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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052944 ID=TCONS_00052944|Name=TCONS_00052944|organism=Clytia hemisphaerica|type=transcript|length=561bp
AGAAAACCCATGTTTAAACGGAGGAGATTGTTCTCTTTCAAATACTCTCT
ACGCTGGTTATTCTTGTCAATGTAATGGAGGATTCTCAGGACCAATGTGT
AAAATCAGTGCTTGCTCAAAAAACCCATGTCAAAACGGTGGTAGTTGTAC
GGCAAAACCATCCAGTCCTGGATTCGAATGTGCTTGTGTTGCTCCCTATA
CTGGTGCCATCTGTCAGGAATCGATCTGTTCTTTACAACAACCTTGCAAA
AACGGAGGATCATGCGCAGTAGCGCCAGGAACACCTGGTTACCAATGCAC
ATGTGCAAACAATGGATACACTGGACCCACTTGTGAAGCTTCGGCCTGCG
ACGTCAACCCCTGTGCTAATGGAGCCCAATGTAACCCATCTGCTGCATCC
CCAGGATATACTTGCACATGTCCAGTTGGATTTTCAGGACCAACTTGTAG
TGCTTCAGCATGTGATGCCAACCCATGTAAAAACGGCGCAACATGTACCC
CAGATGGCACCGCCCTTGGTTATTCTTGCGCATGCGTAGGAGGATATTCT
GGATCAACTTG Run BLAST on NCBI transcript from alignment at scaffold_222:51702..74007- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052944 ID=TCONS_00052944|Name=TCONS_00052944|organism=Clytia hemisphaerica|type=transcript|length=22306bp|location=Sequence derived from alignment at scaffold_222:51702..74007- (Clytia hemisphaerica)
AGAAAACCCATGTTTAAACGGAGGAGATTGTTCTCTTTCAAATACTCTCT
ACGCTGGTTATTCTTGTCAATGTAATGGAGGATTCTCAGGACCAATGTGT
AAAGTAAGATTTTTTACAAACATCTATTAACTAAGTTTGAATAAACAAGG
CGAATACTTTTTACACCGCAGTTTTCTTTCCATTGCAAAGAAGGATTCTT
AGGATCAATTTGTTCAAAAAAATTTTCAAAATAAACCTCTGTATTGCAAG
TTTGGATGAACAAGCTAAACAAACTTAACACTGATTATTTTTTTTATAAT
AAAGCATATTGTCCTGATTGGTTGTATCACGAATTTAAAGCCATCATATA
GAGATATTCTTTCTATTATAGATCAGTGCTTGCTCAAAAAACCCATGTCA
AAACGGTGGTAGTTGTACGGCAAAACCATCCAGTCCTGGATTCGAATGTG
CTTGTGTTGCTCCCTATACTGGTGCCATCTGTCAGGTTAGTTCATGTTTA
AGTATCATATTATCAATGCCACAGTGTGGACCTCAAAGATTGAACTTAAC
ATTTGGTTATTAGTTATGTGATGGTAAAGAGAGACCCTCGAATCAAATTT
GTTGGTAATAAACCAAAACCTATTCATTATGTTCAATATGTAATGCTTAC
TACCGCGAAACTGGCTAAAACCGGGGTGTTTCCGTTAAAAATATTACGTA
ATGAATATATCATGAATGAAAAACTTCAATTTTCCCAGGAATCAATTTGT
TCTTTACAACAACCTTGCAAAAACGGAGGATCATGCGCAGTAGCATCAGG
AACACCTGGTTACCAATGCACATGCGCAAACAATGGATACACTGGACCCA
CTTGTGAAGCTTCGGCCTGCGACGTAAACCCATGTGCTAATGGAGCCCAA
TGTAACCCATCTGCTGCATACCCAGGATATACTTGTACATGTCCAGTCGG
ATTTTCAGGACCAACTTGTAGTGTAAGTATCATTAGAGTTATAAGAGAAT
TCTGCCAACTAAACAATGCTTGGAATTGTAAACTTTCAAACATATTATAT
ATTAGTACACGTTTTTTTTAAAGAAACACACTTTTAAAAATCATGAGGCA
AAGAATACCTAAAAATTAAAGAACATCTAAGAAACATGCTGAGACTGAGA
ACGAGAAGAATTTTTTAATTCGTTTTTTTTAAGAACCTTCCAATCAAAAC
AAATGCTTTTTTTTGCATGAAAAAAAGGCTGAATATGTCAAAAAGTTTAG
AAACATGTAAGAAATATTTAAGGCTGAAAAGACCGATTTCTTAAGAAACA
TTGAGGCTGCTTGGTAAAACTAGTTTCTTAAAAAAAAATGTGTACCATGA
AAAATCGCAAAACCTTTCAACTAATTCTATTCTTTCTCACAACTTTTTAG
GCTTCAGCATGTGATGCCAACCCATGTAAAAACGGCGCAACATGTACCCC
AGATGGCACCGCCCTTGGTTATTCTTGCGCATGCGTAGGAGGATATTCTG
GATCAACTTGTACTGTAAGTAATTTCACTTGCCTCGCTCAGTCAGTTCTT
ATTGATAGTGTTTTGAACGGGTATCTAGAACTAACTGATATTATATTGTT
ACAGTGGATCTCTATAACTCGAACTCGCACGGAATTACAAATCTCTCCGT
ATTAAGCAAACTCCGAGATATAGAGTAAGTTTTATAAGGCATTGTTAACT
GAAGGGACCATAACAATTGTTCGAGTTAAGGAAATTTCGAGTAATGGTGT
AAGGTTTATAAAGCATTGTTCACTGAAGAGACAATAGCATAAAACTTGCT
ATAAGGAGGCATTCCAGTTATAGAGGTTCAAATTAAAAACACTGCATAAA
GAATTCGCACATGTTCACTAAAAGCAAATTTAATCTTCAAATGATTGTAC
TATCATGATACAAAGAGATAAGATATATTCCCACGATAAGTCAATTCAAA
CTTACAGCATTCTTACTGAAAACTATTCCACTTTCTTTCCAGGCTTCTGC
TTGCGATGCTTTGCCATGTTTTAATGGAGGAACTTGTATTGTTGATTCAA
GTAATGATGGATTCACGTGTAATTGCCAACCTGGATATTCTGGTGCCACG
TGCAGTGTAAGTTGCCTCGATTACTCAATCATCAAAAACAGTGTTTTAGT
TAAAACTTTGAGATCGTTCCATTATGGTAATGTTGAAACATAGGTTAGAG
ACCCTAGCTGCACATTATTGATTGATAACCTTATCTGAAATCGCCTATTT
TCTGTCAACTCAAAAATAGTATTTTAAGTTCACTTCACTTCTGACTCGAT
AAATGAACCAAAAAATACAATGTCTTGAACTGAAAATTTTTTTTCTTTCC
ACAGCAATCAGCTTGTGGACCAAACCCATGTCAAAATGGCGGAAGTTGTC
AACCTGATAACTCTGCTGACGGTTATACTTGCACATGTGAAGAAGGATAT
TTCGGTGTCAATTGTATGGTAAGTGTCAAAACACCAATTAATTTTCTGCA
AAGGTTTTGTCATTGAAATTGACCATATCATAAAATGCAATCTATTGGAT
TTACTCTCCAAAAACATCGTTCCAGGGGTAATTTATTCTTCCGTTTGTAT
CTAAACTAATCCGTTTTAATGGAAATCCTATTAACTTAACTTAGAATTTA
ACTTTTCGTGTTCTTTATATCCAGGCCTCAAATTGTGATATGCAACCATG
TCAAAATGGTGGAAGTTGCGAACCTGACGGTTCGGCTGATGGTTTTACTT
GCACTTGCGAAGTCGGATATTTTGGTGTTCATTGCACAGTAAGTAATTTT
ATTTTCCCAATCTGACACAAGTAACTTTTGTAACGTTTTGNTGTTAGTAA
TTTTATTTTCCCAATCTGACGCACAAGTAGTTTTTTTAACATTTTGTCCG
TAAACTCGGACGATTTTTACGAAACTTTCTTTTTTCATATCTGTTGAGTT
TCTAACGTGGACAATTGTTATTATGCTTTCGTGAACAATTTGAATGCAAG
ATTTATCAACAAATTTATATATTGCTAAAAGTTTTTCATTTCTTTTCCTT
TCTTTCCTAGGCATCAGCCTGTACCAGTCACCCATGTAAATATGGAGGAA
GTTGTCAACCAGATGGATCGGATGATGGATACACTTGTTCATGTCTTACT
GGATTCTTTGGAAACCAATGTGAAGTGAGTTGAATCTTTTATCTCAAAGC
TTTCTTTCTCAAACATTCTTATCCTATTTGATAGTATGACCAATGTCAAG
TGAGTTACTTTGAAAATACTTACAACTGTGATATGAACGTATATTGCCAA
AACTGTGAAGAAATCCCTTTCTAATGTCTACACCTTTTCTATCTTAGTTG
AGATCTTGTGTCGGAAGTAACCCCTGTCAAAATGGTGGATTATGTTTTCA
ACAAGGAATATCGCAAGCTTGTATCTGCAACAATGGATTCACCGGCTCCA
ATTGTGAGGTAAGGAGTTGAATCTATGAAAATAATTTAGTGGGGAGCTAT
AATTATAGCACTTGGAAAAATTAAAACCATCGTTTAGAGTTAACTAATTT
TGGTTCAACTCTTTTTTTATTTAATTAGGTTCAACCGACCCAACCTGCAG
TTTAAGACTTTTTTGTTATCATCACATAGATCGCACCATTAACTCCTGCC
CCACAGACCAACCCACCGACTAATCCGCCAACTAACCCACCAACTAACCC
ACCAACCAACCCACCAACCAACTCACCAACAAACCCACCAACTAATCCAC
CAACCAACCTACCGACTAACCCACCAACTAACCCACCAACCAACCCACCG
ACTAATCCACCAACCAACCCACCAACCAACCCACCAACCAACCCACCGAC
TAACCCACCAACAAATGCACCAACTAATGCACCAACAAATCCACCAACTA
ATCCACCAACTAACCCATTGACAAACCCACCAACAAACCCACCAACAAAT
CCACCAACCAACCCACCAACTAATTCACCAACTAATCCACCAACCAACCC
ACCAACAAACTCACCAACAAATCCACCAACTAACCCACCAGCCAACCCAC
CAACAAACTCACCAACAAATCCACCGACTAACCCACCGACTAACCCACAA
ACCAATCCACCAACAAACCCACCAACAAATCCACCAACTAATCCACCAAC
AAATCCACCAACCAACCCACCAACCAACCCACCAACAAACTCACCAACAA
ATCCACCAACTAACCCACCGACTAACCCACAAACCAATCCACCAACAAAC
CCACCAACAAACCCACCAACTAATCCACCAACAAACCCACCAACCAACCC
ACCAACAAACTCACCAACAAATCCACCAACTAACCCACCGACTAACCCAC
AAACCAATCCACCAACAAACCCACCAACAAATCCACCAACTAATCCACCA
ACAAATCCACCAACAAATCCACCAACAAATCCACCAACTAATTCACCAAC
AAATCAACCAACCAACCCACCAACAAACCCACCAACTAACCCACCAACAA
ATCCACCAACTAATCCACCAACAAATCCACCAACTAATCCACCAACAAAT
CCACCAACCAACCCACCAACTAACCCACCAACTAACCCACCGACTAACCC
ACCAACCAACCCACAAACCAATCCACTAACTAACCCACCGACAACTTCAT
TTGATCCAATGACATTTTGCAATGGAAGAATTGGTTACTTTGCTCACCCA
AACCGTAACCTTTTCATTCGCTGTACTCAACTTGGAACCTTTGTACAAAC
ATGTGGAAATTTGGTTTGGCTTCAAATCGCAGAGGGTTACGGTACCTGCG
TACGATCTTCAGCATCGTTCCCTTCGATTGTCACAACTACTGCCACCCCA
ACCAATCCACCGACAACAACTTCCGCCCCAACTAACCCACCTACTGCAAC
TACAACCCCAACCAACCCACCGACCACAACTGTACCTCTAACCAATCCAA
CGACAACAACTGCCGCTCCAACCAACCCACCCACTACAACTGCCGCCCCA
ACTAACACACCGACAACTACTGCCGCCCCTACCAACCCACCAACAACTAC
TTCCATCCCAACCAACCCACCAACAACTACTTCCACCCCAATAAACCCAC
CAACAACGCCCTTCAGTCCATCAGCATTTTGCGTCGGAAAAATCGGTTAC
TTTGCTCACCCAAACCGTAACCTTTTCATTCGCTGTACTCAACTTGGAAC
CTTTGTACAAACATGTGGAAATTTGGTTTGGCTTCAAATCGCAGAGGGTT
ACGGTACCTGCGTAAGATCTTCAGCATCGTTCCCTTCGATTGTCACAACT
GTCGCTTCAACCAACCCACCGACAACAACTGCCACTTCAACCAACCCACC
GACAACAACTGCCGCCCCAACTAACCCACCAACTACAACTTCCGCCTCAA
CTAACCCACTAACAACTACTTCTACCCTAACAAACCCACCAACAACGCCC
TTCAGTCCATCAGCATTCTGCGTCGGAAAAATCGGTTACTTCGCTCATCC
AGATCGTCATCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCC
CATTCAAAATAACCCTCAAACCGAACAAAATTACCCCCAAACAGAGCAAA
TTTACCTCCCGGACAAGGAAAATTTTGTAGATTTTTCATTACCACCTGGA
TACTATATCCTCCACCCCCATGTACGGACATTTTCTGGAAAAGCCCCTTA
AACCGTCAGCAATATAAGAATCAAACCAATACCTCAACTACACCCACGCT
TTCTGTAGCGACTTTTGAAGCATCAACATAACGAAATAGCCGACCCATCA
CAACCTAAACGAAACGATATTTGCTCTCGTAACAAACACAAGAACTTAAT
GGGCTGTTTCAAAAAAATTCCATACAAAAGGACGAACCTTTTCAAGTCAA
AACAAATTTCTTGGAAATGTGTTGACATCCTCTGGAAAATAGCAAAATTT
GCAAAAAAAGACACTGAAATTTATTTTCATGTCGTAAAATGATAGACATG
TAATGTTTGACAGCCTTCTTCAAATTGACATATGCTTGCTACCATTAAAC
GCAAGAATACTTTCTAAAATACTTCTCTTTGGTGATTCGAATTTTAGTAA
CAGCCTAAATCATAATATATTAAGTATAACCGTAAACTTTATCCAAGATA
CCAGTCCATTAGGGTCCGTTGTTTTGATTGTTCACAATGCTCATTTGATT
TGTTTTTTGTTTAATTTTGCCTTACCTTTCTATTGTTTTTTCCTTTCTCG
TTTTTCATTTTATAAGGTTCCTCTCTCCTGGCGGTATAATCTAGCAGTCG
TTTACCCCCTGGAAGTTTAAGAATAGATTTTTACCCCCTGGAAAAATCAT
GTGTAGCTTTCAGTGGCATCTACCCACAGAAATCTTGTATAAAGCACTAC
AGATAGAGCTACTCTGTCTTTCTCAAGCAACAGTAGTTGAAGCAAAATAT
CTTTACTGAGTAGACTACAGTACTCGGCGCCGGCAAATTGTTATCAAAAC
AACTGACATGGTCGGAACTGAGGAGTCATGATTCATCAAATTACCGGGAC
CAAATAGTTGTCTGATTATGAAAGATTGTTTTACTACAGCCAGTGATAAA
GTAGCTCTATCTAGTGTTTTATATCTAGGTAGTGTTTTATATAGATATCT
GTAGGTATCTGTGAATTTATTGAGGATTTGGCCTCGGGTAGGCTTATTGA
ACCTCTTTTGCGAGGAGAATGGGTTAGCGAGTTTAGATCTGAAATTGTAT
AATCTAACAGCTCGTGACAGAATATATCAACTTTAGAATTGCAATGCTTC
ACCAAAAGGGAAATATAATATAATCTCACAGTCCCGGTAGGAAGTTTTTA
ACCATGTTGAGGTTAAAAACAACGGACTGAAACTCGGCTGGGGAATTTGA
ATTCCATTTGCTTTAAGTCAAAAAAATTCAGTGGGGATTAAAAAATAGCA
TAATATTTTTCAGTGAGGATTTGTTAACATTTGAGCATTTTCAGCGGGGA
CAAAAATTGGAGCACAATTTTCCATTTGGGAGGTCAATTTTATATGTGAG
AATTCAGGGTAAAAATGATTTTTCGTTTATTTCTGAGCCATTTTGCTTGT
AAAGAATGGCTGATCACTAGTGCACGAAAAAAAATTATCCACTACTTGGG
TAGGAGCTTGAGCTCAATCTCTAGCTGAAACATACTTTAAAAAACTTCAA
AAATTGAACTTTCGAAAAAATAGTAACTAAACGAATGAATGAATGTGCTT
TTGTGTTGCAGGCGACTATTCGGTTTGGTAGATTTTATCAGTGTAGCTGA
ACGAGAGAGACATATAAAATTATTATGTTTTATCAGATACTCGCTACCAG
CTGATCACACCCAACTGTTGGTCACAAACTTACTTCTTTTTGCGTTCCAG
AGCCATTCTTAGACTCATAGCACTCGGTTATCCAAAATTGTTATCTTTTG
AAACATTCCTGAAATACAAATCAAATGAGAGGCTATTATAAGGATAAAAT
CTTGCTGCGATTTGCAAAAAAGTTTTATCTCTGATACATTGATAATGTCC
GAATTCTGACGATGGGATTAGGCACAATCAAGAAAAATATCCCTAAGGCG
GAGTGCATAGTAAGGTAAATGAGAGCATAAAAAAGAAATAAACACACTCC
AGTGTGGTGCTTCAAAATCAGATTAGCTCTATCAAGATAATGATTACCTA
AATTAAAGCCATCATAGAAAAACTTATACCATGAAACAAGCTAAACATTA
AAGTATAATTAGAGAAACTCTACCAAAAATTACAGCTTAAGTGTGGTTTC
AATTTTTTTAAGAACAAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNCCATGTATCATTAAAGTAATTATACAAACAAAGA
CAGCAAAGTGAAACAAGATTTCGCATAATGATATCACTGAAACAATTATA
ATTTTTTAGGCTCCTTCAAGGTTTTTAAACTATCGAACTTATAATGAACA
AAGAGATTTAGCCTCAAGGAGGGCTAAAATAACTACTACAATATCACTAA
GTCAGAAATAACCTAAAATCAGATTGTGATTGTTTTCTGCACACCACGCT
GAAGCTCTAAAGGGCTGTGTTAAGACAAAAGATCTGACGAATTAGCTATC
TCGCTTACGTAACAATAAAAAGACTGGGAATGAGAACAAAATGTTTCGAT
TGTGTTTGAATAGGGTGCCGTATTAAGTGAAATTCAATTTCTCTCATCTC
GACAAATAAGAGGATTCTTGTTATAAAATTGACCATTTTCCTCAAATCGT
CAATTTTCAAGCACTTTCAGATGTTTATTGATTATAGCACTTTCAGATGT
TTATTGATTATGATTGGTTTATTGAAATTGTGACCATCTATCATTGGTCT
TTACAGGGTTTTTTAACAACCAACTTGAATGGTCAAAATTAACTTTAAAT
TTTCAACAGTAGATAACATTAACTTGAGATCTTTGAAAAGAACTCATTGA
TATTAACACATCGAGAAAGCGAGGATACTTCGAATAAAGGCGTTTATAAA
CTTTTTTGGATTTTAAGAGGGACGTTTATTCGAGGGGTTGTCAATGAAAT
ATTTTTTAACCAAGGTCACTTTAATAAAGTGAATCGGATCCTTATGCTTT
CTCTTTTCCTTTTCTTTCAGTTCAAATATTTCATTTTTAGAAATGTAAAA
ATGGGTCAAAATTATTTTGAATACTGAAAGAATACAATTATTACCCCATA
ATAATTTTTTTAATAAATTTTCATCGGATGATTCCCTCTTACAGCTACTA
GTTTCAAATAAACACCTCTCCTAGTGGGAAAGCGTTTTTTTTAATTTTTC
CTCTAAGCAGGGGCGTTTATTCGAGAGAGCGTTTAAAGGAAGGGGGCCAT
GAACCATATATTTTCAAAATATTTCCAGGATTGGAAATCTCTTATTTCAC
CCATTTCAGTGCCATCTGCCTGAGACAGTGTGCGAATTTTCAGTTCGGCG
ACGTTGGTATTTTACAGACCGGTCTTTATTTTATTCAAAATACTCAGCTC
CAGCATAACCATAAATTTTGCTGCAATCTTAATGCTGATAATTTTGTAAA
GTATTTTATTGTTAAAATTTCAAATCAATGATAATTTCCAATATTATACA
GAAATATGAGAACCTAGGGCTGACTTAGCAAGTGGGGGAGAAAGTTTAGA
CATAAATAATAAGCAGGGACCACAAAAGATAAAAAAAAAGACCTTGGGCT
TTTCCGGAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAAAATAGC
ATAATATTTTGCAGTGAGGATTTGTTAACATTTGAGCATTTTCAGCGGGG
ACAAAAATTGGAGCACAATTTTCCATTTGGGAGGTCAATTTTATATGTGA
TAATTCAGGGTAAAAATTATTTTTTGTTTATTTCTGAGCCATTTTGCTTG
TAAAGAATGGCTAATTACTAGTGCACGAAAAAAAATTATCCACTACTTGG
GTAGGAGCTTGAGCTCAATCTCTAGCTGAAACATACTTTAAAAAACTTCA
AAAATTGAACCTTCGAAAAAATAGTAACTAAACGAATGAATGTGCTTTTG
TGTTGCAGACGACTATTCGGTTTGGTAGATTTTATCAGTGAGACATCTTT
GAACAAGAGAGACATATAAAATTATTATGCTTTATCAGATACTCGCTACC
AGCTGATCACACACAACTGTTGGTCACAAACTTACTTCTTTTTGCGTTCC
AGAGCCATTCTTAGACTAATAGCACTCGGTTATCCAAAATTGTTATCTTT
TGAAACATTCCTGAAATACAAATCAAATGAGAGGCTATTATAAGGATAAA
ATCTGGCTGCGATTTGCAAAAAAGTTTTATCTCTGATACATTGGTAATGT
CCGAATTCTGACGATGGGATTAGGCACAATCAAAAAAAATATTCCTACGG
CGGAGTGCATAGTAAGGTAAATGAGAGCATAAAAAAGAAATAAACACACT
CCAGTGTGGTGCTTCAAAATCAGATTAGCTCTATCAAGATAAAGATTACC
TAAATCAAAGCCATCATAGAAAAACTTATAACATGAAACAAGCTAAACAT
TAAAGTATAATTAGAGAAACTCTACCAAAAATTACAGCTTAAGTGTGGTT
TCAATTTTTTTAAGAACAAAGTCAGAAATCAGAAATCATTTAATTGGTAG
AAAATCTTAAAAAATCTTTTCATTTTTCAGAGTTTAGCAGAAAATTGTTC
GCCAACCAACCCTTGTTCAAACGGAGGAACTTGTATTGATGCTTATCCAA
CTGGTTTCGAATGTTCCTGTCCTACTGGCTTCTCTGGTAACCTGTGTGGA
GTAAGTCGATATAATTTCTATTTCTAATAATCAAGNTAGTCTTCAAATTC
ATGCAATGACAAATACTTGATTTTCCAATTTCTTGAGACTGAAAGTTAAA
GAAGTTAAGGAAAATCTATCTATGTAGCAAATCTAAAATATTCTTATGGA
AAAACCATGAAATTTGTATAAATACAGGAAGATGTTGTCCCAAAAATCAT
TCATCAGCTACAAACAGTTTGAGTCGCTTACAAGACCTTTTACTAAAGGT
GCAGCTAAGTGAAGTCACTGTAAAAAGCAAAGAAGATTTTTTGGGCCAGC
AAATTTGCAGATATCTTGAACCAAAACATCGAACTGTAAAGGTTTTCAAT
CAACAAGAAGAATCATGAAGAGCTTTTTCATTTTGTTGAACCTTGTTGCT
TCTATCCAAATGGTAAGCTACAATAATTTTTACCTTAAATATTTCGTAAA
ATCTAAATTAGATTCTTTTTTAACTTTTAAGTTATAATGTATCAAATGAA
CATCCCTCCTAGATGTGAGGCGCTTATTTGAAAGTTGCGTTTATACGAAG
GGTGGGGAGGGAGCTTTCATTTGAAGGAAAATATTTAATTAGTGATACCC
TTTCTCAGTTTCTTGAAAAATCACCTAACACGACTTTCTTTTCATTTTTC
AGAGTTTAGCAGAAAATTGTTCGCCAACCAACCCTTGTTCAAACGGAGGA
ACTTGTATTGATGCTTATCCAACTGGTTTCGAATGTTCCTGTCCTACTGG
CTTCTCTGGTAACCTGTGTGGAGTAAGTCGATATAATTTCTATTTCTAAT
AATCAAGCCGAATAACAACACTCTAATGTTTGTTCGCACGCGATTGACTA
TTACCGAGTTTACGCATGTGTATTTTTCTCCAAGGGAGACGGTAAGGCTC
TAGACTAGATCCTGACCAGCTGAGGACGACCATAAATCAGCACTTTTAAT
GCCCTCGATTTTGCAGGTCAGAAGTGCGGGTTATTTCAAATTGCTTCAGT
CACCCTACCGTCCTCAAAAGAGCAAATACATAACCTCGCTATTGATTAAC
CATAATGATCGTTACAAGGCACCGTTTCTACAAACCGTTTTCTATAAACT
CGGGCACTGACAAGCTTATGAAAGGCCACAACACTGGGTTAAAAAAAATC
GTGTAAAACTTTTTTGCTTGTCCAAATTTCACAATTCCTTCATATTTCTC
TCGTTGTGTTTCAGATGGTGAACGTATGCGACACATACGGATTACTCTGT
CAAAACGGAGGTACATGTATAGCTGATGGAACTGTCGATGGTTTCTCTTG
CACATGTGCAGCTGGATATTCTGGTGCTTACTGTACTGTAAGTTTAATTT
TAATTTCCTATAATAAAAATGCGAATATTTTGATATATGTGATTCAACAG
TAAGCGTTAAAAACACCATATCAAAAATTGGTTCCACTATTATTTGCCAT
ACCTACGAACTTCCCCTCAGAACCTCTTGTAAATGGTTTTGTTTTAAGGT
CAAAAGTTTCAATGTGAGTGAAAATTATGAATTATCTTTTTCTCTCTCTC
AGCAATCAGCATGTGGTGCTAACAGTTGTCAAAATGGAGGAACTTGTATT
CCTGGTGCCAATGGTGATTATACCTGTCAATGTCCCCCTGGAACTTCTGG
TGCTCTTTGTCAGGTAGGTTGTCTGGAAAGATTCGAGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCAATAATTCTTTCAAAAAT
GGTTATTTTGCAAAATGCAAAGCTTTTCTTTTTTAATTTGTCATGATTGT
CACAATTGAGTGCATTTTCAAGCAATCTAGAGCTCAAATTTTCAAAATTT
TCCTCCTCGGGCCAAACCATGGTTGGCCCGAGCGGTGTCACTAAACTTCA
GCCCCCTCAATATGAAAATGCTTCCTACGGCACTGTACTATTCTTACTTT
CACATAGTTTCAGAAATTTTTCCTTTATCAGATAGACTCAAAATTATCTT
GGATATTATCTGACGATGTTACGTACTTCTTATCTTCTAGAACTCAGTTT
GCGGAGCAAATCCATGCCAGAATGGAGGATCTTGTACACCGACAGCCGAT
GGCCCACAATGCACCTGTAGCACTGAATGGTCTGGTCTAACTTGTGAGGT
ATGTTATTTTCAGCTCTCTTCAAAAAATTATAACGTTTGATAATACAACT
TTATAAAATGATTAAGTACTAAAAAATTCAATCAGTGGTCCAATAAAGGT
TCTCTACCTTTTAATTGAATTACCTTAAGGGTATTAATTTTCGCGGGGAT
TATATTTCGCGAATTTCGCGAGTTTTTCCGAAATTCGCGAAATATAATCC
CCGCGAAAATTTTAAAAACCTGTGGATTCGCGAAATTCGCAACGTATAAT
CCTCGCGAAAAATTTAAAATCATGATTTTTGCCTGAACCCCTAGGAAAAT
GAAAGAAATTCGGTTAAAAAGGGGCTGATTCGCGAAATTTTATCNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATTC
CCGTCTTCGCGAAAATAAGTCCCGCGAAAATTAAATTATTTCGCGAAAAA
ATTGTCTCGCGAAAATAAGTTACCGCGAAAATTAGTACCCTTAAGGTAAT
AGACATTTAAGACAAGCTGATGCAAAACAGATGCAAACAATAGCTGGTAG
TTATTACAAAAGACCTTAATAAAACATTTTGAAAAAATCATTTCAGATTA
ACTTGGCTTGCAACATAAATCCGTGTCAAAGCGGAGGAACTTGTTCACCT
TCGAGTCTGGTTGAAGATGGTTATACTTGCACATGTGCTGATGGATTTTC
TGGTCAAACTTGTACTGTGAGTGGTTTCGATTTTCGAATGATTTTTTCTT
AAAAACAATCTTTTTGACCACTTACAAAAACAAATTCTACCAATTTTGCT
TCTCTAGAACTTGGAACTGTCTAAAAGAATCTTTGCTGAAATTCATTCAC
CAAATGGATATAGGGGTATCAATGTACCTCAAGAAATATTATATGCACCA
CAATTGACTGTGTTCAAGTTCCAAGCATTTCAGGCAGGGTGTTAGGCGAA
AGACTCTGGTCATAACTTCATTCTCGCTAATGTTAGAATTGTTATGACTG
TATTATCGATTCTTTTCTTTCAAGGAATCAAGCTGTAGCGGGAACCCTTG
TGCCACAGGAAGTACATGTGTCCCTGATGCTTCAGCCAATGGCTTTTCTT
GCACATGTGCTGCTGGCCAATCAAATCCTCTCTGTAACGTAAGTTTGTCT
CTTACATTCAAATGAAGATATCAACGCCCCAAGCGAAGCTTAAAAAATAT
TAAATATCAGCTTTCAAAGCAAACATGAGAGGCTTTCATAAAAGTAAACC
GTATTTGCAAATCTTAGCGAGTCAATCTCTATTATCAAGGTTTTGTATAT
TAGAATCTTTCTTTCTTAAAGTTCTCGATTGTCCATACAGAAATAATAAG
GTTATGTACGAAAACTTTTCACTTCAGGTCGCCGATGGTTGTGGAACAGT
CAGCGGAGAAAACCCATGTTTAAACGGAGGAGATTGTTCTCTTTCAAATA
CTCTCTACGCTGGTTATTCTTGCCAATGTAATGGAGGATTCTCAGGACCA
ATGTGTAAAGTAAGTTTTTTTTACAAACATCTATTAACTAAGTTTGAATA
AACAAGGCGAATACTTTTTACACCGCAGTTTTCTTTCCATTGCAAAGAAG
GATTCTTAGGATCAATTTGTTCAAAAAAATTTTCAAAATAAACCTCTGTA
TTGCAAGTTTGGATGAACAAGCTAAACAAACTTAACACTGATTATTTTTT
TTATAATAAAGCATATTGTCCTGATTGGTTGTATCACGAATTTAAAGCCA
TCATATAGAGATATTCTTTCTATTATAGATCAGTGCTTGCTCAAAAAACC
CATGTCAAAACGGTGGTAGTTGTACGGCAAAACCATCCAGTCCTGGATTC
GAATGTGCTTGTGTTGCTCCCTATACTGGTGCCATCTGTCAGGTTAGTTC
ATGTTTAAGTATCATATTATCAATGCCACAGTGTGTACCTCAAAGATTGA
ACTTAATATTTTGCTAAAATAATGGAATCGTTAGTCCGACCTTTTATTTT
TTGGAGAATTTTTTTGAAGTTTTGAATTTATATGTGATAGTAAAGAGACA
CCATTGAATAAATTTTTTGGTGCCAAACCAAAACCTATTCATGATATTCA
TGACGTAATAATTACCGAAACAATCCGCTTTTTGCCAGTAGTGGAAATTT
AAGCTAGTAAAAAAATTATTTAAAACTTGCCATTACTGGCAAAAACCTGG
GGTGTTTTGTTACGCTGAAAACATTATGTAATAAATATCATGAATGAAAA
ACTTCAATTTTCCCAGGAATCGATCTGTTCTTTACAACAACCTTGCAAAA
ACGGAGGATCATGCGCAGTAGCGCCAGGAACACCTGGTTACCAATGCACA
TGTGCAAACAATGGATACACTGGACCCACTTGTGAAGCTTCGGCCTGCGA
CGTCAACCCCTGTGCTAATGGAGCCCAATGTAACCCATCTGCTGCATCCC
CAGGATATACTTGCACATGTCCAGTTGGATTTTCAGGACCAACTTGTAGT
GTAAGTATCATTAGAGTTATAACAGATTTCTGTCAACTAAACACTACTAA
GAATTATAAAGTTTTAAGCATATTACATACCATGAAAAATCGCAGAACCT
TTGAACGATAAAATTTCAAACTCGGAATTATAAAAGTTATAAACATAACC
TCACAAAACTTTTGAACTAATTCTATTCTTTCTCGCAACTTTTCAGGCTT
CAGCATGTGATGCCAACCCATGTAAAAACGGCGCAACATGTACCCCAGAT
GGCACCGCCCTTGGTTATTCTTGCGCATGCGTAGGAGGATATTCTGGATC
AACTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052944-exon-scaffold_222-1575043694:73905..74007 | TCONS_00052944-exon-scaffold_222-1575043694:73905..74007 | Clytia hemisphaerica | exon |
| TCONS_00052944-exon-scaffold_222-1575043694:73523..73636 | TCONS_00052944-exon-scaffold_222-1575043694:73523..73636 | Clytia hemisphaerica | exon |
| TCONS_00052944-exon-scaffold_222-1575043694:52008..52241 | TCONS_00052944-exon-scaffold_222-1575043694:52008..52241 | Clytia hemisphaerica | exon |
| TCONS_00052944-exon-scaffold_222-1575043694:51702..51811 | TCONS_00052944-exon-scaffold_222-1575043694:51702..51811 | Clytia hemisphaerica | exon |
| TCONS_00052944-exon-scaffold_222-1510915933:73905..74007 | TCONS_00052944-exon-scaffold_222-1510915933:73905..74007 | Clytia hemisphaerica | exon |
| TCONS_00052944-exon-scaffold_222-1510915933:73523..73636 | TCONS_00052944-exon-scaffold_222-1510915933:73523..73636 | Clytia hemisphaerica | exon |
| TCONS_00052944-exon-scaffold_222-1510915933:52008..52241 | TCONS_00052944-exon-scaffold_222-1510915933:52008..52241 | Clytia hemisphaerica | exon |
| TCONS_00052944-exon-scaffold_222-1510915933:51702..51811 | TCONS_00052944-exon-scaffold_222-1510915933:51702..51811 | Clytia hemisphaerica | exon |
| TCONS_00052944-exon-scaffold_222-1491911889:73905..74007 | TCONS_00052944-exon-scaffold_222-1491911889:73905..74007 | Clytia hemisphaerica | exon |
| TCONS_00052944-exon-scaffold_222-1491911889:73523..73636 | TCONS_00052944-exon-scaffold_222-1491911889:73523..73636 | Clytia hemisphaerica | exon |
| TCONS_00052944-exon-scaffold_222-1491911889:52008..52241 | TCONS_00052944-exon-scaffold_222-1491911889:52008..52241 | Clytia hemisphaerica | exon |
| TCONS_00052944-exon-scaffold_222-1491911889:51702..51811 | TCONS_00052944-exon-scaffold_222-1491911889:51702..51811 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_222 | supercontig | scaffold_222:51702..74007 - |
Blast
BLAST of TCONS_00052944 vs. Swiss-Prot (Human)
Match: FAT1 (Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 1.908e-27 Identity = 65/162 (40.12%), Postives = 79/162 (48.77%), Query Frame = 2
Query: 92 PMCKISA---CSKNPCQNGGSCTAKPSSPGFECACVAPYTGAICQESI--CSLQQPCKNGGSCAVAPGTPGYQCTCANNGYTGPTCEASA-CDVNPCANGAQCNPSAASPGYTCTCPVGFSGPTCSA--SACDANPCKNGATCTPDGTALGYSCACVGGYSG 553
P C ++A C+ NPCQNGG C P+ G+ C C A Y G C+ S+ CS +PC GG+C V G G+ C C YTG C+ S C PC NG C S G C C GF G C + C NPC +GA C + T Y C C Y G
Sbjct: 4007 PGCFLTATEDCASNPCQNGGVCNPSPAG-GYYCKCSALYIGTHCEISVNPCS-SKPCLYGGTCVVDNG--GFVCQC-RGLYTGQRCQLSPYCKDEPCKNGGTCFDSL--DGAVCQCDSGFRGERCQSDIDECSGNPCLHGALC--ENTHGSYHCNCSHEYRG 4159 HSP 2 Score: 107.457 bits (267), Expect = 3.522e-26 Identity = 60/156 (38.46%), Postives = 78/156 (50.00%), Query Frame = 2
Query: 5 NPCLNGGDCSLSNTLYAGYSCQCNGGFSGPMCKISA--CSKNPCQNGGSCTAKPSSPGFECACVAPYTGAICQESICSLQQPCKNGGSCAVAPGTPGYQCTCANNGYTGPTCEA--SACDVNPCANGAQCNPSAASPGYTCTCPVGFSGPTCSASA 460
NPC NGG C+ S GY C+C+ + G C+IS CS PC GG+C + GF C C YTG CQ S +PCKNGG+C G C C ++G+ G C++ C NPC +GA C + S Y C C + G C +A
Sbjct: 4020 NPCQNGGVCNPSPA--GGYYCKCSALYIGTHCEISVNPCSSKPCLYGGTCVV--DNGGFVCQCRGLYTGQRCQLSPYCKDEPCKNGGTC--FDSLDGAVCQC-DSGFRGERCQSDIDECSGNPCLHGALCENTHGS--YHCNCSHEYRGRHCEDAA 4166
The following BLAST results are available for this feature:
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