TCONS_00052997 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052997
Unique NameTCONS_00052997
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length601

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052997 ID=TCONS_00052997|Name=TCONS_00052997|organism=Clytia hemisphaerica|type=transcript|length=601bp
CACAACTTCCTGGAATTCGCCACGGGAAAATGCAACAACAGTAAAGTAGA
AGAGGACATTGCAGTATATTCGTTTCCTTCGTTTCCTTGGTTTCTGTTTA
TAAATGGTGCATCcaatataaataattttttttttgttttcaatttctat
CACTCACTTGCACAAAACCTGCAAAAAGCATCCACGCCAGTGAATAAGCC
ATCAAATCgtttttaaagtcattttctactttttacTATTCTATTGTCAC
CGTTGTCACTTTTTACTATTCTATCGTCACCGTTTTTGGCTGCTGTTGCT
GTCGCTCGTTGGTCATTATTTATTATCTTGACAATCGCCAAGTCAACGTA
AGAGTATTTCTCTCTACTATAATTTACTATTATTCCACCATTCATAAAct
tctttattttgataataataCATTCAGGGGGCGTTCGCCATTTGTAGAAa
taatgtaataaaaaatttccTAACTTATTTTTGAGGCCTGATGTGATGGT
GCAGTGGATGGGTAACTTTCACACATCGGAATCTGAGGGTCTAAGGTTCA
AAACCTGCTCAAGTACCATTTCACAACGAAGCTTACTTATTTGATTTTCA
C
Run BLAST on NCBI

transcript from alignment at scaffold_222:413996..414596

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052997 ID=TCONS_00052997|Name=TCONS_00052997|organism=Clytia hemisphaerica|type=transcript|length=601bp|location=Sequence derived from alignment at scaffold_222:413996..414596 (Clytia hemisphaerica)
GTGAAAATCAAATAAGTAAGCTTCGTTGTGAAATGGTACTTGAGCAGGTT
TTGAACCTTAGACCCTCAGATTCCGATGTGTGAAAGTTACCCATCCACTG
CACCATCACATCAGGCCTCAAAAATAAGTTAggaaattttttattacatt
atTTCTACAAATGGCGAACGCCCCCTGAATGtattattatcaaaataaag
aagTTTATGAATGGTGGAATAATAGTAAATTATAGTAGAGAGAAATACTC
TTACGTTGACTTGGCGATTGTCAAGATAATAAATAATGACCAACGAGCGA
CAGCAACAGCAGCCAAAAACGGTGACGATAGAATAGTAAAAAGTGACAAC
GGTGACAATAGAATAgtaaaaagtagaaaatgactttaaaaacGATTTGA
TGGCTTATTCACTGGCGTGGATGCTTTTTGCAGGTTTTGTGCAAGTGAGT
GatagaaattgaaaacaaaaaaaaaattatttatattgGATGCACCATTT
ATAAACAGAAACCAAGGAAACGAAGGAAACGAATATACTGCAATGTCCTC
TTCTACTTTACTGTTGTTGCATTTTCCCGTGGCGAATTCCAGGAAGTTGT
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033470XLOC_033470Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052997-exon-scaffold_222-1491911889:413996..414596TCONS_00052997-exon-scaffold_222-1491911889:413996..414596Clytia hemisphaericaexon
TCONS_00052997-exon-scaffold_222-1510915933:413996..414596TCONS_00052997-exon-scaffold_222-1510915933:413996..414596Clytia hemisphaericaexon
TCONS_00052997-exon-scaffold_222-1575043694:413996..414596TCONS_00052997-exon-scaffold_222-1575043694:413996..414596Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_222supercontigscaffold_222:413996..414596 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.191772	0.120944	0.322109	0	0.244101	0	0.349073	0.463249	0.381332	0	0.481334	0.127719	0.527524	0.708584	0.102783	0	0	0	0	0	0.181213	0.709405	0	0	1.32991	1.52545	0.248199	0	0.248643	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052997 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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