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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052977 ID=TCONS_00052977|Name=TCONS_00052977|organism=Clytia hemisphaerica|type=transcript|length=2479bp GGGCAGCCACTCTCCTTCAAAGCAATCAGGTCCCCGTAAAAGTAACAGTG AATCAAACCTATTAGAGATGGGGGACAGTTTCTCACAAGGCGATACGCTA CAACCAGAGATGCAACCGGCCATGCATCACGCATCAAGCTCAGGCGCCGT CAATAATCCACAACAAACCAGTTATGATCCTTTCGGAGATTTCGGTAATT TCGGCTCCTCATCAGCTCAATCAAACTCCGCATCCAACTTATTCAGTGGC GGTGGAATGGCGTCCGCCCGCTCAAGCTCCGCCCGCTCCTCGCCGACTTT TAACAAAAACCCTACTTCAACGACGCGGCcccaacaacagcaacaacgtC CGACTGCGACGCAACAAAGCCGTCAATCGACAGCACCTAATTATAATGTC TTCGTATCGAATAAACAAGATAGTGTGTTCGGGAAAGGAACGGCTACGCC GACTGGAAGCGGAACATGGGgcTCTAAACCAATGAAAAACAATGATTTCA GTGACATCTTGAATGCGCAAGGTTTCACCTCGGCCAACAAACAATCGGCA ACCGGGCAAACACTAAAGCAAATGAAAAACGAAGCAGAAACTGTCGAAAT GGACCCAGTCAAACGGGCTGTGCGCGAGTGGTCAGACGGTAAGGAGCGGA ACATCCGAGCGCTCATTTCATCGCTACAGTCCATATTATGGGAGGAAGCT AAGCAGAAATGGAAACCCATTGGCTTACACGACATCATGCAAGGGAACAA GGTTAAAACATATTATCGTAAAGCATGCTTGGCTGTTCATCCTGACAAGC ACATGGGCACGGAAAACGAGCAACTGGCGCGTGCTATCTTCTTAGAACTT AACGAAGCTATGACTTTATTCGAAGAAAAGGGATCACAAAATATGTTTTA AGATTTATAATAGACAATACCAAAAAATTAttagtttatttatttttttt aacgaattttaatCATTTCGAATCTTTATGAATGTATATGTTGGATGGAT ATGCTTAAGTTTTAATTGCTCTCACCGATTGCGTCAGCTGAGAAAACTTA GACATAAAATGGAACGTCTTTATCGGGTTATTTGAAAACCGCTATGGGTG AATACACGTATTTCCTATTagcggattcatgtaaaaaaagtcacgaaaaa cgtcgagaaagtctctgattggctgaaatattgcatatacaggcaaattt ttcaaaatgtccagagtatgaggtaatctttgcatgcctccgccaatcaa aagtttgtttactcgacgttttttggtgacttttgcatgaatctgctaat aggaaataggtgTATTATAAAAAGTCAGAAATAACTGAGATAATCCGGCC GTGTGGGGTCCACCCTGATTTTACTTGTTATTTTAAAAACGCCTTTATTT TGAAGGGGCTAAATTTTGATTCGACTGACCCCGAATGGACCATATTGATA GAACCTAGTAAAATAAGATTTTGAGTATACAATCCAACTGATCCAAATTT TTTGCACTGGGGAGCACCTAACAAATAAACATGATATTCATTGCACTGTC AAATACTATTGGCACACATCAAATAATTGACAAATAGATAAATAGTTTTC GTTTTTGACTATCAAAAGCTTTTCGGataatttttatttgcttgtaAAAA Gcttcattgaaaaaaatatcaatgacgaagtatttttgaataaggcttga taatttaaaatttctcaatttgtaatatatatttttctcgtCTCACTACA TAATTTTTTCTGGGGTACATACATTTTTCATATGGTAATGCCTTTTCTTT TACTCTTTTTTTTCGATGACACTTTGATCTTTAAGAGATCTTGATTGACA AATCTTTAATTTTTCCTCGAATTGTGCTTAAATTTAAATTGTTGTGAATT CTATGGAATGGGTGTAATGGTGTAATGAAAATACTCCGTTAAGAGGCGAT GTATTGACGGGGAATTGACAATCCGTCTGTATTGGTTTTCGCTCTAAGGT TTCTTCCGAAGTTGAAATCGTAATTATTCAAAACTCGGATGCTTTAGAGG GACAAGAGGACTGAAGTACATAATGATAATTTTCTCTGTTAATTCctctc atcaaaattatttttttataaatgaacTGAATATCTACTTGTGGCTTAGT GAGtacttttttttacaagaagttTGTGGCATTAAAAGTCTTTCTGCGAA GTTTAGTGTAGTCTTTGTTGTAGCCTTGTTAaatgttttctaatttttac atTACACCGtgaaaaagaaacattcaaggatttgtttttaaataagagtg atatcgtttgcttactcatcaattttaattcacaagctttttcacattga attgacacggatgtggagcaagattggtcagaaagaggaaaaatatcAAT AGGCATCACTggcctgatatgaaatatgtgtctgatataaaacgggaaca cttatgtaaaaataagacCTTTAAATGCC Run BLAST on NCBI transcript from alignment at scaffold_222:460971..466934- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052977 ID=TCONS_00052977|Name=TCONS_00052977|organism=Clytia hemisphaerica|type=transcript|length=5964bp|location=Sequence derived from alignment at scaffold_222:460971..466934- (Clytia hemisphaerica) GGGCAGCCACTCTCCTTCAAAGCAATCAGGTCCCCGTAAAAGTAACAGTG
AATCAAACCTATTAGAGATGGGGGACAGTTTCTCACAAGGCGATACGCTA
CAACCAGAGATGCAACCGGCCATGCATCACGCATCAAGCTCAGGCGCCGT
CAATAATCGTAAGTCTTTCATTTCATAATACATGATATTGATTTTGTCCA
TATCTACGTTTATTTTTTGTTCATCGTTAAAATCTATCTTAAATATACTC
CCAGGAATTAATGATTAAAGAATAACCAGAAGCTTCAATGTTTTTTAACT
GTATATTCGGCCTCATAACAAGAGATCATCAAAGTGTAAAAAGCTATCAA
CGTTGTTTTTAATTTATATTTGGCTAATATAGGGTCATTTGGAGAAACTA
TTTTTAAGAATTTACCATACCGTCACTTACTTGCAAAAACAGGAATGAAA
AGTCATTTTCAGTGTTGATCCTTGACTTTGGCGTACACTTTGTAAATGGA
TTTTATTTCCCTCACATACAGCACAACAAACCAGTTATGATCCTTTCGGA
GATTTCGGTAATTTCGGCTCCTCATCAGCTCAATCAAACTCCGCATCCAA
CTTATTCAGTGGCGGTGGAATGGCGTCCGCCCGCTCAAGCTCCGCCCGCT
CCTCGCCGACTTTTAACAAAAACCCTACTTCAACGACGCGGCCCCAACAA
CAGCAACAACGTCCGACTGCGACGCAACAAAGCCGTCAATCGACAGCACC
TAATTATAATGTCTTCGTATCGAATAAACAAGATAGTGTGTTCGGGAAAG
GAACGGCTACGCCGACTGGAAGCGGAACATGGGGTAAGCACATTGATTTC
AAAGCCCCGAAGNGGGAAAGGAACGACTACGCCGACTGGAAGCGGAACAT
GGGGTAAGCACATTGATTTCAAAGCCCCGAAGGGGCTAGATCCGAAACTC
CTGGGTTGGAAACGAAGCCACTTATTTCCCATCCAGAACACGTGGTCCTT
GTGTGTTTTAACAAAATTTCTAAATACGGGGCAAACTTAAGGCTTCGCTT
TTTCTTGCTTGAGAAAGGCTGGAGATTCCTCTCTATAGCCTCTTCGGGGC
CTTCAAACTCAATAGGTAAGAATATAGAGCAAGCTTTTTGTTTCTTTCTA
AACGTGGAATAGTGTGTATACCAGTATTTAAGTATGGTATAAGACCAGTT
GCGTTGCAGATGATATGACAGGTCTACTCCTTTCCTCCTCTCTTTAGTGC
ATGCTCAAGAATTCAATACTCAATACTTTCGTCCGGAATCGTGTCCAGAA
TCGTATAAGATTTCGGATATCTTTTCAAAATGTAGCGGAAATCAGACTAC
TACATTAAACGTATCCTGAGTGGATAAAATTTCTGCTTTGATTTTTTCCG
CAAATCAAGAATATAAGATTTATTTGTTAGCTCGATTTCATTTTTTTTAT
TTTCCTGCTGGTTTTGGCCTAAACTCGGATTTCTAATTTGAGAGTCGATT
GACGCGGAATAAGTTCATTCATTGTGTGTAAACGTCGTAACTTCTAGTTT
TAATTTCTTCTTTTTTTAGGCTCTAAACCAATGAAAAACAATGATTTCAG
TGACATCTTGAATGCGCAAGGTTTCACCTCGGCCAACAAACAATCGGCAA
CCGGGCAAACACTAAAGCAAATGAAAAACGAAGCAGAAACTGTCGAAATG
GACCCAGTCAAACGGGCTGTGAGTGTTTTAATATGACACCTTTGGGTAAT
TGATTAGAGGGTGCCTATTTCTTGTTTCCCTCCTTTGTGTTTATTCGCCA
TTAACGCCATTGCACCATTGCGATTTTTTCAATTCAGGATTCTCTCTCTA
AATCCGGCTTCTTTGACTGCTGATTCAATGTCAAATTTAGAGTATCCTCT
TTGTTCCCTTCGAGTAGTGGTGCCTGAACAAGTATTATGGTTTTTCTGCA
CAGCCAAGCCCTACAGTCTGTTCCTCTAAAGAATCCTGCATTGTAAGATG
TATGCGTAATTTGTCATTCTTTTTTAAAACATATGTAGTTAATTGCTGCG
GTAAACAGAGAGGAATGAATACGTAGGGGTGGTACAGCTACTTTTTCTGG
GTTGTGGATGGCGACATTTGTCGTTCTTTATGAAATTTGTCGTTCTTTTG
TCCATTTTTTAGTAAATATAGGATTCTTTTATATAAACCCCCTCCCCTAT
CATGCAGATTTACATGGGAGTATAACAGAAACAGAACTCCTCATGCTGCC
TGTCATAAATCTATTAAAAAATTTTTATAATGCAGTCTCATAAAAAAGGC
GAGGTGCCTTAACAGCTCATGCTTGTTTAAGAGGGACCTAAATTAAATGA
AAGATCTCTCCCTTTCCCACGCTAGGTGCGCGAGTGGTCAGACGGTAAGG
AGCGGAACATCCGAGCGCTCATTTCATCGCTACAGTCCATATTATGGGAG
GAAGCTAAGCAGAAATGGAAACCCATTGGCTTACACGACATCATGCAAGG
GAACAAGGTTAGTGAAGTTTATAATATTTTATATGTCTTAGAATTGAGGT
TGAAGGTTTCAGTTTTTTATGTCAGATTGTACGCGAGGCTGGGATAAAGT
TTGTCTTTTTTAGAAATTGGAGTACTAACTAAGGAAAAATTCGAAAATTA
GTATTTGATTACATTAGTTCCTGAATGAAGCAATGTTAGGGAATGAAAAG
TGAAAAGAGTTTATTATATGGACAAAGTATATTACAAGCACATAAAACTG
ACACCTAAGCCTGAACAACCATTCATGCACGAACGAAAAACTCGCACAAT
ATAGTACAAATGCACGGACGCATCACACAATTAACCAAGCTCAAACCAAG
AAGTGAAACTCAGGAAATCAAAAAGGCAGAACCACTAGGTAGACTGAACA
ACTGTTGGAAGCATGAAGCATGAAAAGTTTTCCTTGCCATTTTTGCCAAG
TCAAAAAAAGAAATCACATGAATGAAGGAAGAGAAAAAGTGAAAAGATAA
GCGAATGCGCATTGACATTTTGACAGAAGAGCTGCAAGTGCAAGTCACAG
AGAGTACGTATTTATTTGGGACAGGCTGGAGTTTTTACAAGCTTTTATTT
GATTTGGTTGGTCGTTAAGATGTAATAAAAGAATCTTATTACTTTTTCTA
AAGAACGCGTCATCTCTATCACTTTAAATNGCAGAAATGGAAACCCATTG
GCTTACACGACATCATGCAAGGGAACAAGGTTAGTGAAGTTTATAATATT
TTATATGTCTTAGAATTGAGGTTGAAGGTTTCAGTTTTTTATGTCAGATT
GTACGCGAGGCTGGGATAAAGTTTGTCTTTTTTAGAAATTGGAGTACTAA
CTAAGGAAAAATTCGAAAATTAGTATTTGATTACATTAGTTCCTGAATGA
AGCNATTTCAAGCAATTCTTGATATTCATGATGTAATCTTTTATACGGAA
ACACACGAAAAACACCGGGCGTTTGCCACCAGTTTCATTATTTAAATGCA
AACGCCCGGTGTTTTTGCGGCTGTTTCCGTATGAATATCAAGAATACATC
AGGATTTCTACAATCAAACCGACGTTTAAAAAAATTTATTTCCTCTTCGA
GAATGATTCCCTTCAAGACTTTTCTTCTTCTATCATAGGTTAAAACATAT
TATCGTAAAGCATGCTTGGCTGTTCATCCTGACAAGGTGAGGAGAAACAT
TTGTTGTACTATTGTTTTTTTTTACTATTGGTCTTGACCCACCCTCTAGG
GCTCCCTCTAGACCTTGTCATGGACAAGAAGGTTTCATTCAAATCCCGTC
TAACGAGCGAATATTTTTCATCCTTTATTAAATGGTATCCATTCCACATA
ATTAACACTTACATCATCACAACTAGTCCTCTCTGTAAGTGTAAGTGTCT
TCAGAGGTGACTGTAACAGTCAAAAATGGACTAGGTCGGATTTGTTCGAG
TTATAAGGGTCCCTTTTTTAAACTCTTTGTAAGTCTACTCAAATAGGTAA
AAAAACATAAATTAGCGATTGTGTTTCTGACAGGGTCCCAAAATTACAAA
ATATCAAAAATCGATGCCCTCATACGGTCATAAATTTTTGCAATTTAAAA
ATGTTGGCTGAAAATTGGAAAAATAGTCCCTGAAAGGGTTTTAAAAAACT
TCCGAAAATTAATCTCTCAAAGGATCTATTTTCAGACTTAGCTCGAAGAT
ACCCGCCACCTCGCAAATTTAGTACCCCCGGGCTCTTTGTACGGTTTTCT
TGACTACATTATTTTCTTTTCTTTTCACTTTCAGCACATGGGCACGGAAA
ACGAGCAACTGGCGCGTGCTATCTTCTTAGAACTTAACGAAGCTATGACT
TTATTCGAAGAAAAGGGATCACAAAATATGTTTTAAGATTTATAATAGAC
AATACCAAAAAATTATTAGTTTATTTATTTTTTTTAACGAATTTTAATCA
TTTCGAATCTTTATGAATGTATATGTTGGATGGATATGCTTAAGTTTTAA
TTGCTCTCACCGATTGCGTCAGCTGAGAAAACTTAGACATAAAATGGAAC
GTCTTTATCGGGTTATTTGAAAACCGCTATGGGTGAATACACGTATTTCC
TATTAGCGGATTCATGTAAAAAAAGTCACGAAAAACGTCGAGAAAGTCTC
TGATTGGCTGAAATATTGCATATACAGGCAAATTTTTCAAAATGTCCAGA
GTATGAGGTAATCTTTGCATGCCTCCGCCAATCAAAAGTTTGTTTACTCG
ACGTTTTTTGGTGACTTTTGCATGAATCTGCTAATAGGAAATAGGTGTAT
TATAAAAAGTCAGAAATAACTGAGATAATCCGGCCGTGTGGGGTCCACCC
TGATTTTACTTGTTATTTTAAAAACGCCTTTATTTTGAAGGGGCTAAATT
TTGATTCGACTGACCCCGAATGGACCATATTGATAGAACCTAGTAAAATA
AGATTTTGAGTATACAATCCAACTGATCCAAATTTTTTGCACTGGGGAGC
ACCTAACAAATAAACATGATATTCATTGCACTGTCAAATACTATTGGCAC
ACATCAAATAATTGACAAATAGATAAATAGTTTTCGTTTTTGACTATCAA
AAGCTTTTCGGATAATTTTTATTTGCTTGTAAAAAGCTTCATTGAAAAAA
ATATCAATGACGAAGTATTTTTGAATAAGGCTTGATAATTTAAAATTTCT
CAATTTGTAATATATATTTTTCTCGTCTCACTACATAATTTTTTCTGGGG
TACATACATTTTTCATATGGTAATGCCTTTTCTTTTACTCTTTTTTTTCG
ATGACACTTTGATCTTTAAGAGATCTTGATTGACAAATCTTTAATTTTTC
CTCGAATTGTGCTTAAATTTAAATTGTTGTGAATTCTATGGAATGGGTGT
AATGGTGTAATGAAAATACTCCGTTAAGAGGCGATGTATTGACGGGGAAT
TGACAATCCGTCTGTATTGGTTTTCGCTCTAAGGTTTCTTCCGAAGTTGA
AATCGTAATTATTCAAAACTCGGATGCTTTAGAGGGACAAGAGGACTGAA
GTACATAATGATAATTTTCTCTGTTAATTCCTCTCATCAAAATTATTTTT
TTATAAATGAACTGAATATCTACTTGTGGCTTAGTGAGTACTTTTTTTTA
CAAGAAGTTTGTGGCATTAAAAGTCTTTCTGCGAAGTTTAGTGTAGTCTT
TGTTGTAGCCTTGTTAAATGTTTTCTAATTTTTACATTACACCGTGAAAA
AGAAACATTCAAGGATTTGTTTTTAAATAAGAGTGATATCGTTTGCTTAC
TCATCAATTTTAATTCACAAGCTTTTTCACATTGAATTGACACGGATGTG
GAGCAAGATTGGTCAGAAAGAGGAAAAATATCAATAGGCATCACTGGCCT
GATATGAAATATGTGTCTGATATAAAACGGGAACACTTATGTAAAAATAA
GACCTTTAAATGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00052977-exon-scaffold_222-1575043694:466777..466934 | TCONS_00052977-exon-scaffold_222-1575043694:466777..466934 | Clytia hemisphaerica | exon |
TCONS_00052977-exon-scaffold_222-1575043694:466102..466413 | TCONS_00052977-exon-scaffold_222-1575043694:466102..466413 | Clytia hemisphaerica | exon |
TCONS_00052977-exon-scaffold_222-1575043694:465217..465365 | TCONS_00052977-exon-scaffold_222-1575043694:465217..465365 | Clytia hemisphaerica | exon |
TCONS_00052977-exon-scaffold_222-1575043694:464428..464559 | TCONS_00052977-exon-scaffold_222-1575043694:464428..464559 | Clytia hemisphaerica | exon |
TCONS_00052977-exon-scaffold_222-1575043694:463249..463296 | TCONS_00052977-exon-scaffold_222-1575043694:463249..463296 | Clytia hemisphaerica | exon |
TCONS_00052977-exon-scaffold_222-1575043694:460971..462650 | TCONS_00052977-exon-scaffold_222-1575043694:460971..462650 | Clytia hemisphaerica | exon |
TCONS_00052977-exon-scaffold_222-1510915933:466777..466934 | TCONS_00052977-exon-scaffold_222-1510915933:466777..466934 | Clytia hemisphaerica | exon |
TCONS_00052977-exon-scaffold_222-1510915933:466102..466413 | TCONS_00052977-exon-scaffold_222-1510915933:466102..466413 | Clytia hemisphaerica | exon |
TCONS_00052977-exon-scaffold_222-1510915933:465217..465365 | TCONS_00052977-exon-scaffold_222-1510915933:465217..465365 | Clytia hemisphaerica | exon |
TCONS_00052977-exon-scaffold_222-1510915933:464428..464559 | TCONS_00052977-exon-scaffold_222-1510915933:464428..464559 | Clytia hemisphaerica | exon |
TCONS_00052977-exon-scaffold_222-1510915933:463249..463296 | TCONS_00052977-exon-scaffold_222-1510915933:463249..463296 | Clytia hemisphaerica | exon |
TCONS_00052977-exon-scaffold_222-1510915933:460971..462650 | TCONS_00052977-exon-scaffold_222-1510915933:460971..462650 | Clytia hemisphaerica | exon |
TCONS_00052977-exon-scaffold_222-1491911889:466777..466934 | TCONS_00052977-exon-scaffold_222-1491911889:466777..466934 | Clytia hemisphaerica | exon |
TCONS_00052977-exon-scaffold_222-1491911889:466102..466413 | TCONS_00052977-exon-scaffold_222-1491911889:466102..466413 | Clytia hemisphaerica | exon |
TCONS_00052977-exon-scaffold_222-1491911889:465217..465365 | TCONS_00052977-exon-scaffold_222-1491911889:465217..465365 | Clytia hemisphaerica | exon |
TCONS_00052977-exon-scaffold_222-1491911889:464428..464559 | TCONS_00052977-exon-scaffold_222-1491911889:464428..464559 | Clytia hemisphaerica | exon |
TCONS_00052977-exon-scaffold_222-1491911889:463249..463296 | TCONS_00052977-exon-scaffold_222-1491911889:463249..463296 | Clytia hemisphaerica | exon |
TCONS_00052977-exon-scaffold_222-1491911889:460971..462650 | TCONS_00052977-exon-scaffold_222-1491911889:460971..462650 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_222 | supercontig | scaffold_222:460971..466934 - |
Blast
BLAST of TCONS_00052977 vs. Swiss-Prot (Human)
Match: AUXI (Putative tyrosine-protein phosphatase auxilin OS=Homo sapiens GN=DNAJC6 PE=1 SV=3) HSP 1 Score: 133.65 bits (335), Expect = 6.042e-32 Identity = 63/138 (45.65%), Postives = 92/138 (66.67%), Query Frame = 2
Query: 485 KNNDFSDILNAQGFTSANKQSATGQTLKQMKNEAETVEMDPVKRAVREWSDGKERNIRALISSLQSILWEEAKQKWKPIGLHDIMQGNKVKTYYRKACLAVHPDKHMGTENEQLARAIFLELNEAMTLFEEKGSQNMF 898
K DF D+L+ QGF +A+K +T+ +M+ E EMDP K + EW +GKERNIRAL+S++ ++LW + KWKP+G+ D++ +VK YRKA L VHPDK G EQ A+ IF+ELN+A + FE +G + ++
Sbjct: 778 KAADFEDLLSGQGF-NAHKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWA-GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 913
The following BLAST results are available for this feature:
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