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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053047 ID=TCONS_00053047|Name=TCONS_00053047|organism=Clytia hemisphaerica|type=transcript|length=780bp
NTTAAACATTTCATTTAAACCATCCACCAGATCAACTTCATCCACTTGAT
GGATAACTACTAACTCACGAACTGCACGATTCGTCTCGCGGAGCACGCTT
TCATTATGGTTCTTGTATGCGACTTTGACTTTCCGAACTTTTGAATCTCG
TCCTGGGAATACTCTCGAACGATACCGTACTGATATGTGGAATTGATGAG
GGAGTCATTCTTGAGGAACAACACGATGTCGCCCACCATGATGTCTCTGT
CGTTAATGAACCATTTGGGCTGATAAGTGATTTTTGGAACATGGTTGATC
AGCCAGTTGTCAAACCAAGTGTCGAAGATTTCGGTGTTGGTTTGAAGGAT
TTTCGATGGATTCTTGGAAACGATGAGTGGTTCGGTAGGGCTACGATCAT
TGTTACGTCCAAGCTTGAGACGGTTCGGTGTGATGAAATCCATTGATTCG
TAATCGGATACAATGCCATTGAGTGCCATAGGCAGGTCGTTCATGGAGTT
TGCTACTTCCGATGATAGTGTCTCCCATTGCAGGATCGATAGTCTCCTTC
CTTGGAATGATTTGTTGATTGATGATTTCACTTCTCGTATCTTACGTTCA
ACCTTTCCGTTATAATTATGTCCGCCGACAGGGCAAACTTCGAAATTCAT
CTTGACGTCGGTTGAACGGGTTGAATCTTGAAGGCGGTTTTTGAGATCTT
TGAACGAAATCCTTGAATCGTCACAGCCTTTGACCATTTGGCTGCCTTGA
TCGATGAACATATTCATTGGATAACCGTTA Run BLAST on NCBI protein sequence of TCONS_00053047-protein >TCONS_00053047-protein ID=TCONS_00053047-protein|Name=TCONS_00053047-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
NGYPMNMFIDQGSQMVKGCDDSRISFKDLKNRLQDSTRSTDVKMNFEVCP
VGGHNYNGKVERKIREVKSSINKSFQGRRLSILQWETLSSEVANSMNDLP
MALNGIVSDYESMDFITPNRLKLGRNNDRSPTEPLIVSKNPSKILQTNTE
IFDTWFDNWLINHVPKITYQPKWFINDRDIMVGDIVLFLKNDSLINSTYQ
YGIVREYSQDEIQKFGKSKSHTRTIMKACSARRIVQFVS Run BLAST on NCBI transcript from alignment at scaffold_224:128831..129610 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053047 ID=TCONS_00053047|Name=TCONS_00053047|organism=Clytia hemisphaerica|type=transcript|length=780bp|location=Sequence derived from alignment at scaffold_224:128831..129610 (Clytia hemisphaerica)
TAACGGTTATCCAATGAATATGTTCATCGATCAAGGCAGCCAAATGGTCA
AAGGCTGTGACGATTCAAGGATTTCGTTCAAAGATCTCAAAAACCGCCTT
CAAGATTCAACCCGTTCAACCGACGTCAAGATGAATTTCGAAGTTTGCCC
TGTCGGCGGACATAATTATAACGGAAAGGTTGAACGTAAGATACGAGAAG
TGAAATCATCAATCAACAAATCATTCCAAGGAAGGAGACTATCGATCCTG
CAATGGGAGACACTATCATCGGAAGTAGCAAACTCCATGAACGACCTGCC
TATGGCACTCAATGGCATTGTATCCGATTACGAATCAATGGATTTCATCA
CACCGAACCGTCTCAAGCTTGGACGTAACAATGATCGTAGCCCTACCGAA
CCACTCATCGTTTCCAAGAATCCATCGAAAATCCTTCAAACCAACACCGA
AATCTTCGACACTTGGTTTGACAACTGGCTGATCAACCATGTTCCAAAAA
TCACTTATCAGCCCAAATGGTTCATTAACGACAGAGACATCATGGTGGGC
GACATCGTGTTGTTCCTCAAGAATGACTCCCTCATCAATTCCACATATCA
GTACGGTATCGTTCGAGAGTATTCCCAGGACGAGATTCAAAAGTTCGGAA
AGTCAAAGTCGCATACAAGAACCATAATGAAAGCGTGCTCCGCGAGACGA
ATCGTGCAGTTCGTGAGTTAGTAGTTATCCATCAAGTGGATGAAGTTGAT
CTGGTGGATGGTTTAAATGAAATGTTTAAN Coding sequence (CDS) from alignment at scaffold_224:128831..129610 >TCONS_00053047 ID=TCONS_00053047|Name=TCONS_00053047|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_224:128831..129610 (Clytia hemisphaerica)
AACGGTTATCCAATGAATATGTTCATCGATCAAGGCAGCCAAATGGTCAA
AGGCTGTGACGATTCAAGGATTTCGTTCAAAGATCTCAAAAACCGCCTTC
AAGATTCAACCCGTTCAACCGACGTCAAGATGAATTTCGAAGTTTGCCCT
GTCGGCGGACATAATTATAACGGAAAGGTTGAACGTAAGATACGAGAAGT
GAAATCATCAATCAACAAATCATTCCAAGGAAGGAGACTATCGATCCTGC
AATGGGAGACACTATCATCGGAAGTAGCAAACTCCATGAACGACCTGCCT
ATGGCACTCAATGGCATTGTATCCGATTACGAATCAATGGATTTCATCAC
ACCGAACCGTCTCAAGCTTGGACGTAACAATGATCGTAGCCCTACCGAAC
CACTCATCGTTTCCAAGAATCCATCGAAAATCCTTCAAACCAACACCGAA
ATCTTCGACACTTGGTTTGACAACTGGCTGATCAACCATGTTCCAAAAAT
CACTTATCAGCCCAAATGGTTCATTAACGACAGAGACATCATGGTGGGCG
ACATCGTGTTGTTCCTCAAGAATGACTCCCTCATCAATTCCACATATCAG
TACGGTATCGTTCGAGAGTATTCCCAGGACGAGATTCAAAAGTTCGGAAA
GTCAAAGTCGCATACAAGAACCATAATGAAAGCGTGCTCCGCGAGACGAA
TCGTGCAGTTCGTGAGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053047-exon-scaffold_224-1491911889:128831..129610 | TCONS_00053047-exon-scaffold_224-1491911889:128831..129610 | Clytia hemisphaerica | exon |
| TCONS_00053047-exon-scaffold_224-1510915933:128831..129610 | TCONS_00053047-exon-scaffold_224-1510915933:128831..129610 | Clytia hemisphaerica | exon |
| TCONS_00053047-exon-scaffold_224-1575043694:128831..129610 | TCONS_00053047-exon-scaffold_224-1575043694:128831..129610 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_224 | supercontig | scaffold_224:128831..129610 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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