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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052948 ID=TCONS_00052948|Name=TCONS_00052948|organism=Clytia hemisphaerica|type=transcript|length=2161bp
CTTGTGTCGGAAGTAACCCCTGTCAAAATGGTGGATTATGTTTTCAACAA
GGAATATCGCAAGCTTGTATCTGCAACAATGGATTCACCGGCTCCAATTG
TGAGGTAAGGAGTTGAATCTATGAAAATAATTTAGTGGGGAGCTATAATT
ATAGcacttggaaaaattaaaaccaTCGTTTAGAGTTAACTAATTTTGGt
tcaactctttttttatttaattaggTTCAACCGACCCAACCTGCAGTTTA
AGACTTTTTTGTTATCATCACATAGATCGCACCATTAACTCCTGCCCCAC
AGACCAACCCACCGACTAATCCGCCAACTAACCCACCAACTAACCCACCA
ACCAACCCACCAACCAACTCACCAACAAACCCACCAACTAATCCACCAAC
CAACCTACCGACTAACCCACCAACTAACCCACCAACCAACCCACCGACTA
ATCCACCAACCAACCCACCAACCAACCCACCAACCAACCCACCGACTAAC
CCACCAACAAATGCACCAACTAATGCACCAACAAATCCACCAACTAATCC
ACCAACTAACCCATTGACAAACCCACCAACAAACCCACCAACAAATCCAC
CAACCAACCCACCAACTAATTCACCAACTAATCCACCAACCAACCCACCA
ACAAACTCACCAACAAATCCACCAACTAACCCACCAGCCAACCCACCAAC
AAACTCACCAACAAATCCACCGACTAACCCACCGACTAACCCACAAACCA
ATCCACCAACAAACCCACCAACAAATCCACCAACTAATCCACCAACAAAT
CCACCAACCAACCCACCAACCAACCCACCAACAAACTCACCAACAAATCC
ACCAACTAACCCACCGACTAACCCACAAACCAATCCACCAACAAACCCAC
CAACAAACCCACCAACTAATCCACCAACAAACCCACCAACCAACCCACCA
ACAAACTCACCAACAAATCCACCAACTAACCCACCGACTAACCCACAAAC
CAATCCACCAACAAACCCACCAACAAATCCACCAACTAATCCACCAACAA
ATCCACCAACAAATCCACCAACAAATCCACCAACTAATTCACCAACAAAT
CAACCAACCAACCCACCAACAAACCCACCAACTAACCCACCAACAAATCC
ACCAACTAATCCACCAACAAATCCACCAACTAATCCACCAACAAATCCAC
CAACCAACCCACCAACTAACCCACCAACTAACCCACCGACTAACCCACCA
ACCAACCCACAAACCAATCCACTAACTAACCCACCGACAACTTCATTTGA
TCCAATGACATTTTGCAATGGAAGAATTGGTTACTTTGCTCACCCAAACC
GTAACCTTTTCATTCGCTGTACTCAACTTGGAACCTTTGTACAAACATGT
GGAAATTTGGTTTGGCTTCAAATCGCAGAGGGTTACGGTACCTGCGTACG
ATCTTCAGCATCGTTCCCTTCGATTGTCACAACTACTGCCACCCCAACCA
ATCCACCGACAACAACTTCCGCCCCAACTAACCCACCTACTGCAACTACA
ACCCCAACCAACCCACCGACCACAACTGTACCTCTAACCAATCCAACGAC
AACAACTGCCGCTCCAACCAACCCACCCACTACAACTGCCGCCCCAACTA
ACACACCGACAACTACTGCCGCCCCTACCAACCCACCAACAACTACTTCC
ATCCCAACCAACCCACCAACAACTACTTCCACCCCAATAAACCCACCAAC
AACGCCCTTCAGTCCATCAGcattttgcgtcggaaaaatcGGTTACTTTG
CTCACCCAAACCGTAACCTTTTCATTCGCTGTACTCAACTTGGAACCTTT
GTACAAACATGTGGAAATTTGGTTTGGCTTCAAATCGCAGAGGGTTACGG
TACCTGCGTAAGATCTTCAGCATCGTTCCCTTCGATTGTCACAACTGTCG
CTTCAACCAACCCACCGACAACAACTGCCACTTCAACCAACCCACCGACA
ACAACTGCCGCCCCAACTAACCCACCAACTACAACTTCCGCCTCAACTAA
CCCACTAACAACTACTTCTACCCTAACAAACCCACCAACAACGCCCTTCA
GTCCATCAGCATTCTGCGTCGGAAAAATCGGTTACTTCGCTCATCCAGAT
CGTCATCTTTN Run BLAST on NCBI transcript from alignment at scaffold_222:68493..70653- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052948 ID=TCONS_00052948|Name=TCONS_00052948|organism=Clytia hemisphaerica|type=transcript|length=2161bp|location=Sequence derived from alignment at scaffold_222:68493..70653- (Clytia hemisphaerica)
CTTGTGTCGGAAGTAACCCCTGTCAAAATGGTGGATTATGTTTTCAACAA
GGAATATCGCAAGCTTGTATCTGCAACAATGGATTCACCGGCTCCAATTG
TGAGGTAAGGAGTTGAATCTATGAAAATAATTTAGTGGGGAGCTATAATT
ATAGCACTTGGAAAAATTAAAACCATCGTTTAGAGTTAACTAATTTTGGT
TCAACTCTTTTTTTATTTAATTAGGTTCAACCGACCCAACCTGCAGTTTA
AGACTTTTTTGTTATCATCACATAGATCGCACCATTAACTCCTGCCCCAC
AGACCAACCCACCGACTAATCCGCCAACTAACCCACCAACTAACCCACCA
ACCAACCCACCAACCAACTCACCAACAAACCCACCAACTAATCCACCAAC
CAACCTACCGACTAACCCACCAACTAACCCACCAACCAACCCACCGACTA
ATCCACCAACCAACCCACCAACCAACCCACCAACCAACCCACCGACTAAC
CCACCAACAAATGCACCAACTAATGCACCAACAAATCCACCAACTAATCC
ACCAACTAACCCATTGACAAACCCACCAACAAACCCACCAACAAATCCAC
CAACCAACCCACCAACTAATTCACCAACTAATCCACCAACCAACCCACCA
ACAAACTCACCAACAAATCCACCAACTAACCCACCAGCCAACCCACCAAC
AAACTCACCAACAAATCCACCGACTAACCCACCGACTAACCCACAAACCA
ATCCACCAACAAACCCACCAACAAATCCACCAACTAATCCACCAACAAAT
CCACCAACCAACCCACCAACCAACCCACCAACAAACTCACCAACAAATCC
ACCAACTAACCCACCGACTAACCCACAAACCAATCCACCAACAAACCCAC
CAACAAACCCACCAACTAATCCACCAACAAACCCACCAACCAACCCACCA
ACAAACTCACCAACAAATCCACCAACTAACCCACCGACTAACCCACAAAC
CAATCCACCAACAAACCCACCAACAAATCCACCAACTAATCCACCAACAA
ATCCACCAACAAATCCACCAACAAATCCACCAACTAATTCACCAACAAAT
CAACCAACCAACCCACCAACAAACCCACCAACTAACCCACCAACAAATCC
ACCAACTAATCCACCAACAAATCCACCAACTAATCCACCAACAAATCCAC
CAACCAACCCACCAACTAACCCACCAACTAACCCACCGACTAACCCACCA
ACCAACCCACAAACCAATCCACTAACTAACCCACCGACAACTTCATTTGA
TCCAATGACATTTTGCAATGGAAGAATTGGTTACTTTGCTCACCCAAACC
GTAACCTTTTCATTCGCTGTACTCAACTTGGAACCTTTGTACAAACATGT
GGAAATTTGGTTTGGCTTCAAATCGCAGAGGGTTACGGTACCTGCGTACG
ATCTTCAGCATCGTTCCCTTCGATTGTCACAACTACTGCCACCCCAACCA
ATCCACCGACAACAACTTCCGCCCCAACTAACCCACCTACTGCAACTACA
ACCCCAACCAACCCACCGACCACAACTGTACCTCTAACCAATCCAACGAC
AACAACTGCCGCTCCAACCAACCCACCCACTACAACTGCCGCCCCAACTA
ACACACCGACAACTACTGCCGCCCCTACCAACCCACCAACAACTACTTCC
ATCCCAACCAACCCACCAACAACTACTTCCACCCCAATAAACCCACCAAC
AACGCCCTTCAGTCCATCAGCATTTTGCGTCGGAAAAATCGGTTACTTTG
CTCACCCAAACCGTAACCTTTTCATTCGCTGTACTCAACTTGGAACCTTT
GTACAAACATGTGGAAATTTGGTTTGGCTTCAAATCGCAGAGGGTTACGG
TACCTGCGTAAGATCTTCAGCATCGTTCCCTTCGATTGTCACAACTGTCG
CTTCAACCAACCCACCGACAACAACTGCCACTTCAACCAACCCACCGACA
ACAACTGCCGCCCCAACTAACCCACCAACTACAACTTCCGCCTCAACTAA
CCCACTAACAACTACTTCTACCCTAACAAACCCACCAACAACGCCCTTCA
GTCCATCAGCATTCTGCGTCGGAAAAATCGGTTACTTCGCTCATCCAGAT
CGTCATCTTTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052948-exon-scaffold_222-1575043694:68493..70653 | TCONS_00052948-exon-scaffold_222-1575043694:68493..70653 | Clytia hemisphaerica | exon |
| TCONS_00052948-exon-scaffold_222-1510915933:68493..70653 | TCONS_00052948-exon-scaffold_222-1510915933:68493..70653 | Clytia hemisphaerica | exon |
| TCONS_00052948-exon-scaffold_222-1491911889:68493..70653 | TCONS_00052948-exon-scaffold_222-1491911889:68493..70653 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_222 | supercontig | scaffold_222:68493..70653 - |
Blast
The following BLAST results are available for this feature:
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