TCONS_00053040 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053040
Unique NameTCONS_00053040
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length231

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053040 ID=TCONS_00053040|Name=TCONS_00053040|organism=Clytia hemisphaerica|type=transcript|length=231bp
NNCTCGTCTAACTGGCACCTTTGCACATGAGGCCGCAAAATGCTTCAACA
ACTTGCCTGTTGATATCAAACGAATTGACAAAAAGGAAAGCTTTGCTGAT
AAATGTtggtatttttattttgataaggCGCTAGCCAAATCTCTAAGCTA
ATTCAATTCAACCTCGAGTCACAAACTTAATCAACACAGTCGATCTAGTA
TCTGATACTTACGTGTAGTCTTTAGCATTTG
Run BLAST on NCBI

transcript from alignment at scaffold_224:18307..18537

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053040 ID=TCONS_00053040|Name=TCONS_00053040|organism=Clytia hemisphaerica|type=transcript|length=231bp|location=Sequence derived from alignment at scaffold_224:18307..18537 (Clytia hemisphaerica)
CAAATGCTAAAGACTACACGTAAGTATCAGATACTAGATCGACTGTGTTG
ATTAAGTTTGTGACTCGAGGTTGAATTGAATTAGCTTAGAGATTTGGCTA
GCGccttatcaaaataaaaataccaACATTTATCAGCAAAGCTTTCCTTT
TTGTCAATTCGTTTGATATCAACAGGCAAGTTGTTGAAGCATTTTGCGGC
CTCATGTGCAAAGGTGCCAGTTAGACGAGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033498XLOC_033498Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053040-exon-scaffold_224-1491911889:18307..18537TCONS_00053040-exon-scaffold_224-1491911889:18307..18537Clytia hemisphaericaexon
TCONS_00053040-exon-scaffold_224-1510915933:18307..18537TCONS_00053040-exon-scaffold_224-1510915933:18307..18537Clytia hemisphaericaexon
TCONS_00053040-exon-scaffold_224-1575043694:18307..18537TCONS_00053040-exon-scaffold_224-1575043694:18307..18537Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_224supercontigscaffold_224:18307..18537 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.32291	0	0	5.30964	5.17845	2.34815	1.45892	3.85777	0	2.0773	3.59952	3.92561	8.72249	5.84075	3.30368	2.66225	0	5.27266	6.9364	16.499	2.88723	2.73387	2.90546	0	0	3.74096	6.76427	11.7994	0.80341	4.14134
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053040 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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