TCONS_00053050 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053050
Unique NameTCONS_00053050
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1174

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053050 ID=TCONS_00053050|Name=TCONS_00053050|organism=Clytia hemisphaerica|type=transcript|length=1174bp
ttgtatttcaaaataaatgaagAGTTTCAAAAGAGAATAAGTTATAATCT
TTGTACTTCTAAAGGAAAAAGAGGTTTAAACCTTAAATTTCTTAAAGGGA
AATAAAGGAGAAATAAACTTCATTCGTCTTTATCCTGTCCAATGTAAAAA
GAAATCTCTATCCACCTTActttaaatgacaatttttaagtgctctttgT
ACTTTCAAAGGGAAATGAAGTCAATTTCGTAATTTCGTCCTCGTGACGAT
TTGCTTTTCTATATAGGATGTTGCAAATCGATTTAATAACCGTCAAAATT
GATGCATAGTGCGAGTTTGGTTAGTCTACATTAAAAAGCATTTTCCTGGC
TTAGAATTAGTTGTAACATTTGGGTTCGTCGCTTCGGCAGCTGCATCAAA
AAGTTCTTTCACTCCTCTTCCTTCAACACTCGAGCATTCAAAATAACCTA
CAGCTTTAATTTTTTGAGCCAGCTTTTTACCTTCAACACTCGAGCATTCA
AAATAACCTACAGCTTTAATTTTTTGAGCCAGCTTTTTACCTTCAACATT
AGTTATTGGTTTTTGATTATGCTCTGCTAACCTATCAAGATAGAACTGGT
CAGTTCTCATATCTGTTTGTGTACCACACAACACAATGGGTGCTTTTGAT
GCATGTTTTTGTACAAAAGGGTACCAATATTCTTCAATGTTATCAAAACT
CTTTCTAGACCCAATAGAAAAACAAAGAACTACAACGTCAGCTCTTTCAT
AACCAAGATGACGTAGCCGATCCCAGTCCTCGCCGCCTCCTTCATGATCA
TCATAATAAATCCCTACTTTTTCTccagtttttttatatttgtatatttt
tggtcCATAGTCAGTTTCAACTTTAACAGGTATGTATTTAGGCTCCTTTT
TCTCAAGGAAATAATAAAGGTACATGGAGGTTTTACCGACAGCTCCATCA
CCACCAAACATAACACCTTTTACTGGTAAATTCTCATCTCCGATTTCTTT
TCTGATGCATTCTAGTGTTACTGTTTCATTTTGTGCCATATTTTTGTAAT
ATTCGTTCTAAAACAGGAAAGTATCCTAAAAATacatataaaatatatat
acaCATATTTCTGTTTGACTCATAATATTAGACATTGTCAAAGCAAATCC
ACTTAACAAATTTATGGAATGACT
Run BLAST on NCBI

transcript from alignment at scaffold_225:103918..105928+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053050 ID=TCONS_00053050|Name=TCONS_00053050|organism=Clytia hemisphaerica|type=transcript|length=2011bp|location=Sequence derived from alignment at scaffold_225:103918..105928+ (Clytia hemisphaerica)
ttgtatttcaaaataaatgaagAGTTTCAAAAGAGAATAAGTTATAATCT
TTGTACTTCTAAAGGAAAAAGAGGTTTAAACCTTAAATTTCTTAAAGGGA
AATAAAGGAGAAATAAACTTCATTCGTCTTTATCCTGTCCAATGTAAAAA
GAAATCTCTATCCACCTTActttaaatgacaatttttaagtgctctttgT
ACTTTCAAAGGGAAATGAAGTCAATTTCGTAATTTCGTCCTCGTGACGAT
TTGCTTTTCTATATAGGATGTTGCAAATCGATTTAATAACCGTCAAAATT
GATGCATAGTGCGAGTTTGGTTAGTCTACATTAAAAAGCATTTTCCTGGC
TTAGAATTAGTTGTAACATTTGGGTTCGTCGCTTCGGCAGCTGCATCAAA
AAGTTCTTTCACTCCTCTTCCTTCAACACTCGAGCATTCAAAATAACCTA
CAGCTTTAATTTTTTGAGCCAGCTTTTTACCTTCAACATTAGTTATTGGT
TTTTGATTATGCTCTGCTAACCTATCAAGATAGAACTGGTCAGTTCTCAT
ATCTGTTTGTGTACCACACAACACAATGGGTGCTTTTGATGCATGTTTTT
GTACAAAAGGGTACCAATATTCTTCAATGTTATCAAAACTCTTTCTAGAT
NATGATGTTGTCGTCAAAGGGTCATATGGAAACACAACATCGTATACGTT
AATCATAGAATTATTCAACGATTTAAGGTAAAGTAAAATCTAAGCGAATT
TCatttcttgaaagaaaattttgtgtattttcaaaggaagataAATGTAA
GGAAAATCATTggaagtttattttttttaacttttaaacttttaaaggaa
aattaagTCTAACCTTTGTATATTCCAAGGAGAGCAAActatattctttg
tatttcaaaataaatgaagAGTTTCAAAAGAGAATAAGTTATAATCTTTG
TACTTCTAAAGGAAAAAGAGGTTTAAACCTTAAATTTCTTAAAGGGAAAT
AAAGGAGAAATAAACTTCATTCGTCTTTATCCTGTCCAATGTAAAAAGAA
ATCTCTATCCACCTTActttaaatgacaatttttaagtgctctttgTACT
TTCAAAGGGAAATGAAGTCAATTTCGTAATTTCGTCCTCGTGACGATTTG
CTTTTCTATATAGGATGTTGCAAATCGATTTAATAACCGTCAAAATTGAT
GCATAGTGCGAGTTTGGTTAGTCTACATTAAAAAGCATTTTCCTGGCTTA
GAATTAGTTGTAACATTTGGGTTCGTCGCTTCGGCAGCTGCATCAAAAAG
TTCTTTCACTCCTCTTCCTTCAACACTCGAGCATTCAAAATAACCTACAG
CTTTAATTTTTTGAGCCAGCTTTTTACCTTCAACATTAGTTATTGGTTTT
TGATTATGCTCTGCTAACCTATCAAGATAGAACTGGTCAGTTCTCATATC
TGTTTGTGTACCACACAACACAATGGGTGCTTTTGATGCATGTTTTTGTA
CAAAAGGGTACCAATATTCTTCAATGTTATCAAAACTCTTTCTAGACCCA
ATAGAAAAACAAAGAACTACAACGTCAGCTCTTTCATAACCAAGATGACG
TAGCCGATCCCAGTCCTCGCCGCCTCCTTCATGATCATCATAATAAATCC
CTACTTTTTCTccagtttttttatatttgtatatttttggtcCATAGTCA
GTTTCAACTTTAACAGGTATGTATTTAGGCTCCTTTTTCTCAAGGAAATA
ATAAAGGTACATGGAGGTTTTACCGACAGCTCCATCACCACCAAACATAA
CACCTTTTACTGGTAAATTCTCATCTCCGATTTCTTTTCTGATGCATTCT
AGTGTTACTGTTTCATTTTGTGCCATATTTTTGTAATATTCGTTCTAAAA
CAGGAAAGTATCCTAAAAATacatataaaatatatatacaCATATTTCTG
TTTGACTCATAATATTAGACATTGTCAAAGCAAATCCACTTAACAAATTT
ATGGAATGACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033508XLOC_033508Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053050-exon-scaffold_225-1491911889:103918..104404TCONS_00053050-exon-scaffold_225-1491911889:103918..104404Clytia hemisphaericaexon
TCONS_00053050-exon-scaffold_225-1510915933:103918..104404TCONS_00053050-exon-scaffold_225-1510915933:103918..104404Clytia hemisphaericaexon
TCONS_00053050-exon-scaffold_225-1575043694:103918..104404TCONS_00053050-exon-scaffold_225-1575043694:103918..104404Clytia hemisphaericaexon
TCONS_00053050-exon-scaffold_225-1491911889:105242..105928TCONS_00053050-exon-scaffold_225-1491911889:105242..105928Clytia hemisphaericaexon
TCONS_00053050-exon-scaffold_225-1510915933:105242..105928TCONS_00053050-exon-scaffold_225-1510915933:105242..105928Clytia hemisphaericaexon
TCONS_00053050-exon-scaffold_225-1575043694:105242..105928TCONS_00053050-exon-scaffold_225-1575043694:105242..105928Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_225supercontigscaffold_225:103918..105928 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.611	5.0147	3.4042	2.07622	0.995415	0.548481	1.96169	0.429349	0.360509	0.355136	1.87141	0.303953	0.489148	0.816498	0.782605	1.29531	1.1097	0.606276	0.122664	1.15273	1.4593	1.95937	2.68114	3.31017	0	0.882009	1.03826	0.963921	1.79132	1.86097
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR003578Small_GTPase_Rho
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00053050 vs. Swiss-Prot (Human)
Match: CDC42 (Cell division control protein 42 homolog OS=Homo sapiens GN=CDC42 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.158e-32
Identity = 67/161 (41.61%), Postives = 95/161 (59.01%), Query Frame = -1 
Query:  470 GDGAVGKTSMYLYYFLEKKEPKYIPVKVETDYGPKIYKYKKTGEKVGIYYDDHEGGGEDWDRLRHLGYERADVVVLCFSIGSRKSFDNIEEYWYPFVQKHASKAPIVLCGTQTDMRTDQFYLDRLAEHNQKPITNVEGKKLAQKIKAVGYFECSSVEGKKL 952
            GDGAVGKT + + Y   K   +Y+P  V  +Y   +      GE   +   D   G ED+DRLR L Y + DV ++CFS+ S  SF+N++E W P +  H  K P +L GTQ D+R D   +++LA++ QKPIT    +KLA+ +KAV Y ECS++  K L
Sbjct:   10 GDGAVGKTCLLISYTTNKFPSEYVPT-VFDNYAVTVMI---GGEPYTLGLFD-TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGL 165
The following BLAST results are available for this feature:
BLAST of TCONS_00053050 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDC421.158e-3241.61Cell division control protein 42 homolog OS=Homo s... [more]
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