TCONS_00053008 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053008
Unique NameTCONS_00053008
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1325

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053008 ID=TCONS_00053008|Name=TCONS_00053008|organism=Clytia hemisphaerica|type=transcript|length=1325bp
TGGAGATGGAGGATCTGAAGGTTTATCAGGAGGAGCGATTGCAGGGATAA
TTATCGGTGTCCTCGTTTTGGTGGTGCTCGTAGCTCTGGTGGTCTTATAT
CGCCTTGGAAAGATCGGTGGAGGTAGTGttgCAGCGACTTCAGAAAAATC
TCCCAATGAGCAAacagcaatgaaaaatgaaaaccaaAAAGTGTGAGACT
TCATACGTTAGAAATTTTGTGATTCGTTTCAATTGGAATGTGATGGATTG
TTAGCGTTAAAAATTTCACGAAATTATGGATTTCTATTGGAGGAATatga
taaataaaattgaaaattgattcgTGAAATTCTTAAGCTTATCCTGGACA
TTTGATCtcatataccgggtgacccacgaaaaagttcggacctttctcgg
cgtcttgaggccgaacaaatgtcccaaagtgctcggaattttggtattta
aaaagtaNNAacattaataattattaaaaacaccttttaaagtagttttt
gtttaaaaaccaagactagtttttatcaaaattggcactttcaaggaatt
ttctcaaaaactgtatatcaaaaacgtctaaaaatacctaatttgatacc
ccttttttacctgttttttacactatccgaaaagtgaattttgagtttaa
aagctcataactagggaacttgtgcgtcaaatttaaaaagcaatggctcg
gattttaagttaggatatctactttttaaataataaaactccaagcactt
tgggacatttgttcggcctcaagacgccgagaaacgtccgaactttttcg
tgggtcacccggtatggTGAACTCATCgaaattttcattgatttaaaatt
caaaacgtcATTACGGAATGAACATTCATTTTTAAATGCATCAAAAACAG
AAAGGAGATGTTAAAATCTCCACTGTAAAGGACTCGCTCCCAACCAGAGA
CTCCCAGTCTCGAATTTTATAAATACATAATAGTGTTGTGTTTTATGTTG
AGTTATTGTAATGTagtaaattttttgattttatctagaccttctttaaa
gatttttttaaattagctTGTCGAGGGAAAGTGAGAGCATATATGGTGAG
AGTGTATTAAACAAGATATTCTTTTCGGACTAAAAGACCTATTTTGAGAA
CTTCGATTTTCAAAGACCACACTCGTCCACAAATTTAGCCCTAAAAAAAG
AATGTTTTCTGATACGCCGGTAGTGTATTTGTGGCTGCCTACCCAAAAGC
TATTATTAAGATTGGTTCAATTTCTCGAACTTCAGAGTATAGCGTTTCGG
AGCAAATTTCCACATACGCCTTAAA
Run BLAST on NCBI

transcript from alignment at scaffold_223:66551..72582-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053008 ID=TCONS_00053008|Name=TCONS_00053008|organism=Clytia hemisphaerica|type=transcript|length=6032bp|location=Sequence derived from alignment at scaffold_223:66551..72582- (Clytia hemisphaerica)
TGGAGATGGAGGATCTGAAGGTTTATCAGGAGGAGCGATTGCAGGGATAA
TTATCGGTGTCCTCGTTTTGGTGGTGCTCGTAGCTCTGGTGGTCTTATAT
CGCCTTGGAAAGATCGGTGGAGGTAGTGGTAGGTTATGATCTGTTCTTTA
TCATTCAATTGCATGATTCTTCGTTAAAAAAAGATTTCATATGAAGATTC
TTTTTCTGCATATTGCAGGCCATTTCTTCAAATGATTTTGTGTAGCCTTG
AGTTCGGTATACCGTACTCGATAGTACTCCCAGTGAAAGTTAAATTTTCA
AATAGACCATATTGTCTCCCCATTGTTTTGTCAAATCACAGTCTCACTGC
GTGAAGCATGCATTCAATTTTCATCCCACCAATACACCTTTGCCTTCAAC
ACAGGAAAAAATTTTCGATTTCCAAGGTTGGAAATTCAATATTTTTGGGT
TGGAAATTTTGGTTTTATAATTGAAGGTTGGAAATTTGACCGATTACCTT
AAGCTGATTTGGAAAACGTAAATTACCCATAGGTTTTGTAGAATAAACCA
ATGCCCTTGAAAAATCAAGTGAAAAAAACCCATGTAGAAATGACAATTTT
CCAAGGCTGGTTGGAAAACATCAATTTTTGGGTGGGAAATTTTTATTTTC
CAAACAGTTTGGGAATTGTAAAAAAAGGTCAAAAATCGATGTGAAAATAC
ATATTTTTGTAAATTTGATACCTCAGGTTGAACAAATAGACTTTTTGGGT
CGGAAATTTGTGTTTCTCCCAAACAGTTTGGAAAACGTTAAAAAAATCCA
TGTGGAAATTACATTTTTGTGAAATTGAAACTCTTTCGATTGGAAAACTA
AACTTTTTGGGTTGAAAATTTGTGCATTTCCAAACAGTTTGGAAAACGTT
AATAATCCATGTAGTCCATGAGCTGAGGGCCTAATTTTGAGATTTTGGGC
TCAATGAGGTTACCAGACATATTATATACCAAAAGATCCCAAATTTTATG
TAGAGTGGAAATTTCCATGTTAGCAAGGTCAAAAAGTATGGAATCGAAAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTTTCTCTAAGACTTGAGCGCGGCTTTTCAGTTT
TCTAAACCCTAAATAGTTTTCTATCATTTTGAGGCTAACATTTTCAAAGG
AAGTCTTTTAGATTAGATCTAGACACGATAAGGTATGATCATCTTATATT
CACCTCGTCCAATGCAGGATTGCAAGTCATCCACTTGACAAACAAACCAC
CATCGTCGATTCCCCAACCATGTTCCGAAGGATCACATCTTTCAACTAAT
GGATTGAGACACATCCTCCAAATCTTCGCTTGATAGTTGGCCCTTTTGAT
GTGCTGGCTTAATACGTTTAGACATGGTGGAAGTCCTTCGCACGAAACCT
TTCCACTTTTTCGACAATATATATCGTAGCGTAGATCGTTTACTGAAATT
CCAAGTTTCAAGGCATCTTTCTTTCCATACATATGGCAGACAAAACTTTC
CAAAACTGATTGGGTTTCTTCACTTATGTTCCAGCTCATCCCAAGCTCTC
CAAATGCTTCAACGTACTCCTTCTTCTGTATCAAAATTTTCAAAGGTTTG
ATTTTTCCTCGTCCGGCGAAAGCGCTGATCGAATCACATCCTGTGAAGCA
ATGAAAACCAGGCAAAGCTTTGAGGAACATTTCTTGAGTGTAATCTGGTT
TGTTGATCTGTGAGTAGTAGTTTTTACATGCCAGGTTCAGATCAATAAGC
CTTCTGTTATCACCAGTTCCAGTTAGCATGAACAAATTGCAGCGAAGTGC
ATTGAGATTCGAAGCTGCAATGATGAATACATCTGTATCAGGAGTTGCAA
TGATTACTTTTTCATGATTTGAAGCTGCGTCTTTTGTGTGAAGAATCATT
CTTGTATCAGCTTCCTCCTGGTTTGATCGCAAACGATCGCAAATTTCCAT
GTGTTGTTTGGTTAGTTTCCAGGTTTCAGTGGAGTCATTTACATAGAGAA
TCTTGTCACCCAACAGATGCCTTTTACTTTTCCAATCGTTCAGGAAGTAT
GTGATTAGCTTATTCTTGAATTCTCCTGATGAAAGAAGTTGACCCCATTG
TTTGATCGGTGCTGACGAGACTATTTGTTTGACTGTCATCTCACCAGTTG
ATCTCCTTTGGCGTTCAACATCTTTGATTGAAGTTTCGAAGTAAACATCA
AAAACGACGTCGATTCTAGATGCCGATGGCGTAGCGCTGACGATTGACTT
CAAGAGCTTTGTGGAGAACTGGTCGAAAGTCAACCCACCAGACTTGAGCT
GCCGAACATATGCCATTCCATCAACGACAAATGCGTGATCTCCTTGTAGC
ATTTCAACTGGAGTGGTTTCCCCCTCGACCGCGTGTAATAGTCGTGACTT
GGCTGTTTTCTTCAAGGTACCATCCGGTTCTGACAATGACAGAGGTAGCT
CAATCAGGGGAAATGAGAGGAGTTGTTTTAGATCGATGACTCTAGATTGA
GCGATGATAGCAATTTTTGCAAACAACTCTTTCGTACTTTCAATAGCCAC
TAATCTTGCCTTGTGCTTTGCTGCTTTTGACATCGCAATATTGGAAAAAG
TGGGTAATTTTTGTTTCTTCATGCGATCAAAGATTGATAAAGTATGGCCT
TCTTCCAGACGCTCCTTGTTGAAGGTAATCATGAGCTCTTTACCTATCTC
TTTAACTGAAAGCATTTTGTCTGCTGTGGCTTCATCCAATGCAATTCCTC
TTGAAATCGACAGCAATGGCATCTCAGCAAATGGATGGACGAAATGTGGA
AATTACGTTTTTCTAACCATTTTCTGCGCTTTTCCTTTGAGAAAACCACA
AGCGATTTTTCGCTCAAAACTGTTTTGATATAGCTTTTATAGCTAACCTA
GATATTAGTCTATAATGAGAGCAGTCAAGCTGTAAGTTTCCGTCAGGTGA
GGCGTCCCTTTGGAGCGGCCTCGGTCAATCGCAGTGAGTTCGCACAGTGA
AGCATATAGGGTACTTGTGTCATAGTTTCAAATAGTGCCCTGCTGAGCTG
TGTGAGTGATCTAAGATCAACCACGTATCTGTGCGAACAATAACGAGAGA
TTGACCGGGAACTATCGAGCCTAGGTTAGTGAGTGACTGTTCACAAAAAC
AAAAACCTTGTTTAAGATCTCTTTTCCACATCTCTGCCATCCCTATTTGG
GTTTTGGCTTTTTTCAACCTGAATTTTCGAAATTTCCAACCTTGTTTAGC
TTGGATTTTGGCTTTTTTCCAACTGAATTTACAAAAATTCCAACCTTGTT
TAGCTTGGATTTTGGCTTTTTTCAACCTGAATTTTCGAAATTTCCAACCT
TGTTTAGCTTGGATTTTGGCTTTTTTCCAACTGAATTTACAAAAATTCCA
ACCTTGTTTAGCTTGGATTTTGGCTTTTTTCCACCTGGATTTTCGAAAAT
TCCAACCTTGTTAAATTTGGATTTTGGCTTTTTTCAACCTAGATTTTCTG
AGATTTTCGAAAATTCCAACTTTGTTAAATTTGGATTTTGGCTTTTTTCA
ACCTAGATTTTCGAAAATTCCAACCTTGTTTGGTTTGGATTTTGGCTTTT
GGCTTTTTTCCACCTGGATTTTAAAAAATTCCAACCTTGTTAAATTTGGA
TTTTGGCTTTTTTCAACCTAGATTTTTGAAAATTACAAGCCATGGAAAAT
GCAAAATTTCCAACCTTGGAGAATGTCCCACATTTCCAGGTTGGATTTTC
CATTGGATTTTATCTTTTTTCCAACTAAGAAAACTTGAAATTTCCAACCT
TGGAGAATGTCCCACATTTCCAGGTTGGATTTTCCATTGGATTTTATCTT
TTTTCCAACTAAGAAAACTTGAAATTTCCAACCTTGGAAATCGAAAATTC
TTTCCTGTGCAATGTGCTTCCTTTTTTCATTTCAGTTGCAGCGACTTCAG
AAAAATCTCCCAATGAGCAAACAGCAATGAAAAATGAAAACCAAAAAGTG
TGAGACTTCATACGTTAGAAATTTTGTGATTCGTTTCAATTGGAATGTGA
TGGATTGTTAGCGTTAAAAATTTCACGAAATTATGGATTTCTATTGGAGG
AATATGATAAATAAAATTGAAAATTGATTCGTGAAATTCTTAAGCTTATC
CTGGACATTTGATCTCATATACCGGGTGACCCACGAAAAAGTTCGGACCT
TTCTCGGCGTCTTGAGGCCGAACAAATGTCCCAAAGTGCTCGGAATTTTG
GTATTTAAAAAGTANNAACATTAATAATTATTAAAAACACCTTTTAAAGT
AGTTTTTGTTTAAAAACCAAGACTAGTTTTTATCAAAATTGGCACTTTCA
AGGAATTTTCTCAAAAACTGTATATCAAAAACGTCTAAAAATACCTAATT
TGATACCCCTTTTTTACCTGTTTTTTACACTATCCGAAAAGTGAATTTTG
AGTTTAAAAGCTCATAACTAGGGAACTTGTGCGTCAAATTTAAAAAGCAA
TGGCTCGGATTTTAAGTTAGGATATCTACTTTTTAAATAATAAAACTCCA
AGCACTTTGGGACATTTGTTCGGCCTCAAGACGCCGAGAAACGTCCGAAC
TTTTTCGTGGGTCACCCGGTATGGTGAACTCATCGAAATTTTCATTGATT
TAAAATTCAAAACGTCATTACGGAATGAACATTCATTTTTAAATGCATCA
AAAACAGAAAGGAGATGTTAAAATCTCCACTGTAAAGGACTCGCTCCCAA
CCAGAGACTCCCAGTCTCGAATTTTATAAATACATAATAGTGTTGTGTTT
TATGTTGAGTTATTGTAATGTAGTAAATTTTTTGATTTTATCTAGACCTT
CTTTAAAGATTTTTTTAAATTAGCTTGTCGAGGGAAAGTGAGAGCATATA
TGGTGAGAGTGTATTAAACAAGATATTCTTTTCGGACTAAAAGACCTATT
TTGAGAACTTCGATTTTCAAAGACCACACTCGTCCACAAATTTAGCCCTA
AAAAAAGAATGTTTTCTGATACGCCGGTAGTGTATTTGTGGCTGCCTACC
CAAAAGCTATTATTAAGATTGGTTCAATTTCTCGAACTTCAGAGTATAGC
GTTTCGGAGCAAATTTCCACATACGCCTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033479XLOC_033479Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053008-exon-scaffold_223-1575043694:72455..72582TCONS_00053008-exon-scaffold_223-1575043694:72455..72582Clytia hemisphaericaexon
TCONS_00053008-exon-scaffold_223-1575043694:66551..67747TCONS_00053008-exon-scaffold_223-1575043694:66551..67747Clytia hemisphaericaexon
TCONS_00053008-exon-scaffold_223-1510915933:72455..72582TCONS_00053008-exon-scaffold_223-1510915933:72455..72582Clytia hemisphaericaexon
TCONS_00053008-exon-scaffold_223-1510915933:66551..67747TCONS_00053008-exon-scaffold_223-1510915933:66551..67747Clytia hemisphaericaexon
TCONS_00053008-exon-scaffold_223-1491911889:72455..72582TCONS_00053008-exon-scaffold_223-1491911889:72455..72582Clytia hemisphaericaexon
TCONS_00053008-exon-scaffold_223-1491911889:66551..67747TCONS_00053008-exon-scaffold_223-1491911889:66551..67747Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_223supercontigscaffold_223:66551..72582 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.75965	5.02854	6.31021	2.87274	1.04815	2.44526	2.99778	4.19391	4.81388	4.61181	6.29768	4.39928	7.07983	7.72358	17.2506	17.3479	8.40409	8.0544	10.868	10.7026	3.63111	4.37619	3.98733	7.68656	0	0.372378	7.22914	3.35812	6.33374	5.23035
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053008 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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