTGGAGTGTACAGCTTAGCGTTGGAT
AAATTGGAACACTTTGGACATTGCATGGAATTCAATAATAAATGTTATTG
CGATGGATCCACTTATAACACCCCTTGCAGGGACCTTAATACCATATCAA
CACTGTTGGATTTATTTGCTGCTTTTAATGCTTTGGCAGCCATTGTTTGT
TTGTGTGTCTCAATCACGGGATGTGTGGCTGTTTGTTGTAAGCCTGAAGA
TGAGGCATCAGAGGGTCAAGTGGTACAAGCAGGTCAAGTAAGGTACAATG
CTCGTGGAGGACAGACCGTTATCATCAATACAGCTCCACCTTCTGCTCCA
CCGCAGCCACCTCCGTATAGTTACCAAGGACCCAGCAGTCAAGACAACAA
GAATCCAACAATGCCCATGCAACCGATGCAATTCAATTCGaattttcaac
aacaacaacaaacatcCGCTTATCAACAGCCTCAAAATAACCAGCTTATT
ATGTACCAACAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053102-exon-scaffold_226-1491911889:123040..123324 | TCONS_00053102-exon-scaffold_226-1491911889:123040..123324 | Clytia hemisphaerica | exon |
| TCONS_00053102-exon-scaffold_226-1510915933:123040..123324 | TCONS_00053102-exon-scaffold_226-1510915933:123040..123324 | Clytia hemisphaerica | exon |
| TCONS_00053102-exon-scaffold_226-1575043694:123040..123324 | TCONS_00053102-exon-scaffold_226-1575043694:123040..123324 | Clytia hemisphaerica | exon |
| TCONS_00053102-exon-scaffold_226-1491911889:123915..123971 | TCONS_00053102-exon-scaffold_226-1491911889:123915..123971 | Clytia hemisphaerica | exon |
| TCONS_00053102-exon-scaffold_226-1510915933:123915..123971 | TCONS_00053102-exon-scaffold_226-1510915933:123915..123971 | Clytia hemisphaerica | exon |
| TCONS_00053102-exon-scaffold_226-1575043694:123915..123971 | TCONS_00053102-exon-scaffold_226-1575043694:123915..123971 | Clytia hemisphaerica | exon |
| TCONS_00053102-exon-scaffold_226-1491911889:124400..124568 | TCONS_00053102-exon-scaffold_226-1491911889:124400..124568 | Clytia hemisphaerica | exon |
| TCONS_00053102-exon-scaffold_226-1510915933:124400..124568 | TCONS_00053102-exon-scaffold_226-1510915933:124400..124568 | Clytia hemisphaerica | exon |
| TCONS_00053102-exon-scaffold_226-1575043694:124400..124568 | TCONS_00053102-exon-scaffold_226-1575043694:124400..124568 | Clytia hemisphaerica | exon |
| TCONS_00053102-exon-scaffold_226-1491911889:125127..125272 | TCONS_00053102-exon-scaffold_226-1491911889:125127..125272 | Clytia hemisphaerica | exon |
| TCONS_00053102-exon-scaffold_226-1510915933:125127..125272 | TCONS_00053102-exon-scaffold_226-1510915933:125127..125272 | Clytia hemisphaerica | exon |
| TCONS_00053102-exon-scaffold_226-1575043694:125127..125272 | TCONS_00053102-exon-scaffold_226-1575043694:125127..125272 | Clytia hemisphaerica | exon |
| TCONS_00053102-exon-scaffold_226-1491911889:125898..126838 | TCONS_00053102-exon-scaffold_226-1491911889:125898..126838 | Clytia hemisphaerica | exon |
| TCONS_00053102-exon-scaffold_226-1510915933:125898..126838 | TCONS_00053102-exon-scaffold_226-1510915933:125898..126838 | Clytia hemisphaerica | exon |
| TCONS_00053102-exon-scaffold_226-1575043694:125898..126838 | TCONS_00053102-exon-scaffold_226-1575043694:125898..126838 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_226 | supercontig | scaffold_226:123040..126838 + |
Blast
The following BLAST results are available for this feature:
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