TCONS_00053086 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053086
Unique NameTCONS_00053086
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length632

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053086 ID=TCONS_00053086|Name=TCONS_00053086|organism=Clytia hemisphaerica|type=transcript|length=632bp
TTCATACGGATGCCTCGAGCACGGTAGGCTATGGCGGGTGTTTTAAAAGT
CAATGGTTTTGTGGGCGTTGGGAAGAAAGTGATGTTATGCCATCTATGGC
AGCTAGGGAACTTTACCCGATTGTGTTAGCAGCGGTCTTTTGGGGATCGG
AATGGAGTGGCAAGCGTATCCAGGTTTTTTGTGATAATGAGGCAACAGTA
ACTTTGATAAATAAAGGCTACTCTAGTGACAAAGTCATTGCTAAGTTATT
GAGATGTTTGACACTAGAATGTATGTCCAAAAATTTTAGTATAAAGGCAG
CGCACATACCAggtaagaaaaatattaaagcGGATTTACTCTCTCGTTTG
CAGCTGGAGCGGTTCAAACGAATATTTCCAGACATGGAGACCTATCCCGT
CGTGGTAACACCCGCCGTGAAGAAATTCGTGCTGCAATGAAAGACCTCTC
GTCACAGTCATTGGCTATGGGTACAAAGAAGACCTACAGTGAAGGTGTTA
AAGCCTTTAAGCGTTACCAGCAATACGTCAATGGGGATACCGAAAAAGTC
TCTCGCCCTGACCATAATAGCCTAATGATGTTTGTTGCTTACCTTGCTTA
TTATTGCAAGCTTTCTTATAGGTGTATCCGTA
Run BLAST on NCBI

protein sequence of TCONS_00053086-protein

>TCONS_00053086-protein ID=TCONS_00053086-protein|Name=TCONS_00053086-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
HTDASSTVGYGGCFKSQWFCGRWEESDVMPSMAARELYPIVLAAVFWGSE
WSGKRIQVFCDNEATVTLINKGYSSDKVIAKLLRCLTLECMSKNFSIKAA
HIPGKKNIKADLLSRLQLERFKRIFPDMETYPVVVTPAVKKFVLQ
Run BLAST on NCBI

transcript from alignment at scaffold_225:191333..191964

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053086 ID=TCONS_00053086|Name=TCONS_00053086|organism=Clytia hemisphaerica|type=transcript|length=632bp|location=Sequence derived from alignment at scaffold_225:191333..191964 (Clytia hemisphaerica)
TACGGATACACCTATAAGAAAGCTTGCAATAATAAGCAAGGTAAGCAACA AACATCATTAGGCTATTATGGTCAGGGCGAGAGACTTTTTCGGTATCCCC ATTGACGTATTGCTGGTAACGCTTAAAGGCTTTAACACCTTCACTGTAGG TCTTCTTTGTACCCATAGCCAATGACTGTGACGAGAGGTCTTTCATTGCA GCACGAATTTCTTCACGGCGGGTGTTACCACGACGGGATAGGTCTCCATG TCTGGAAATATTCGTTTGAACCGCTCCAGCTGCAAACGAGAGAGTAAATC CgctttaatatttttcttaccTGGTATGTGCGCTGCCTTTATACTAAAAT TTTTGGACATACATTCTAGTGTCAAACATCTCAATAACTTAGCAATGACT TTGTCACTAGAGTAGCCTTTATTTATCAAAGTTACTGTTGCCTCATTATC ACAAAAAACCTGGATACGCTTGCCACTCCATTCCGATCCCCAAAAGACCG CTGCTAACACAATCGGGTAAAGTTCCCTAGCTGCCATAGATGGCATAACA TCACTTTCTTCCCAACGCCCACAAAACCATTGACTTTTAAAACACCCGCC ATAGCCTACCGTGCTCGAGGCATCCGTATGAA

Coding sequence (CDS) from alignment at scaffold_225:191333..191964

>TCONS_00053086 ID=TCONS_00053086|Name=TCONS_00053086|organism=Clytia hemisphaerica|type=CDS|length=438bp|location=Sequence derived from alignment at scaffold_225:191333..191964 (Clytia hemisphaerica)
TCATTGCAGCACGAATTTCTTCACGGCGGGTGTTACCACGACGGGATAGG
TCTCCATGTCTGGAAATATTCGTTTGAACCGCTCCAGCTGCAAACGAGAG
AGTAAATCCgctttaatatttttcttaccTGGTATGTGCGCTGCCTTTAT
ACTAAAATTTTTGGACATACATTCTAGTGTCAAACATCTCAATAACTTAG
CAATGACTTTGTCACTAGAGTAGCCTTTATTTATCAAAGTTACTGTTGCC
TCATTATCACAAAAAACCTGGATACGCTTGCCACTCCATTCCGATCCCCA
AAAGACCGCTGCTAACACAATCGGGTAAAGTTCCCTAGCTGCCATAGATG
GCATAACATCACTTTCTTCCCAACGCCCACAAAACCATTGACTTTTAAAA
CACCCGCCATAGCCTACCGTGCTCGAGGCATCCGTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033528XLOC_033528Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053086-proteinTCONS_00053086-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053086-exon-scaffold_225-1491911889:191333..191964TCONS_00053086-exon-scaffold_225-1491911889:191333..191964Clytia hemisphaericaexon
TCONS_00053086-exon-scaffold_225-1510915933:191333..191964TCONS_00053086-exon-scaffold_225-1510915933:191333..191964Clytia hemisphaericaexon
TCONS_00053086-exon-scaffold_225-1575043694:191333..191964TCONS_00053086-exon-scaffold_225-1575043694:191333..191964Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_225supercontigscaffold_225:191333..191964 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0838717 0.0817882 0.189928 0.185815 0.226211 0.357511 0.10783 0 0.0706771 0.087545 0.50984 0.0558581 0.111561 0.695143 0.381001 0.408873 0 0.0645342 0 0 0 0 0 0 0 0 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053086 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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