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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053076 ID=TCONS_00053076|Name=TCONS_00053076|organism=Clytia hemisphaerica|type=transcript|length=321bp
CCTGCTGAATACAAATGCTTGATTTGTCATTTGTTAATAAGAAACGCAAC
AGAGCTTCCATGTTCACACGTTTTTTGTGACCAATGTTTGTTAAAATGGG
AAGAGAGACAACATGATATGAACAAGGATGCCCCTTTAAGATGCTCACTA
TGCAACCAAGCTTACAACAATCAAACCGATAAACATCCCTCAAAAGCATT
GGATCGTGTTATCAAAACCACATTAAATGTTCTATGCCACCAAAAAGAAA
ATGGTTGTGAATGGATTGGAAAGATTGTTGAATATAAGGATCATGCGCCT
ATATGTCAATTCGTCAAAATA Run BLAST on NCBI transcript from alignment at scaffold_225:200609..209642- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053076 ID=TCONS_00053076|Name=TCONS_00053076|organism=Clytia hemisphaerica|type=transcript|length=9034bp|location=Sequence derived from alignment at scaffold_225:200609..209642- (Clytia hemisphaerica)
CCTGCTGAATACAAATGCTTGATTTGTCATTTGTTAATAAGAAACGCAAC
AGAGCTTCCATGTTCACACGTTTTTTGTGACCAATGTTTGTTAAAATGGG
AAGAGAGACAACATGATATGAACAAGTAAGTTTGTCAGGACTTTTCAAGG
TTCTAAAATGTCTTTCGGTGTATTCTTTATTCGAGTTTATATTGAATGTC
TTTATTCGAGTTTATATTGAATGCCAAAACAGAATACAAAAATATTTCCC
CGCAGAAGTACTTGATGGATTTCCTTTTAAAAATGCAAAGAAGTTTACTT
TCTGAAATACAAAATGAAGAAAATTTTTGTTGGAAATACAAAGTGAATTA
TTTTCTTCAAAAATTATTAGAAATGGAATGTGAATTTTCTTTTAGAAATG
AAAGAAATTTTTCTTAAGAAACTCTTAAGAACTTACCTCACGAAATACTA
AGTTATTGTTCGATAAAAATCAAGAAAACAAAAATTTGTTCAATTTATTG
TAAAAGCTTTTCGACTATCGTCATCGTCAGTACAGTAAAAAATACATAAG
CATATGAAAAAGTATCTACAATTTATAAAGAAAATGTTAAAAAGTTGAGA
AATCACATCAATTGTCACGGGAGCAACGATGCCATGACGATTAATGTGTA
TTCTTTTGTTCCAGAGTAAAATAATTTACGTTATGCCGTTTCTAAATAAG
TTTAATTGCTTAGTCTCTAGTTGATTGTTTAGTGAATGCTTTTTCGATGC
GATTTGGAAAGCCTCTAAGTTTTTCCTTTCTTTGCTCTTAAGTGGTGCCG
AAATTAGAACCTTCCAGTTAAATACATGACTATTATCATGACTCTCTAAA
TGTTTTGCGGGCTCCGAATTACCTTTTAGCGAGTTGTGTTCACTCCAGCG
AACTTCAACATTTCTAGCCGTTTCACCGATACTAAGTTATTCTTCCATCA
AAAATACAAAGTTATATTCAATTAAGAATAAAGTGAATTTCCTTCAGAAA
TACAAGGTGAATTTTTCATCCGAATGCAAGTTGAAATTTCCTTTAGAAGA
ATACGTAAATTTTCCTTTAGAAATGCAAAGTACAAAGTTAATTCTCCTTC
ATAAATATTAAAATCAATTTTCATATATATGAAGAAAAAGTCAATTTTTC
TTGAGAAATACATGGTAAATTTTCCTTCAGAAATACAAAAACTCTTCCGA
TCCTGTTTCAATTTTTTAGGGATGCCCCTTTAAGATGCTCACTATGCAAC
CAAGCTTACAACAATCAAACCGATGTCAGGATAAGAAAGTTTATTTATTT
TTTTCTAAACTAATTTTTTTATGTAGAACAAACGATATAATGGTTGTCTT
TTTAATTTCTTTCTTGCAAATCCTTTAGCCTGGAGATCCAAGCTGTTTAA
GTTTCTGCTGTTTACAGCTACCAATCAGTGCCGTAATATTTGCCCCAAAG
GGGGATTTCCCTCACTATCTTAAAATCCTCGCCAGAGCACCAAAACTTTT
TTAAATTCAGGAAAAAAACGTGAAAATACCCAAAATTGTCAATGTATTTC
GGCACCCATTGTAGGTCTGGCTAGATGGTTGGAAGCCAAGTAAACTTTTC
ATCTTGGAGCAATCAAAAAATTGCAGAGCTAATAGACTAACAAATTCTAT
GAAGCCACTCCGTCACCGAGACCTGTCGAGAGAGGATATGTCTGTCAAAC
GGTATTACTTTGCACTTGAGGTTGTATTTCTACTATCAAGCATTTTCCTA
TTGCTTTTCTTCTCAAGAAACATCCCTCTAAAGCATTGGATCGTATTATC
AAAACCACATTAAATGTTCTATGCCACCAAAAAGAAAATGGTTGTGAATG
GATTGGAAAGATTGTTGAATATAAGGTCAGTAGAATGCCGGGACAAAGCC
TCCCAAGGATTTATTTCAGTAATTCACGTCCGAGTCTAAAGACTTTTGTG
TCAAAAGTTGATATAACAGGGGATTGACAAATTTAGGGGAGTTGGATTTT
AATAAGACAAATAAGAAGTGATATATAATTTTTAGGGCTCCAGGGTTATA
AACAGAAAACGATTACTGTACGACGCAGAGATAAGATTCTGAACCATCAA
TAGTGCATACTTTAAAAATTCATAAATCATCAACACTTTTATACACAGGA
TCATGCGCCTATATGTCAATTCGTCAAAATAAATTGCAGTCTAGCGGGAT
GCAAGGAGAAAATAGAGAGAAGACATTTGCAAGAACATGAACAAAAATGT
TGCCACCGTATTGTAAAATGTCCTCATTGTCAAATTGAACAAAAGTTCAA
ACATCTCGAGGTATTGAAGATTTTACACACATCCAAAAGTGCCACAAGCG
ATTAGCGTGAATAGTATACTATTCTTACGTCTTTGTTGTTGATTGTAAAT
TATATTTGGTGTCATGAAGACTTTGTCGCTATTTTTGCGTAATGGGTTTT
TCCAAAAGTAGTCCGTGCCCCCTGTTGAGGATATCGGATATCCAGGGGTT
GAATATCTACATAGGAGCGGATATCCATAGGGATTCAAGTAAAAAATACG
ATATCGATCCAGGGGTAAGCATCTTTATAAGAGAGGATATCCAGGGGGTT
CGATACTTCGAAAAATCAATATCCTCAACAGTGGGGGTAAAATCTTTTTC
TGGAAAAGCCCAATGGACCAATTTTGGCAGTTTTCGTAATCGTAATGAAA
GCATTCCCCATTGGTGTTCTATTTTGGAATAGAAAGAATACTATATGAGG
TGATGATGCAGGAATGTAATAGATTTTAACCCATATCTGATGTGACCTGT
ATTTGCAACTCCTCTCAAATTACTTCTCCAATTTAAAGTTTTTTGGATGT
TGTTTTTAAGATGTTGTGTCTTTATCTTTTATATCACAGAGTCACCTAAA
CGTGTGTCCAGAAATGATGGTCGATTGTAAAAATCCTGAATGCCAAGTGC
GCATGTTCAGAAAAGAGGTAAACACGATTCATTATAATCATTGGCATCCG
GGGGGGGGGGCACTCGATCTGAAAACGACCATACGTTTGGCCCAAAATTT
GGCTTCTAAAATCTGACCCTTACAGTGCAGTGAATTTCCATTAAAAATCA
TACCCTTACAGTGTACTTTTTCAAAATTTCTCGCCCGTAAGGGCGAAAAT
GTTTGCAATTTTCCAAGAAAATGTGGAATTTTTCCTCAAAAATTTACCAA
TTTTGTGTCAATTTTACCAAAAAATTGGCCTTTTATCACAATTTCCTACC
CTTACAGTGCAGTTCAGTGCAGTTTTGTAATTTCCTACCCTTACAGTGCA
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAGCCACAA
CCTCATTTTCTGGCAGGCTCGTTGTGGCTCGTTGTGCCATTTTCTGGCTC
GTTGTGTGTTTTAGTATTACCCTTTTGGAATCATTTTACTCTAGGATTCT
AGTAAGTACTCTATAAAATTATCATGTATATAGTTTGTTAAAATTGAAGC
ATTCGTTGAAAAATAACAAACAAAATAACAATTGGGCACAATTAAAGCTA
ATCGTGGACTTTATATATAAAAATAACTCTCGATTTTTCTTAAAAATTAG
TACTGAAAATGACTGGGATATTGCAATCTTCTGGACACTGATTAAAAGAG
AGTTTCATGTTGTATATTTCAGGTACCACTTCATTTGAAAAATGAATGCC
TATATGAACCAGTTAAATGCAAATTCGCTTCACTTGGCTACACTGGGATG
GTAAGACGTCAACAGCCTAACTTTGAGTAAAACAGGATGTGCTAAAATGT
TTAAGGTTAAAACGACTTCAATTTTGCTGTAGTCTACACGATAGATAGTC
ACAGGCTTTAGGCCTTCCTATCCTGAAGAGGAGTAGTTTTACGCTTGGAG
CGAAGGCAGATATGACGTAGCTTAATTTTGCTAGAGCAAGAAAATGCAAA
AACTGATTTGAGGAAATCTTCGTCATCTTTCCCCTCCTTGAAGTTGATCA
AAAATATTTTTAGGGGGGGGACTTTTTCAGTTTTAAGGTATATTGAATGC
TTTTTTCTTCACAGATTCAATGGATGGACAAAAAAACACACGATCAAGAA
TTCGCAGCGATTCATAACAAAATGCTTCTCGAAAAGCATATAGAGACTTC
AAGGGAACTACAACAAACTCGAGATGAGATGAGAGACATGAAGTCAAAGA
TAAATTCCTTAAGTGGTTTCAAAGGAAACCAAGCAGAAATAAGTGATGCT
TACTCCCTGATTAAGGAAACTAAAGCCGAGTTAATAGCCGTGAAAGCCGA
GTTACAAAAAACGAAGACCGAGTTAACCTCGACAAAGATAGAACACTTGA
AAACAAAGAATGAGCTTCAAGAAGTTCGAATAGAGGTAGCAGATCTCAAC
AATCATTGCAATCAGCTTTACCAGCTAGTCGAACATTCGTCTGAAATCGT
GTGTAGCCATCTACTCAACGAAAAAGAATCCGAAATTGTATTTGAAAACA
AAAGTTTTGAAAATCTGGTACCCTTACTAGTTAAGAAGAATTACACGTTT
TTTTTTTTTTAAGAAACACACTTTTAAGAAACATGAGGCTCAGAATGTCT
AAAAACTAAGAAACATCGAAGAAACATGCTGAGCATGAGAATGAGAAAAA
ACATTCTTTAATTCGTTTTTTTTAAGAACCTTCCAATCCAGCCTTTCATA
AGGCTGATTATGTCAAAAAGTTTAGAAACATGTAAGAAACATTTAAGNNN
NNNNNNNNNNNNNNNNNNNTTATGTCAAAAAGTTTAGAAACATGTAAGAA
ACATTTAAGGGTCAAAAGGCCGATTTCTTAAGAAACATTGAGGCTGCTTG
GTAAAACTAGTTTCTTAAAAAAAAAAAAACGTGTATTTAGCATTGGCTAA
ATCACAGAATCTACACTATGATAAAGCTGCTGCAGTCTTTGGCGAACAAG
AATTCAAATTCAACAAACTGAATGTGATTAATAATTTTTATCCTTACGAA
TACGTGTATAAAACACTTCTCTCCATCATGGATGTAGGGGATATTCACCA
AAGATCAACAAATGAATTTTTTTTCAAGTTCAATATCTTAGACTATGAAT
CAGTTTATGCTGATTTTGGAAATGTTGAATTTCTAGCAAGTCGCCGAAAG
TCAGGTGATGTAGCATATATAAATAAGAACTTTTTATTGGTAGCTGAAAA
TTCGAACCGTTGTTCACTTCGCTTTCAAATTGAAGGCTTCGATGAGGAAA
ATTCAAAACTATACATTTTAAATCCGAAATGTTTCCAACGAAGGTTATTA
ATTTTTGATTGGAACGATAAAATAACAGAGAAAGATGATTCTGGCGAGGT
CTTATTTTATTTAGTAAGAAATTGACACATTTTATTTTCAGTTTGCTATT
TGAGGAGTTATGTATTTTGGAGTTCATCTAATGTTTCCAGCTCACCCAAA
TAGAGACTTTATACGCATGCGTGATTTTGCGTTCTTTTAAACTTTTAAAC
CACGTGTAATTCCCGTGATAAACAAAGAGGAATGAATCTATAGGGGTCTT
ACAGTCACTTTCGGTCGGGGTGTGGGTTGTGGAGGGCGATATATGTCGTT
CTTTGATAGTTAGGGTTAGGGTTTGTCCTTCTTTTTGTCGCTTTTTAATC
TGAAAACGTTAGATGAACAGTCTCTTTGTGCCACTGCATCAGAAGACATT
CGCAAGGCTGCACACCGCAATTTTCATACTTCAATGTTAATTATGTTAAA
AGAAACCAAAAAAATTATTATTGAAATCATAAAATTATGTAAAATATGCG
AAAAACTATGGGTAACATTCAGATATGGATCCAGCATCTTTAAATTGATG
AAATCAAATAACAAAAGCTTGGTCACCGACATTTTGAATTGTGTTATTAC
AAGTGCTTATAATTTTTTAATTTGTTGATACTTCAAAAGTATTTTATTTT
GTTAAATATTTCTGTTATGCGCAGTTTTGTAATTTTTCTGCGCACTTTTG
TAATACTGGGAAAAATTTGGTCGATTTTTTGTCAAAATTACTAATATGCA
CAGCTACGTGATGACAAAACTGCGCAGAAATTATATTACTGCGCAAAAAT
TACAAAACTGTGCAAAAATTACAATACTGATCATAACAATTTCTTACGAA
ACTGATTTTATTTCTTAAATATTTCTTACAAACGACTTATTTAATTGAAT
TAAGAATATGAAAAATTATTACCTTACCGATTTTGGCGAGGAGAAAAAGT
TGTAAAAAAATTAATTTGGTGAGAACTCTTGGCAAAACACAATTCTTTTA
TTTTGCCGAGAACTTAATTTTGACAAGGATTTATTTCGGCAAGTAAATCA
ATTTTCAATCTTTGCGGGAGCTAAATTTAGCGAACGACGTAGTGAATCAT
TTTCCATTCGCCTTCGATGTAGTAAGGAGCAAGTGTTCATTATTTAGCTT
CCTTGTCTAAAGATCTGTACCTTTTGATCCATAGCGAAGAAATAGTTAAT
TTATACCCTTTGTTATGAACAAAGAAATGTCTCACAATTTCCAGAAAACT
TAGCTCACGAAATACGAAGTTATTTTTCCATCAAGAATATATAAAGTGAA
TTTCCTCCAGAAATACAAGGGGAATTTTTCATCCGATAAATACAAATTGA
AATTTTCCTTTAAGAATACGTAAATTTTCCTTTAGAAATACAAAGTACAA
AGTTAATTCTCCTTCATAAATATTAAAATCGATTTTCATATACACACTTT
TTTATAAGAATAATGTACTTTGGCTGAGGGTGAGCATTATTCTTATTTTT
CTATTGCTCTAAACAATAGGCCTATTGTTCTAACTCTGAAATCTCACTCT
GATATTCTTATAGAAGTTATTCGTATAAAAGAAAGCGTGTATATGAAGAA
AAAGTCAAATTTTCTTGAAAAAATACATACTAAATTTTCTTTCAGAAATA
CAAAAACTCTTCCGATCCCGTTTCAATTTTTTAGGGATGCCCCTTTAAGA
TGCTCACTATGCAACCAAGCTTACAACAATCAAACCGATGTCAGGATAAG
AAAGTTTTTTTTTTCTAAACTAATTCTTTATGTTTAACAAACGATACAAT
GGTTGCCTTATTATTTCTTTCTCGCAAATTCTTTAGCCTGGGTATCCAAG
CTGTTTAAGTTTCTGCTGTTTACAGCTACTAATCCAGTGCAATAATAATT
GTCCCAAAAGGGGAATTCCCTCACCATCTTAAAACTGCAAGTGATTTTAA
AGTGCGTTTAAGTACGGTTGGAAAGTAAAGTTGTAACTCTAAGTAAGTAG
CCTAAGCCCGGGGTGAGGGTACTACCCTTGTCGACCGACGGGGGTGCTCC
GCTGAGGTTCGAAAAATGGATCCTACGTGGGACTCGAAATTTGCGAAAAA
AATGACCCTGAAATTCCAAAAATTTCTAAAATTTTCTACTTTTTCCCCAA
ATTTTACAAAAATAGGCACTCTACGAGGGACTTATTTTTCTATTTTGGTG
TTTTTGCGACCCTACCTGGGATTCGTGGAGGTTAAAAAAGGTACCCTGAC
CAGCGGAGTATCCCCGTAACCCATCTTGCCCTAGTACCCCCCCCCCGGAG
CCTAAGCCAGGTAGCCACGTCCCCTCCTTAATCGGAAAAGTCAATGAAGC
AAAGTGAAAGTACTAAATCGCAATCCTCTCCAGGGCGCCAGAACAATTTT
AAAATCAAGAAAAAAACGTGAAAATACCCAAAATTGTCAATGTATTTCGG
CACCCATTGTAGGTCTGGCTAGATGGTTGCAAGCCAAGGAAACTTTTCAT
CTGTGAGCAATCAAAAATTGCAGAGCTAATAGGCTGACAAATTCTATGAA
GCCACTCCGTCACCGAGACCTGTCGAGAGAGGACATGTTTGTCAAACGGT
ATATATGCTTTGCGCTTGAGATTGTATTTCTACTATCAAGCATTTTCCTA
TTGCTTTTCTTCTCAAGAAACATCCCTCAAAAGCATTGGATCGTGTTATC
AAAACCACATTAAATGTTCTATGCCACCAAAAAGAAAATGGTTGTGAATG
GATTGGAAAGATTGTTGAATATAAGGTCAGTAGCATGCCAGGACAAAGCC
TCCCAAGTATTTATTTCAATAATTCACGTCCGAGTCTAAAGACTTTTGTG
TCAAAAGTCGATATAACAGGGGATTGACAAATTTAGGGGAGTTGGATTTT
AATAAGACAAATAAGAAGTGGTATATAATTTTTAGGGCTCCAGGGTTATA
AACAGAAAACGATTACTGTACGACGCAGGGATAATAAGATTCTGAACCAT
CAATAGTGCATACTTTAAAAATTCATAAATCATCAACACTTTTACACACA
GGATCATGCGCCTATATGTCAATTCGTCAAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053076-exon-scaffold_225-1575043694:209518..209642 | TCONS_00053076-exon-scaffold_225-1575043694:209518..209642 | Clytia hemisphaerica | exon |
| TCONS_00053076-exon-scaffold_225-1575043694:201954..202008 | TCONS_00053076-exon-scaffold_225-1575043694:201954..202008 | Clytia hemisphaerica | exon |
| TCONS_00053076-exon-scaffold_225-1575043694:200918..201025 | TCONS_00053076-exon-scaffold_225-1575043694:200918..201025 | Clytia hemisphaerica | exon |
| TCONS_00053076-exon-scaffold_225-1575043694:200609..200641 | TCONS_00053076-exon-scaffold_225-1575043694:200609..200641 | Clytia hemisphaerica | exon |
| TCONS_00053076-exon-scaffold_225-1510915933:209518..209642 | TCONS_00053076-exon-scaffold_225-1510915933:209518..209642 | Clytia hemisphaerica | exon |
| TCONS_00053076-exon-scaffold_225-1510915933:201954..202008 | TCONS_00053076-exon-scaffold_225-1510915933:201954..202008 | Clytia hemisphaerica | exon |
| TCONS_00053076-exon-scaffold_225-1510915933:200918..201025 | TCONS_00053076-exon-scaffold_225-1510915933:200918..201025 | Clytia hemisphaerica | exon |
| TCONS_00053076-exon-scaffold_225-1510915933:200609..200641 | TCONS_00053076-exon-scaffold_225-1510915933:200609..200641 | Clytia hemisphaerica | exon |
| TCONS_00053076-exon-scaffold_225-1491911889:209518..209642 | TCONS_00053076-exon-scaffold_225-1491911889:209518..209642 | Clytia hemisphaerica | exon |
| TCONS_00053076-exon-scaffold_225-1491911889:201954..202008 | TCONS_00053076-exon-scaffold_225-1491911889:201954..202008 | Clytia hemisphaerica | exon |
| TCONS_00053076-exon-scaffold_225-1491911889:200918..201025 | TCONS_00053076-exon-scaffold_225-1491911889:200918..201025 | Clytia hemisphaerica | exon |
| TCONS_00053076-exon-scaffold_225-1491911889:200609..200641 | TCONS_00053076-exon-scaffold_225-1491911889:200609..200641 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_225 | supercontig | scaffold_225:200609..209642 - |
Blast
The following BLAST results are available for this feature:
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