TCONS_00052993 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052993
Unique NameTCONS_00052993
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length285

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052993 ID=TCONS_00052993|Name=TCONS_00052993|organism=Clytia hemisphaerica|type=transcript|length=285bp
TCCTACTTCAAAACGATCTTGATAGAATATATAAATGGACGGATGACAAC
AATATGAAGCTAAGctaaatgatataaaatttgaactCTTGCGCTATGGA
AAGAACCATGAGATCAAGACTCAAACAAGCTATACATCACCGTCTGGTGT
TGAGATTGAAAACAATGATGTTGTGAAAGACATTTCAGAAGCAAATTACT
GCAGTAATCGAAAAGGCTAAAAACTTAACATCTTGGATCCTGAGAACTTT
TTCTTCACGATCTTTAAATTGTATGATCGTACTAT
Run BLAST on NCBI

transcript from alignment at scaffold_222:287318..287602

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052993 ID=TCONS_00052993|Name=TCONS_00052993|organism=Clytia hemisphaerica|type=transcript|length=285bp|location=Sequence derived from alignment at scaffold_222:287318..287602 (Clytia hemisphaerica)
ATAGTACGATCATACAATTTAAAGATCGTGAAGAAAAAGTTCTCAGGATC
CAAGATGTTAAGTTTTTAGCCTTTTCGATTACTGCAGTAATTTGCTTCTG
AAATGTCTTTCACAACATCATTGTTTTCAATCTCAACACCAGACGGTGAT
GTATAGCTTGTTTGAGTCTTGATCTCATGGTTCTTTCCATAGCGCAAGag
ttcaaattttatatcatttagCTTAGCTTCATATTGTTGTCATCCGTCCA
TTTATATATTCTATCAAGATCGTTTTGAAGTAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033466XLOC_033466Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052993-exon-scaffold_222-1491911889:287318..287602TCONS_00052993-exon-scaffold_222-1491911889:287318..287602Clytia hemisphaericaexon
TCONS_00052993-exon-scaffold_222-1510915933:287318..287602TCONS_00052993-exon-scaffold_222-1510915933:287318..287602Clytia hemisphaericaexon
TCONS_00052993-exon-scaffold_222-1575043694:287318..287602TCONS_00052993-exon-scaffold_222-1575043694:287318..287602Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_222supercontigscaffold_222:287318..287602 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.54697	0	2.18358	0	0	4.19016	1.44537	1.15876	0.406903	0.613013	2.97478	1.02176	0.571142	1.93496	0	2.60733	3.89151	3.16839	2.83314	2.94163	1.60652	2.23393	0	0	3.41887	2.2843	2.20038	0	0.464759	2.14746
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052993 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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