TCONS_00053031 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053031
Unique NameTCONS_00053031
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1789

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053031 ID=TCONS_00053031|Name=TCONS_00053031|organism=Clytia hemisphaerica|type=transcript|length=1789bp
GGGCGATTGAgttgtttattttcattttttttgtgaattctgaaaaagaa
agtgaaaatttaATGGCAATGGGGGAGAGGTGATATGATTAAAATTAGAT
GAGAATGCTGGTGAATAATTATTTGCTTGTGATTTTAATGCTAGCACCTA
TTCCTTACGTTTTGTTGAAAGAAACACCCAAAGAGTGCGGTATTGTACTt
ctacaaaaagaaaatgattcaCACTGTTTAAAAGAAAGAAGGAGAAATCT
ACTTttccaaaaacaattttttcaaataacaAAACCAGAGGATCATACTA
TATATGAAACAAATGCTAACTCAATTGGTTTTCACAAGATTTTGCCCACT
GTTCCCTGGTTGAATCGAAGCAAAGAAGAAATGGTGGCCTATTACAGTTT
CAATGACGAAGATTCGCGTTACATGGGCATGTTCGCTGCATACATTAATT
TCCTTAAAACTGTGGAAAAGAAAGTTCGTGATACTTTCTTCATTGCACTC
CGAAACACTACCGATGTTCCATCATTTCAATTCTACGAACGAATTAATCG
AGCTTTCGATGGAAGTGTCAAGAAATTGAACACGTTGTACGTGAGCAACC
CTTGTCACAATAAAGAATGTTTAAAAGAGACTTCTCAACAATACAACCCG
CTGGACGATGAAATGTTTGTTCAAAGAAGGCTGGCTGGACCATGTCCTTT
CAACTTGAAACAAGTCTCTACAAATGGTCCGACTGGGATTCTTCTCTCTA
CCCTAAAAAGAAAGATGAATTTGGATTTCGATTATGACCAAGCATTGACT
CGAGCGCTTGGTAAAAGAACCACTCTGGCAAAGGCGGTGAACAATGGACT
TGTGTTTGTGTTGTACCACCCAGAGATTGACCACATCACCGCATCTTCTC
CCTTCAGTGATCCTGCACAGGAAAGGACGTTTCGCAAAATGAACAATCCC
ATTGTTTTCTTCATACTGACAGATGACGgctttttgaaaatagtttccAT
TCAAAGGGACAGTGAGAAAGATAGTGAAGTCCTGCAGCCGATAGAGAGTG
ACCCGGAGGAATGGCTGAAAGTCAAAGGTGATGCTGAAATGGCGGACTCC
AATTACTGTCAAGGTTTTTACCATAGTGGTAAGATACACTTAGTAAGCAC
CATTTACTGTTTGGCATACCGAAGACACATCGATAAAAACCATCCGCTTT
ATGACTTCTTCTTGTACCATTGTGAGGGTACTGTACCGCACATTTCTTTG
GTTTATCACACTTTGCTGACGTCAAATGAACGATCAGATGCGTCATTAGG
TATGGGTCATCAAGGATTTTTGCAATTAGGAACCAAAGCGTTTAACAGTA
GAATGTATGGTGAACTTGATCTCCCATTCTTTTTAAAGCGAAAAGGCTTG
GATAACAAAAGAATCAAGTATTATCCCTTTCGAGATGATGCTGAGGTACT
TTGGGAGGAGCTGGCAGGGTTTACTAACGACGTCATCAGCGAAATCTACA
AAACTGATGACGAGGTTTCCCAAGACCCTTCCCTACAATCTTTCGCAACA
GAATTGTCATCTAAAGATGCCGGTAATATGGCTGGATTTCCGACATATTT
TGAAAGCAAACAATCAATACGATTGTTTCTTTTGAGATTTCTTTGGTTCA
ATGTCATCCATACAAGTTTGAACTATCCATTAAATATGCACAGTCAAACG
TTCAGTCCTACAAAGTCCTATCAAAACATACAAAGAGAGCCATTCTCAAC
TTATCTTCAAACGTTACCTGATTTGTACACAGCCGTTGT
Run BLAST on NCBI

transcript from alignment at scaffold_224:92870..100121+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053031 ID=TCONS_00053031|Name=TCONS_00053031|organism=Clytia hemisphaerica|type=transcript|length=7252bp|location=Sequence derived from alignment at scaffold_224:92870..100121+ (Clytia hemisphaerica)
GGGCGATTGAgttgtttattttcattttttttgtgaattctgaaaaagaa
agtgaaaatttaATGGCAATGGGGGAGAGGTGATATGATTAAAATTAGAT
GAGAATGCTGGTGAATAATTATTTGCTTGTGATTTTAATGCTAGCACCTA
TTCCTTACGTTTTGTTGAAAGGTAAGAATGCTCTCTTTTCTCTGTTTTGT
TTGAaataatttggcgaatttggcgaatgacGTCGAAATATCccgcaaaa
aaatgttttcgctCATTCGGAAAAATTTATTCTcgcgaaaaacctttttt
taattttcttggtgataTTTATGATTTTCATTATGCAATGCTTTCTACGG
AAGCACCCCGGCTTTTGCCAGTAGCggcaaatttcaaacaatttttctct
ttgcagcggagacaaaaaaggctgtaacttttgatagaattcgaataagA
TGGCGGtcttgtgcttgttgaaaagataatccgaAGTGGAatgttatcaa
aaaagaaaataaattaaaagatcgaaaaacaaacatgaaaaaggaagaag
aaacTCAGCTTCGCGTAGAACAATGCTATCATCTTCATTTTATCGGaaat
tctttaatcttagaacgtcataaatgcgaaaaaatattcatgaaattttc
attcagtcaaaaaatacagcttaaaactttgccctggttaacttgaaaaa
ggccttttttttgttatatttttatagtttttgtAGTCAATCGCGTTAAA
TTTTGAACTGTATCTTTCGATGGAACAAATttctttaaacaattttttca
cattaatgacgttctaagatcaaagaatcactcaTGTAAAAATTATAATC
ATAGGACgattattgaagaagttgattttcttcttcttcattttcaatct
tcattttccgatattttaaaagtttttttctttatgataatattccactc
ctgtttgtcttttcaacaagcgaaaaactgctatctaattcgagttctat
caaaaattatagtcttttttttggctgcaaattatattgagacagacttt
aatttacATAAAAGTAAATTTGTAACTGTTCATGTCCAGCACAATCTAAT
TCGATGAAAATGAATTCTCTTGATAATTCTTAAAGAAAATTATCAAGTCA
AACATGCAATGCGAAAATTTATGACATCTTTTAAATTTGCCTAAGTAGTT
CATTGTAAAAACACAGATAGTTGCAAATCTGACGGCTCGATTTTCTAACA
TTAAATATGTATTTGTGTTCGAAAGAAATTTATGTACTCTGATTttattc
tttgatttttcaGAAACACCCAAAGAGTGCGGTATTGTACTtctacaaaa
agaaaatgattcaCACTGTTTAAAAGAAAGAAGGAGAAATCTACTTttcc
aaaaacaattttttcaaataacaAAACCAGAGGATCATACTATATATGAA
ACAAATGCTAACTCAATTGGTTTTCACAAGATTTTGCCCACTGTTCCCTG
GTTGAATCGAAGCAAAGAAGAAATGGTGGCCTATTACAGTTTCAATGACG
AAGATTCGCGTTACATGGGCATGTTCGCTGCATACATTAATTTCCTTAAA
ACTGTGGAAAAGAAAGTTCGTGATACTTTCTTCATTGCACTCCGAAACAC
TACCGATGTTCCATCATTTCAATTCTACGAACGAATTAATCGAGCTTTCG
ATGGAAGTGTCAAGGTAAACTACTGTTCTTTGCATTCACCCAGCATTCCA
ATTTACACTAGTAATACATGGTTTACCTTCTTAAAAGCGTNGTCATTTCA
ATTCTACGAGCGAATTAATCGAGCTTTCGATGGAAGTGTCAAGGTAAACT
ACTGTTCTTTGCATTCACCCAGCTTTCCAATTTACACTAGTTATACATGG
TTTACCTTCTTAAAAGCGTAAACAattctactttaatgggataaattttc
gcggggattaattttcgcggatttcgcggatttgggtgtcatccgcgaaa
ataagtcccattggaaatttgaaaaaggcccNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNccaatagtgccatccgcgaaaattaatccccgcgaaatcttaaaat
ttcgcggatgagctcaaccgcgaaatttaatccccgcgaaaatttatccc
attaatcTTGCTTATCTTTGCTTTGGTAGAAATTGAACACGTTGTACGTG
AGCAACCCTTGTCACAATAAAGAATGTTTAAAAGAGACTTCTCAACAATA
CAACCCGCTGGACGATGAAATGTTTGTTCAAAGAAGGCTGGCTGGACCAT
GTCCTTTCAACTTGAAACAAGTCTCTACAAATGGTCAgttcttattttct
cattctcacgGTCGAATCATTATGGAGAAAACTCAGTAGAAAAATTACTT
ACAAACAAGGTtctttaattcgattttcaagggcaCCTTTATCGAATACA
GGAGCGTGTCGAATAGTAGGGAGTTTCTCTAATCTATTAAAACGAGGAAA
TTTTAGACTTTAGATTGATTCGGAGATAATTTGGACAAATATTGAAGGTC
TATCTATCACCAGCCGGGGAAAGAGAGATTGCAATTTATTTGTGATTCAC
TGTATTTCTCAACTAAATCTACTACTAGATTATTAGAATTCGATAATTTT
TTCCAGGTCCGACTGGGATTCTTCTCTCTACCCTAAAAAGAAAGATGAAT
TTGGATTTCGATTATGACCAAGCATTGACTCGAGCGCTTGGTAAAAGAAC
CACTCTGGCAAAGGTAAATAAATAGAAGTGATAAAAATTGTCCATAGGTT
TTATCTGGTAGAATTGTAAAACTACCTGAAAGAAAATGGTATTGTGAAGA
AAGTTAAAAGGAAACTTGGAACATGTTACCAATCACCATAAAAAATTAgt
tcttgccaaaattagttccattAATCACAAACAAATTACAATCTCACTTT
TTCCGGCTGGTGATAGGTATAGTAAATTCATTTTGGTCAGGTTAGGTTAT
CTGGTTCCGATAAATGACCTCTAAAAGTGGTGGATTTAGACGAAAACACA
GACCGTTCTGGTTATTTTAAGGCAATCCTGATCAGGGGCTTTGCAGGCTA
CCTCATATCTTCCTccgttttgagcgtaaaactcctacccTTTGTGGATA
TTATTATTGATGTCGGCTAATGCACTCCGTTTAGGCGGTGAACAATGGAC
TTGTGTTTGTGTTGTACCACCCAGAGATTGACCACATCACCGCATCTTCT
CCCTTCAGTGATCCTGCACAGGAAAGGACGTTTCGCAAAATGAACAATCC
CATTGTTTTCTTCATACTGACAGATGACGgctttttgaaaatagtttccA
TTCAAAGGGACAGTGAGAAAGGTATCTTGATTCGTTTTAACCATGGAGGt
atataaagtaaaacaggAGATGTATGTTATTATAACCAaactcgccctac
gattaaaaaagttacgaggtTTGCATATATcccatatatcgtgcattttt
aatgtgctcttttaaggccggtctccactttcgcgcgacatgagcgaaaa
ctttttgacgtttttgtaaggtcatcggtcgattgaaaaatgaagcaatt
ccattggtcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Ngcgacatgagcgaaaactttttgacgtttttgtaaggtcattggtcgat
tgaaaaatgaagcaattccattggtcgaaattgacgtaatggatgaaaaa
attagaacttccttcaactttttttttgttcgcgcgaaacttttttatga
cgtaatcttttctttaggcaaaaaaggttaagaaaaaaactgtcgcccat
ttcgcgcgaaaacTTTATCCGTTGGTTAAATCTTTTTGGGTCATTTCAGT
GTTAAAATTaaatgagacgagattcattgtttctgacatcgaTGTAATAA
agtatttttactaaaaatagcctacaaacttggcaatcctttaCAACAAA
TGGAGAGAATAAAGTTTTCTTCAAAGTAAACCCTGTTGCTTTATACTTTC
CTCTAAATTTTTCCAGCGcctttttgtctaaaaattgagtctgaaattgc
gtttgcttataaagaactttccATTTTCTGGCttaagaaagtattttttt
caaaacaaaatttcacgGTTAACAAAATGGAACAGAAACTTTTTTCGTTg
tgagcttagaatttcttttgatacatttcatAAGAGAAATCAAAAGACCA
ATTACTGAcaaattcaactcctgtttttctttatacttcGATGTTTGTTA
TACTTTCTTCTTCCTTCCCAATAATTTCCCAACTTATTTCTTGCTTCAGT
TTTTATTCTTCTGACACCTGTACTCATCAATTGTCCCGGTATCCTAATTA
TACTAATTTGAGGTTACAAATTATACCAGCATCGACCCTTACTCTTAGGT
TACCAAATAAATCAACACccttttttcttatctttttgattaccttttta
atttttactgGTTTTAACTAGATAGTGAAGTCCTGCAGCCGATAGAGAGT
GACCCGGAGGAATGGCTGAAAGTCAAAGGTGATGCTGAAATGGCGGACTC
CAATTACTGTCAAGGTTTTTACCATAGTGGTAAGATACACTTAGTAAGCA
CCATTTACTGTTTGGCATACCGAAGACACATCGATAAAAACCATCCGCTT
TATGACTTCTTCTTGTACCATTGTGAGGGTACTGTACCGCACATTTCTTT
GGTTTATCACACTTTGCTGACGTCAAATGAACGATCAGATGCGTCATTAG
GTATGGGTCATCAAGGATTTTTGCAATTAGGAACCAAAGCGTTTAACAGT
AGAATGTATGGTGAACTTGATCTCCCATTCTTTTTAAAGGTAATTATTTC
TTTCGATTCAAATGATTTGAATCAGATGATGATGTTTTATGCTTTTTTCG
ATGATTAAGCTGACTGCAGACCTTCTTCTAATTTTACTTTCACCCTTTCT
ACTTNATTTTTTCGATGACTAAGCTGACTGCAGACCTTCTTCTAATTTTA
CTTTCACCCTTTCTACTTTCGTATtggatggaaaaaataaaataaatcat
aTCAGACGCAAGCAACCTTTATTATCTTTGTCTTTTTTCAGCGAAAAGGC
TTGGATAACAAAAGAATCAAGTATTATCCCTTTCGAGATGATGCTGAGGT
ACTTTGGGAGGAGCTGGCAGGGTTTACTAACGACGTCATCAGCGAGTAAG
TTTTTGTTTGATACCTTTACAATTTAAATGTCACATTTTCGTTTGGCATA
GTGCTGAAATCTACTTTTCGGTGTTAGAACATGTCGTAAAAGCAGTGTTG
AAAGTAGGTACAGTAGAAATCATTGGATAGTTTacttttcatttaatttt
ctgGCTTACTCTTCTGTAcagaattcagtcaaatcagCTACAGTATATCA
ACAGTTAAGGTATTAACGAGGTTAATGACTATAGTGAACCACAATCGAGC
TATTAAAAAGGAAAGTGGCTTCATTGGTTTTATAGAATCTACAAAACTGA
TGACGAGGTTTCCCAAGACCCTTCCCTACAATCTTTCGCAACAGAATTGT
CATCTAAAGATGCCGGTAATGTAAGTGCgccatttttcagtttttttctc
gTACGTTTAGCCGTGATTTTAAAGATTTGTTccattttcttgtattttta
aaggagaaTATCATTCTTTTATCATCAACCTGAAAAATTTAAGCCATCTA
ATTGACTAGAGAAGCAATATTTCCAGTATTTCATATTTATACCTAAAACT
ACGAGACCTCTTCAACATGAGGGGTGTGTAAGCGAGAGGTCACAATCTGT
AGAATTGTTTCTCTAATATAGTTGATCTAATCGTATAAAATAGAATATGA
TGAAGTGTTTTTGCTCAACAATATGCGTTTCTGTAAGGGGTCCCTTAGTG
CAAAGTGAGCAGAAGTAAATGCATATTTTCTCACTCTGAAAACTATTTGA
CGACGCATTTCTATCGAAAGATTtccaaacaaaaaatatttttcagattt
cGTTTTTTAAGACGGAAACAAGTATgtctcaaaaattataaaaaatttaa
aaaatttacttaAGGTAAAACAATCTTCTTTAATTTTCAGATGGCTGGAT
TTCCGACATATTTTGAAAGCAAACAATCAATACGATTGTTTCTTTTGAGA
TTTCTTTGGTTCAATGTCATCCATACAAGTTTGAACTATCCATTAAATAT
GCACAGTCAAACGTTCAGTCCTACAAAGTCCTATCAAAACATACAAAGAG
AGCCATTCTCAACTTATCTTCAAACGTTACCTGATTTGTACACAGCCGTT
GT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033492XLOC_033492Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053031-exon-scaffold_224-1491911889:92870..93040TCONS_00053031-exon-scaffold_224-1491911889:92870..93040Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1510915933:92870..93040TCONS_00053031-exon-scaffold_224-1510915933:92870..93040Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1575043694:92870..93040TCONS_00053031-exon-scaffold_224-1575043694:92870..93040Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1491911889:94183..94583TCONS_00053031-exon-scaffold_224-1491911889:94183..94583Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1510915933:94183..94583TCONS_00053031-exon-scaffold_224-1510915933:94183..94583Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1575043694:94183..94583TCONS_00053031-exon-scaffold_224-1575043694:94183..94583Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1491911889:95699..95852TCONS_00053031-exon-scaffold_224-1491911889:95699..95852Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1510915933:95699..95852TCONS_00053031-exon-scaffold_224-1510915933:95699..95852Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1575043694:95699..95852TCONS_00053031-exon-scaffold_224-1575043694:95699..95852Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1491911889:96176..96282TCONS_00053031-exon-scaffold_224-1491911889:96176..96282Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1510915933:96176..96282TCONS_00053031-exon-scaffold_224-1510915933:96176..96282Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1575043694:96176..96282TCONS_00053031-exon-scaffold_224-1575043694:96176..96282Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1491911889:96704..96890TCONS_00053031-exon-scaffold_224-1491911889:96704..96890Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1510915933:96704..96890TCONS_00053031-exon-scaffold_224-1510915933:96704..96890Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1575043694:96704..96890TCONS_00053031-exon-scaffold_224-1575043694:96704..96890Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1491911889:98291..98658TCONS_00053031-exon-scaffold_224-1491911889:98291..98658Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1510915933:98291..98658TCONS_00053031-exon-scaffold_224-1510915933:98291..98658Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1575043694:98291..98658TCONS_00053031-exon-scaffold_224-1575043694:98291..98658Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1491911889:98911..99014TCONS_00053031-exon-scaffold_224-1491911889:98911..99014Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1510915933:98911..99014TCONS_00053031-exon-scaffold_224-1510915933:98911..99014Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1575043694:98911..99014TCONS_00053031-exon-scaffold_224-1575043694:98911..99014Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1491911889:99305..99389TCONS_00053031-exon-scaffold_224-1491911889:99305..99389Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1510915933:99305..99389TCONS_00053031-exon-scaffold_224-1510915933:99305..99389Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1575043694:99305..99389TCONS_00053031-exon-scaffold_224-1575043694:99305..99389Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1491911889:99910..100121TCONS_00053031-exon-scaffold_224-1491911889:99910..100121Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1510915933:99910..100121TCONS_00053031-exon-scaffold_224-1510915933:99910..100121Clytia hemisphaericaexon
TCONS_00053031-exon-scaffold_224-1575043694:99910..100121TCONS_00053031-exon-scaffold_224-1575043694:99910..100121Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_224supercontigscaffold_224:92870..100121 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.21403	0.235528	0.121258	0.0378611	0.276553	0.245971	1.38194	1.54497	0.314387	0.417853	1.24118	1.09272	0.904892	0.473144	0.785973	1.92158	3.25759	4.92232	0.198827	0.0666582	2.16644	1.6182	1.40299	1.0086	1.78068	2.68475	0.0367115	0.0657183	0.049845	0.0603319
Blast
[Close]
BLAST of TCONS_00053031 vs. Swiss-Prot (Human)
Match: LOX5 (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.644e-20
Identity = 72/296 (24.32%), Postives = 136/296 (45.95%), Query Frame = 3 
Query:  804 ALGKRTTLAKAVNNGLVFVLYHPEIDHITASSPFSDPAQERTFRKMNNPIVFFILTDDGFLKIVSIQRDSEKDSEVLQPIESDPE-EWLKVKGDAEMADSNYCQGFYHSGKIHLVSTIYCLAYRRHIDKNHPLYDFFLYHCEGTVPHISLVYHTLLTSNERSDASLGMGHQGFLQLGTKAFNSRMYGELDLPFFLKRKGLDNKR-IKYYPFRDDAEVLWEELAGFTNDVISEIYKTDDEVSQDPSLQSFATE--LSSKDAGNMAGFPTYFESKQSIRLFLLRFLW-FNVIHTSLNY 1676
            +L ++ +L + V  G +F++    +D I A+   +DP    T + +  PI          +  ++IQ +     E    + SD + +WL  K     +D +  Q   H  + HLVS ++ +A  R +   HP++   + H   T+   +     L+      D +   G  G +Q+  +A     Y  L  P  +K +G+++K  I YY +RDD  ++WE +  FT +V+   Y+ D  V +DP LQ F  +  +        +GFP   +S++ +  +L   ++  +  H ++N+
Sbjct:  266 SLERQLSLEQEVQQGNIFIVDFELLDGIDANK--TDPC---TLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENPIFLPSDAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVYVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNF 556
The following BLAST results are available for this feature:
BLAST of TCONS_00053031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LOX51.644e-2024.32Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALO... [more]
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