TCONS_00053044 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053044
Unique NameTCONS_00053044
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length784

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053044 ID=TCONS_00053044|Name=TCONS_00053044|organism=Clytia hemisphaerica|type=transcript|length=784bp
GGAattgatgatgacgtcatcacggAGGCAGTGATGTCATCAGAAAGTTT
CACATTTACCGCAGACCGGTGAAAAGTACCCTTAAATAAAATTGCAATTA
AAGTGTAACTAATAAAGATTTTTCAGATCTGTTTTGATATTCTGAAgcta
aaaataaagaatatctttaaaaaacataatactgaaaatgagaaaatttt
tcacaaaaataatgacgtcattgggcttttccacaaatagtccgtgcccc
ctgttgtggatatcggatatccagggggtgaaatatctacaagggagcgg
atattcAGGgggaaaaatgtattttcaagtaaaaaatacgatatccaagG
GGTAAAGCATCtttatcatctttataagaaaggGGGAGGtttgatacttc
gaaaaatcaatatcctcaacagtgggggtaaaattctTTCTGGAAAACCC
ATTTTTGGTGACATACCATTAATACCTaatctgtcaaaatttgaagttaa
tTGAATAACTACATCAAAAGTTATATtgcaattttaagattttggtattt
tacagggttttagctggattttatggcATGCATGCACTGAAACTCTAGTC
GGTGACAGAATGTCATCATCTTGTGAAAAGTAAATTCAACTATgtacaaa
atgaagaaattgcTTGTTAAATATTATAATTGTTGTAAATAGCCTAGAAC
ATTCTCTTACTGATTTCCGATTTTGGAAGTTGAGAAGAAGAGATCAGAGG
ACAATTACATGTAGAGCCCAGTCCTAACCTCANc
Run BLAST on NCBI

transcript from alignment at scaffold_224:90754..91537

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053044 ID=TCONS_00053044|Name=TCONS_00053044|organism=Clytia hemisphaerica|type=transcript|length=784bp|location=Sequence derived from alignment at scaffold_224:90754..91537 (Clytia hemisphaerica)
gNTGAGGTTAGGACTGGGCTCTACATGTAATTGTCCTCTGATCTCTTCTT
CTCAACTTCCAAAATCGGAAATCAGTAAGAGAATGTTCTAGGCTATTTAC
AACAATTATAATATTTAACAAgcaatttcttcattttgtacATAGTTGAA
TTTACTTTTCACAAGATGATGACATTCTGTCACCGACTAGAGTTTCAGTG
CATGCATgccataaaatccagctaaaaccctgtaaaataccaaaatctta
aaattgcaATATAACTTTTGATGTAGTTATTCAattaacttcaaattttg
acagattAGGTATTAATGGTATGTCACCAAAAATGGGTTTTCCAGAAaga
attttacccccactgttgaggatattgatttttcgaagtatcaaaCCTCC
CcctttcttataaagatgataaaGATGCTTTACCCcttggatatcgtatt
ttttacttgaaaatacatttttcccCCTgaatatccgctcccttgtagat
atttcaccccctggatatccgatatccacaacagggggcacggactattt
gtggaaaagcccaatgacgtcattatttttgtgaaaaattttctcatttt
cagtattatgttttttaaagatattctttatttttagcTTCAGAATATCA
AAACAGATCTGAAAAATCTTTATTAGTTACACTTTAATTGCAATTTTATT
TAAGGGTACTTTTCACCGGTCTGCGGTAAATGTGAAACTTTCTGATGACA
TCACTGCCTccgtgatgacgtcatcatcaatTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033502XLOC_033502Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053044-exon-scaffold_224-1491911889:90754..91537TCONS_00053044-exon-scaffold_224-1491911889:90754..91537Clytia hemisphaericaexon
TCONS_00053044-exon-scaffold_224-1510915933:90754..91537TCONS_00053044-exon-scaffold_224-1510915933:90754..91537Clytia hemisphaericaexon
TCONS_00053044-exon-scaffold_224-1575043694:90754..91537TCONS_00053044-exon-scaffold_224-1575043694:90754..91537Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_224supercontigscaffold_224:90754..91537 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.981	12.0057	3.15795	4.8709	8.24509	6.13128	9.14395	9.48465	5.37379	6.4873	8.81402	3.11519	10.0043	8.67198	7.00379	7.92758	4.49287	3.09631	10.8997	22.0562	2.24084	3.06155	4.4569	3.66956	1.72848	2.13424	2.03048	1.18911	3.36171	2.30447
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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