TCONS_00053081 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053081
Unique NameTCONS_00053081
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length331

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053081 ID=TCONS_00053081|Name=TCONS_00053081|organism=Clytia hemisphaerica|type=transcript|length=331bp
AAAATTTCACGGTGTTGATCTAACAAGGGACGATTTTTCAGTCAATTATT
CTAATCAGTTGGAGGCTCTGCAGCCGGGGTTAGGTTTGCTTTTATAGCTC
TCTATCCTGAAGATGCATTTACCTTCGTTTACCCAGAGAAATGtatggaa
aagaaaaacagcTTCTCTGATTACCCAAAGTGTTCTGATCGTTTCTATTG
AAAACGCTTTTGTTTTAGCTTTGATTAGGGCGTTAGGAAAAgttcaagaa
aataaaaatggaTCGTACTAAAATTTGGCCGGTTCCTATATGTTATGATC
ATAAAAGTGGATTTACGTTTTTCGTTCTTAA
Run BLAST on NCBI

transcript from alignment at scaffold_225:71271..71601

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053081 ID=TCONS_00053081|Name=TCONS_00053081|organism=Clytia hemisphaerica|type=transcript|length=331bp|location=Sequence derived from alignment at scaffold_225:71271..71601 (Clytia hemisphaerica)
TTAAGAACGAAAAACGTAAATCCACTTTTATGATCATAACATATAGGAAC
CGGCCAAATTTTAGTACGAtccatttttattttcttgaacTTTTCCTAAC
GCCCTAATCAAAGCTAAAACAAAAGCGTTTTCAATAGAAACGATCAGAAC
ACTTTGGGTAATCAGAGAAgctgtttttcttttccataCATTTCTCTGGG
TAAACGAAGGTAAATGCATCTTCAGGATAGAGAGCTATAAAAGCAAACCT
AACCCCGGCTGCAGAGCCTCCAACTGATTAGAATAATTGACTGAAAAATC
GTCCCTTGTTAGATCAACACCGTGAAATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033523XLOC_033523Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053081-exon-scaffold_225-1491911889:71271..71601TCONS_00053081-exon-scaffold_225-1491911889:71271..71601Clytia hemisphaericaexon
TCONS_00053081-exon-scaffold_225-1510915933:71271..71601TCONS_00053081-exon-scaffold_225-1510915933:71271..71601Clytia hemisphaericaexon
TCONS_00053081-exon-scaffold_225-1575043694:71271..71601TCONS_00053081-exon-scaffold_225-1575043694:71271..71601Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_225supercontigscaffold_225:71271..71601 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.290793	0	0	0	0.392151	0.309883	0.747722	1.75002	0.490092	3.33882	0.294613	1.162	0.580193	1.20507	0.330244	0	0	0.223748	0	0.323472	0.281156	0.411413	0	0.909376	0.312212	1.67185	0	0	0	0.328839
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053081 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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