TCONS_00053028 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053028
Unique NameTCONS_00053028
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1796

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053028 ID=TCONS_00053028|Name=TCONS_00053028|organism=Clytia hemisphaerica|type=transcript|length=1796bp
CCATGCTGAAAATGATCAAGTTTATATTTGTCGTTTGATTTGTTTAAACA
TAAATAATCTTTCATTTACTTATGGGATGATTCATTTTACGAGAGTTTAC
TAAATTTACAACAAGGGCGATTGAgttgtttattttcattttttttgtga
attctgaaaaagaaagtgaaaatttaATGGCAATGGGGGAGAGGTGATAT
GATTAAAATTAGATGAGAATGCTGGTGAATAATTATTTGCTTGTGATTTT
AATGCTAGCACCTATTCCTTACGTTTTGTTGAAAGAAACACCCAAAGAGT
GCGGTATTGTACTtctacaaaaagaaaatgattcaCACTGTTTAAAAGAA
AGAAGGAGAAATCTACTTttccaaaaacaattttttcaaataacaAAACC
AGAGGATCATACTATATATGAAACAAATGCTAACTCAATTGGTTTTCACA
AGATTTTGCCCACTGTTCCCTGGTTGAATCGAAGCAAAGAAGAAATGGTG
GCCTATTACAGTTTCAATGACGAAGATTCGCGTTACATGGGCATGTTCGC
TGCATACATTAATTTCCTTAAAACTGTGGAAAAGAAAGTTCGTGATACTT
TCTTCATTGCACTCCGAAACACTACCGATGTTCCATCATTTCAATTCTAC
GAACGAATTAATCGAGCTTTCGATGGAAGTGTCAAGAAATTGAACACGTT
GTACGTGAGCAACCCTTGTCACAATAAAGAATGTTTAAAAGAGACTTCTC
AACAATACAACCCGCTGGACGATGAAATGTTTGTTCAAAGAAGGCTGGCT
GGACCATGTCCTTTCAACTTGAAACAAGTCTCTACAAATGGCGGTGAACA
ATGGACTTGTGTTTGTGTTGTACCACCCAGAGATTGACCACATCACCGCA
TCTTCTCCCTTCAGTGATCCTGCACAGGAAAGGACGTTTCGCAAAATGAA
CAATCCCATTGTTTTCTTCATACTGACAGATGACGgctttttgaaaatag
tttccATTCAAAGGGACAGTGAGAAAGATAGTGAAGTCCTGCAGCCGATA
GAGAGTGACCCGGAGGAATGGCTGAAAGTCAAAGGTGATGCTGAAATGGC
GGACTCCAATTACTGTCAAGGTTTTTACCATAGTGGTAAGATACACTTAG
TAAGCACCATTTACTGTTTGGCATACCGAAGACACATCGATAAAAACCAT
CCGCTTTATGACTTCTTCTTGTACCATTGTGAGGGTACTGTACCGCACAT
TTCTTTGGTTTATCACACTTTGCTGACGTCAAATGAACGATCAGATGCGT
CATTAGGTATGGGTCATCAAGGATTTTTGCAATTAGGAACCAAAGCGTTT
AACAGTAGAATGTATGGTGAACTTGATCTCCCATTCTTTTTAAAGCGAAA
AGGCTTGGATAACAAAAGAATCAAGTATTATCCCTTTCGAGATGATGCTG
AGGTACTTTGGGAGGAGCTGGCAGGGTTTACTAACGACGTCATCAGCGAA
ATCTACAAAACTGATGACGAGGTTTCCCAAGACCCTTCCCTACAATCTTT
CGCAACAGAATTGTCATCTAAAGATGCCGGTAATATGGCTGGATTTCCGA
CATATTTTGAAAGCAAACAATCAATACGATTGTTTCTTTTGAGATTTCTT
TGGTTCAATGTCATCCATACAAGTTTGAACTATCCATTAAATATGCACAG
TCAAACGTTCAGTCCTACAAAGTCCTATCAAAACATACAAAGAGAGCCAT
TCTCAACTTATCTTCAAACGTTACCTGATTTGTACACAGCCGTTGT
Run BLAST on NCBI

transcript from alignment at scaffold_224:91795..100121+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053028 ID=TCONS_00053028|Name=TCONS_00053028|organism=Clytia hemisphaerica|type=transcript|length=8327bp|location=Sequence derived from alignment at scaffold_224:91795..100121+ (Clytia hemisphaerica)
CCATGCTGAAAATGATCAAGTTTATATTTGTCGTTTGATTTGTTTAAACA
TAAATAATCTTTCATTTACTTATGGGATGATTCATTTTACGAGAGTTTAC
TAAATTTACAACAAGGGCGATTGAgttgtttattttcattttttttgtga
attctgaaaaagaaagtgaaaatttaATGGCAATGGGGGAGAGGTGATAT
GATTAAAATTAGATGAGAATGCTGGTGAATAATTATTTGCTTGTGATTTT
AATGCTAGCACCTATTCCTTACGTTTTGTTGAAAGGTAAGAATGCTCTCT
TTTCTCTGTTTTGTTTGAaataatttggcgaatttggcgaatgacGTCGA
AATATCccgcaaaaaaatgttttcgctCATTCGGAAAAATTTATTCTcgc
gaaaaacctttttttaattttcttggtgataTTTATGATTTTCATTATGC
AATGCTTTCTACGGAAGCACCCCGGCTTTTGCCAGTAGCggcaaatttca
aacaatttttctctttgcagcggagacaaaaaaggctgtaacttttgata
gaattcgaataagATGGCGGtcttgtgcttgttgaaaagataatccgaAG
TGGAatgttatcaaaaaagaaaataaattaaaagatcgaaaaacaaacat
gaaaaaggaagaagaaacTCAGCTTCGCNccgtgatgacgtcatcatcaa
tTCCTTTCATGCTAGAGAGCATTTCTGACAAGTTTTAAGTACATACCACC
tctacatcaaaagttatgcaagagTGGCCGAAAACACACCCCCACGCCTT
GAAAATGGGAACCCCCAAAAAGCTTGATAATAATTCTCCCTTCTGGAGAA
TACAACTAAATGTCTTGTGTCTAAACAGCCATGTGCGAATACCTGGTATT
AGGGGTTATCTTTTTAATCGGAACAGAAATTAAACCATGTTCACGTTCGG
CCCGCAGTTATCCATGCTGAAAATGATCAAGTTTATATTTGTCGTTTGAT
TTGTTTAAACATAAATAATCTTTCATTTACTTATGGGATGATTCATTTTA
CGAGAGTTTACTAAATTTACAACAAGGGCGATTGAgttgtttattttcat
tttttttgtgaattctgaaaaagaaagtgaaaatttaATGGCAATGGGGG
AGAGGTGATATGATTAAAATTAGATGAGAATGCTGGTGAATAATTATTTG
CTTGTGATTTTAATGCTAGCACCTATTCCTTACGTTTTGTTGAAAGGTAA
GAATGCTCTCTTTTCTCTGTTTTGTTTGAaataatttggcgaatttggcg
aatgacGTCGAAATATCccgcaaaaaaatgttttcgctCATTCGGAAAAA
TTTATTCTcgcgaaaaacctttttttaattttcttggtgataTTTATGAT
TTTCATTATGCAATGCTTTCTACGGAAGCACCCCGGCTTTTGCCAGTAGC
ggcaaatttcaaacaatttttctctttgcagcggagacaaaaaaggctgt
aacttttgatagaattcgaataagATGGCGGtcttgtgcttgttgaaaag
ataatccgaAGTGGAatgttatcaaaaaagaaaataaattaaaagatcga
aaaacaaacatgaaaaaggaagaagaaacTCAGCTTCGCGTAGAACAATG
CTATCATCTTCATTTTATCGGaaattctttaatcttagaacgtcataaat
gcgaaaaaatattcatgaaattttcattcagtcaaaaaatacagcttaaa
actttgccctggttaacttgaaaaaggccttttttttgttatatttttat
agtttttgtAGTCAATCGCGTTAAATTTTGAACTGTATCTTTCGATGGAA
CAAATttctttaaacaattttttcacattaatgacgttctaagatcaaag
aatcactcaTGTAAAAATTATAATCATAGGACgattattgaagaagttga
ttttcttcttcttcattttcaatcttcattttccgatattttaaaagttt
ttttctttatgataatattccactcctgtttgtcttttcaacaagcgaaa
aactgctatctaattcgagttctatcaaaaattatagtcttttttttggc
tgcaaattatattgagacagactttaatttacATAAAAGTAAATTTGTAA
CTGTTCATGTCCAGCACAATCTAATTCGATGAAAATGAATTCTCTTGATA
ATTCTTAAAGAAAATTATCAAGTCAAACATGCAATGCGAAAATTTATGAC
ATCTTTTAAATTTGCCTAAGTAGTTCATTGTAAAAACACAGATAGTTGCA
AATCTGACGGCTCGATTTTCTAACATTAAATATGTATTTGTGTTCGAAAG
AAATTTATGTACTCTGATTttattctttgatttttcaGAAACACCCAAAG
AGTGCGGTATTGTACTtctacaaaaagaaaatgattcaCACTGTTTAAAA
GAAAGAAGGAGAAATCTACTTttccaaaaacaattttttcaaataacaAA
ACCAGAGGATCATACTATATATGAAACAAATGCTAACTCAATTGGTTTTC
ACAAGATTTTGCCCACTGTTCCCTGGTTGAATCGAAGCAAAGAAGAAATG
GTGGCCTATTACAGTTTCAATGACGAAGATTCGCGTTACATGGGCATGTT
CGCTGCATACATTAATTTCCTTAAAACTGTGGAAAAGAAAGTTCGTGATA
CTTTCTTCATTGCACTCCGAAACACTACCGATGTTCCATCATTTCAATTC
TACGAACGAATTAATCGAGCTTTCGATGGAAGTGTCAAGGTAAACTACTG
TTCTTTGCATTCACCCAGCATTCCAATTTACACTAGTAATACATGGTTTA
CCTTCTTAAAAGCGTNGTCATTTCAATTCTACGAGCGAATTAATCGAGCT
TTCGATGGAAGTGTCAAGGTAAACTACTGTTCTTTGCATTCACCCAGCTT
TCCAATTTACACTAGTTATACATGGTTTACCTTCTTAAAAGCGTAAACAa
ttctactttaatgggataaattttcgcggggattaattttcgcggatttc
gcggatttgggtgtcatccgcgaaaataagtcccattggaaatttgaaaa
aggcccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNccaatagtgccatccgcgaaa
attaatccccgcgaaatcttaaaatttcgcggatgagctcaaccgcgaaa
tttaatccccgcgaaaatttatcccattaatcTTGCTTATCTTTGCTTTG
GTAGAAATTGAACACGTTGTACGTGAGCAACCCTTGTCACAATAAAGAAT
GTTTAAAAGAGACTTCTCAACAATACAACCCGCTGGACGATGAAATGTTT
GTTCAAAGAAGGCTGGCTGGACCATGTCCTTTCAACTTGAAACAAGTCTC
TACAAATGGTCAgttcttattttctcattctcacgGTCGAATCATTATGG
AGAAAACTCAGTAGAAAAATTACTTACAAACAAGGTtctttaattcgatt
ttcaagggcaCCTTTATCGAATACAGGAGCGTGTCGAATAGTAGGGAGTT
TCTCTAATCTATTAAAACGAGGAAATTTTAGACTTTAGATTGATTCGGAG
ATAATTTGGACAAATATTGAAGGTCTATCTATCACCAGCCGGGGAAAGAG
AGATTGCAATTTATTTGTGATTCACTGTATTTCTCAACTAAATCTACTAC
TAGATTATTAGAATTCGATAATTTTTTCCAGGTCCGACTGGGATTCTTCT
CTCTACCCTAAAAAGAAAGATGAATTTGGATTTCGATTATGACCAAGCAT
TGACTCGAGCGCTTGGTAAAAGAACCACTCTGGCAAAGGTAAATAAATAG
AAGTGATAAAAATTGTCCATAGGTTTTATCTGGTAGAATTGTAAAACTAC
CTGAAAGAAAATGGTATTGTGAAGAAAGTTAAAAGGAAACTTGGAACATG
TTACCAATCACCATAAAAAATTAgttcttgccaaaattagttccattAAT
CACAAACAAATTACAATCTCACTTTTTCCGGCTGGTGATAGGTATAGTAA
ATTCATTTTGGTCAGGTTAGGTTATCTGGTTCCGATAAATGACCTCTAAA
AGTGGTGGATTTAGACGAAAACACAGACCGTTCTGGTTATTTTAAGGCAA
TCCTGATCAGGGGCTTTGCAGGCTACCTCATATCTTCCTccgttttgagc
gtaaaactcctacccTTTGTGGATATTATTATTGATGTCGGCTAATGCAC
TCCGTTTAGGCGGTGAACAATGGACTTGTGTTTGTGTTGTACCACCCAGA
GATTGACCACATCACCGCATCTTCTCCCTTCAGTGATCCTGCACAGGAAA
GGACGTTTCGCAAAATGAACAATCCCATTGTTTTCTTCATACTGACAGAT
GACGgctttttgaaaatagtttccATTCAAAGGGACAGTGAGAAAGGTAT
CTTGATTCGTTTTAACCATGGAGGtatataaagtaaaacaggAGATGTAT
GTTATTATAACCAaactcgccctacgattaaaaaagttacgaggtTTGCA
TATATcccatatatcgtgcatttttaatgtgctcttttaaggccggtctc
cactttcgcgcgacatgagcgaaaactttttgacgtttttgtaaggtcat
cggtcgattgaaaaatgaagcaattccattggtcNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNgcgacatgagcgaaaactttttga
cgtttttgtaaggtcattggtcgattgaaaaatgaagcaattccattggt
cgaaattgacgtaatggatgaaaaaattagaacttccttcaacttttttt
ttgttcgcgcgaaacttttttatgacgtaatcttttctttaggcaaaaaa
ggttaagaaaaaaactgtcgcccatttcgcgcgaaaacTTTATCCGTTGG
TTAAATCTTTTTGGGTCATTTCAGTGTTAAAATTaaatgagacgagattc
attgtttctgacatcgaTGTAATAAagtatttttactaaaaatagcctac
aaacttggcaatcctttaCAACAAATGGAGAGAATAAAGTTTTCTTCAAA
GTAAACCCTGTTGCTTTATACTTTCCTCTAAATTTTTCCAGCGccttttt
gtctaaaaattgagtctgaaattgcgtttgcttataaagaactttccATT
TTCTGGCttaagaaagtatttttttcaaaacaaaatttcacgGTTAACAA
AATGGAACAGAAACTTTTTTCGTTgtgagcttagaatttcttttgataca
tttcatAAGAGAAATCAAAAGACCAATTACTGAcaaattcaactcctgtt
tttctttatacttcGATGTTTGTTATACTTTCTTCTTCCTTCCCAATAAT
TTCCCAACTTATTTCTTGCTTCAGTTTTTATTCTTCTGACACCTGTACTC
ATCAATTGTCCCGGTATCCTAATTATACTAATTTGAGGTTACAAATTATA
CCAGCATCGACCCTTACTCTTAGGTTACCAAATAAATCAACACccttttt
tcttatctttttgattacctttttaatttttactgGTTTTAACTAGATAG
TGAAGTCCTGCAGCCGATAGAGAGTGACCCGGAGGAATGGCTGAAAGTCA
AAGGTGATGCTGAAATGGCGGACTCCAATTACTGTCAAGGTTTTTACCAT
AGTGGTAAGATACACTTAGTAAGCACCATTTACTGTTTGGCATACCGAAG
ACACATCGATAAAAACCATCCGCTTTATGACTTCTTCTTGTACCATTGTG
AGGGTACTGTACCGCACATTTCTTTGGTTTATCACACTTTGCTGACGTCA
AATGAACGATCAGATGCGTCATTAGGTATGGGTCATCAAGGATTTTTGCA
ATTAGGAACCAAAGCGTTTAACAGTAGAATGTATGGTGAACTTGATCTCC
CATTCTTTTTAAAGGTAATTATTTCTTTCGATTCAAATGATTTGAATCAG
ATGATGATGTTTTATGCTTTTTTCGATGATTAAGCTGACTGCAGACCTTC
TTCTAATTTTACTTTCACCCTTTCTACTTNATTTTTTCGATGACTAAGCT
GACTGCAGACCTTCTTCTAATTTTACTTTCACCCTTTCTACTTTCGTATt
ggatggaaaaaataaaataaatcataTCAGACGCAAGCAACCTTTATTAT
CTTTGTCTTTTTTCAGCGAAAAGGCTTGGATAACAAAAGAATCAAGTATT
ATCCCTTTCGAGATGATGCTGAGGTACTTTGGGAGGAGCTGGCAGGGTTT
ACTAACGACGTCATCAGCGAGTAAGTTTTTGTTTGATACCTTTACAATTT
AAATGTCACATTTTCGTTTGGCATAGTGCTGAAATCTACTTTTCGGTGTT
AGAACATGTCGTAAAAGCAGTGTTGAAAGTAGGTACAGTAGAAATCATTG
GATAGTTTacttttcatttaattttctgGCTTACTCTTCTGTAcagaatt
cagtcaaatcagCTACAGTATATCAACAGTTAAGGTATTAACGAGGTTAA
TGACTATAGTGAACCACAATCGAGCTATTAAAAAGGAAAGTGGCTTCATT
GGTTTTATAGAATCTACAAAACTGATGACGAGGTTTCCCAAGACCCTTCC
CTACAATCTTTCGCAACAGAATTGTCATCTAAAGATGCCGGTAATGTAAG
TGCgccatttttcagtttttttctcgTACGTTTAGCCGTGATTTTAAAGA
TTTGTTccattttcttgtatttttaaaggagaaTATCATTCTTTTATCAT
CAACCTGAAAAATTTAAGCCATCTAATTGACTAGAGAAGCAATATTTCCA
GTATTTCATATTTATACCTAAAACTACGAGACCTCTTCAACATGAGGGGT
GTGTAAGCGAGAGGTCACAATCTGTAGAATTGTTTCTCTAATATAGTTGA
TCTAATCGTATAAAATAGAATATGATGAAGTGTTTTTGCTCAACAATATG
CGTTTCTGTAAGGGGTCCCTTAGTGCAAAGTGAGCAGAAGTAAATGCATA
TTTTCTCACTCTGAAAACTATTTGACGACGCATTTCTATCGAAAGATTtc
caaacaaaaaatatttttcagatttcGTTTTTTAAGACGGAAACAAGTAT
gtctcaaaaattataaaaaatttaaaaaatttacttaAGGTAAAACAATC
TTCTTTAATTTTCAGATGGCTGGATTTCCGACATATTTTGAAAGCAAACA
ATCAATACGATTGTTTCTTTTGAGATTTCTTTGGTTCAATGTCATCCATA
CAAGTTTGAACTATCCATTAAATATGCACAGTCAAACGTTCAGTCCTACA
AAGTCCTATCAAAACATACAAAGAGAGCCATTCTCAACTTATCTTCAAAC
GTTACCTGATTTGTACACAGCCGTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033492XLOC_033492Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053028-exon-scaffold_224-1491911889:91795..92079TCONS_00053028-exon-scaffold_224-1491911889:91795..92079Clytia hemisphaericaexon
TCONS_00053028-exon-scaffold_224-1510915933:91795..92079TCONS_00053028-exon-scaffold_224-1510915933:91795..92079Clytia hemisphaericaexon
TCONS_00053028-exon-scaffold_224-1575043694:91795..92079TCONS_00053028-exon-scaffold_224-1575043694:91795..92079Clytia hemisphaericaexon
TCONS_00053028-exon-scaffold_224-1491911889:94183..94583TCONS_00053028-exon-scaffold_224-1491911889:94183..94583Clytia hemisphaericaexon
TCONS_00053028-exon-scaffold_224-1510915933:94183..94583TCONS_00053028-exon-scaffold_224-1510915933:94183..94583Clytia hemisphaericaexon
TCONS_00053028-exon-scaffold_224-1575043694:94183..94583TCONS_00053028-exon-scaffold_224-1575043694:94183..94583Clytia hemisphaericaexon
TCONS_00053028-exon-scaffold_224-1491911889:95699..95852TCONS_00053028-exon-scaffold_224-1491911889:95699..95852Clytia hemisphaericaexon
TCONS_00053028-exon-scaffold_224-1510915933:95699..95852TCONS_00053028-exon-scaffold_224-1510915933:95699..95852Clytia hemisphaericaexon
TCONS_00053028-exon-scaffold_224-1575043694:95699..95852TCONS_00053028-exon-scaffold_224-1575043694:95699..95852Clytia hemisphaericaexon
TCONS_00053028-exon-scaffold_224-1491911889:96704..96890TCONS_00053028-exon-scaffold_224-1491911889:96704..96890Clytia hemisphaericaexon
TCONS_00053028-exon-scaffold_224-1510915933:96704..96890TCONS_00053028-exon-scaffold_224-1510915933:96704..96890Clytia hemisphaericaexon
TCONS_00053028-exon-scaffold_224-1575043694:96704..96890TCONS_00053028-exon-scaffold_224-1575043694:96704..96890Clytia hemisphaericaexon
TCONS_00053028-exon-scaffold_224-1491911889:98291..98658TCONS_00053028-exon-scaffold_224-1491911889:98291..98658Clytia hemisphaericaexon
TCONS_00053028-exon-scaffold_224-1510915933:98291..98658TCONS_00053028-exon-scaffold_224-1510915933:98291..98658Clytia hemisphaericaexon
TCONS_00053028-exon-scaffold_224-1575043694:98291..98658TCONS_00053028-exon-scaffold_224-1575043694:98291..98658Clytia hemisphaericaexon
TCONS_00053028-exon-scaffold_224-1491911889:98911..99014TCONS_00053028-exon-scaffold_224-1491911889:98911..99014Clytia hemisphaericaexon
TCONS_00053028-exon-scaffold_224-1510915933:98911..99014TCONS_00053028-exon-scaffold_224-1510915933:98911..99014Clytia hemisphaericaexon
TCONS_00053028-exon-scaffold_224-1575043694:98911..99014TCONS_00053028-exon-scaffold_224-1575043694:98911..99014Clytia hemisphaericaexon
TCONS_00053028-exon-scaffold_224-1491911889:99305..99389TCONS_00053028-exon-scaffold_224-1491911889:99305..99389Clytia hemisphaericaexon
TCONS_00053028-exon-scaffold_224-1510915933:99305..99389TCONS_00053028-exon-scaffold_224-1510915933:99305..99389Clytia hemisphaericaexon
TCONS_00053028-exon-scaffold_224-1575043694:99305..99389TCONS_00053028-exon-scaffold_224-1575043694:99305..99389Clytia hemisphaericaexon
TCONS_00053028-exon-scaffold_224-1491911889:99910..100121TCONS_00053028-exon-scaffold_224-1491911889:99910..100121Clytia hemisphaericaexon
TCONS_00053028-exon-scaffold_224-1510915933:99910..100121TCONS_00053028-exon-scaffold_224-1510915933:99910..100121Clytia hemisphaericaexon
TCONS_00053028-exon-scaffold_224-1575043694:99910..100121TCONS_00053028-exon-scaffold_224-1575043694:99910..100121Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_224supercontigscaffold_224:91795..100121 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000653861	0	0.000281636	0	0	3.55878e-08	0.251936	0.325033	0.23285	0.00229812	0.205428	0	0.191585	0.6264	0.087831	0.105272	0.555928	0.179914	0.000857497	0	0.398089	0.557256	0.255886	0.690534	0.127564	0.590255	8.56449e-05	0	0	0.000359296
Blast
[Close]
BLAST of TCONS_00053028 vs. Swiss-Prot (Human)
Match: LOX5 (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.789e-20
Identity = 72/290 (24.83%), Postives = 132/290 (45.52%), Query Frame = 1 
Query:  829 SLQMAVNNGLVFVLYHPEIDHITASSPFSDPAQERTFRKMNNPIVFFILTDDGFLKIVSIQRDSEKDSEVLQPIESDPE-EWLKVKGDAEMADSNYCQGFYHSGKIHLVSTIYCLAYRRHIDKNHPLYDFFLYHCEGTVPHISLVYHTLLTSNERSDASLGMGHQGFLQLGTKAFNSRMYGELDLPFFLKRKGLDNKR-IKYYPFRDDAEVLWEELAGFTNDVISEIYKTDDEVSQDPSLQSFATE--LSSKDAGNMAGFPTYFESKQSIRLFLLRFLW-FNVIHTSLNY 1683
            SL+  V  G +F++    +D I A+   +DP    T + +  PI          +  ++IQ +     E    + SD + +WL  K     +D +  Q   H  + HLVS ++ +A  R +   HP++   + H   T+   +     L+      D +   G  G +Q+  +A     Y  L  P  +K +G+++K  I YY +RDD  ++WE +  FT +V+   Y+ D  V +DP LQ F  +  +        +GFP   +S++ +  +L   ++  +  H ++N+
Sbjct:  272 SLEQEVQQGNIFIVDFELLDGIDANK--TDPC---TLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENPIFLPSDAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVYVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNF 556
The following BLAST results are available for this feature:
BLAST of TCONS_00053028 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LOX52.789e-2024.83Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALO... [more]
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