TCONS_00053045 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053045
Unique NameTCONS_00053045
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length566

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053045 ID=TCONS_00053045|Name=TCONS_00053045|organism=Clytia hemisphaerica|type=transcript|length=566bp
ctagcagcgcTTGCtataaaaatacaaaggagatggatgtgcAGTCGTTT
ATATGGTCAACGAGAACAACAAGAAAAGTCAAGGTTTGGCCTGTTTCACA
AAAACTAGTGGCAATCTGagataaacaaaaagaatcaAGCAAAAGTGTTG
TTTTTTTGCGAAATACTTTGAAAAGCTCCATTTAAAAGTTAATTCTAGCG
AAATGCTaaatttccaatgaaagtttcTTCCCCTAAAGTAGCTGTTGCTT
CTAAAACGTGTAGCATTCCAAGCGAAATTGACCAATCGAATAACATTTAC
GTTTTTAATATATTGCCTTTTTAAAAAGGGCTCGGAatcaacttttgaaa
tctgattgtttttaatttgttcttgtGTTTAAGGCAAAGtcgaagttttt
tttatcaaaaatgtgtatttcaacagcATGACGTGAGCCCGATGTTAGTG
TGTACCAAAGTCAAACGATGAAGATGCGACGTTAAATATGGCGCCATAAT
GAGAACTACacggtttttttttataagaacaaactatataagaacataag
gcttcgaggcccaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_224:101966..102531

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053045 ID=TCONS_00053045|Name=TCONS_00053045|organism=Clytia hemisphaerica|type=transcript|length=566bp|location=Sequence derived from alignment at scaffold_224:101966..102531 (Clytia hemisphaerica)
ttttgggcctcgaagccttatgttcttatatagtttgttcttataaaaaa
aaaccgtGTAGTTCTCATTATGGCGCCATATTTAACGTCGCATCTTCATC
GTTTGACTTTGGTACACACTAACATCGGGCTCACGTCATgctgttgaaat
acacatttttgataaaaaaaacttcgaCTTTGCCTTAAACacaagaacaa
attaaaaacaatcagatttcaaaagttgatTCCGAGCCCTTTTTAAAAAG
GCAATATATTAAAAACGTAAATGTTATTCGATTGGTCAATTTCGCTTGGA
ATGCTACACGTTTTAGAAGCAACAGCTACTTTAGGGGAAgaaactttcat
tggaaatttAGCATTTCGCTAGAATTAACTTTTAAATGGAGCTTTTCAAA
GTATTTCGCAAAAAAACAACACTTTTGCTtgattctttttgtttatctCA
GATTGCCACTAGTTTTTGTGAAACAGGCCAAACCTTGACTTTTCTTGTTG
TTCTCGTTGACCATATAAACGACTgcacatccatctcctttgtattttta
taGCAAgcgctgctag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033503XLOC_033503Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053045-exon-scaffold_224-1491911889:101966..102531TCONS_00053045-exon-scaffold_224-1491911889:101966..102531Clytia hemisphaericaexon
TCONS_00053045-exon-scaffold_224-1510915933:101966..102531TCONS_00053045-exon-scaffold_224-1510915933:101966..102531Clytia hemisphaericaexon
TCONS_00053045-exon-scaffold_224-1575043694:101966..102531TCONS_00053045-exon-scaffold_224-1575043694:101966..102531Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_224supercontigscaffold_224:101966..102531 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.199884	0.195576	0	0.345239	0.134729	0.106632	1.02814	1.08965	0.168701	0.209608	0.610475	0.668666	0.931779	0.558487	0.226283	1.10108	2.01857	2.76794	0.427028	1.11062	3.63627	1.89009	1.26358	2.08119	1.28662	2.68426	0.430233	0.159943	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053045 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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