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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052936 ID=TCONS_00052936|Name=TCONS_00052936|organism=Clytia hemisphaerica|type=transcript|length=1945bpRun BLAST on NCBI transcript from alignment at scaffold_222:48820..75438- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052936 ID=TCONS_00052936|Name=TCONS_00052936|organism=Clytia hemisphaerica|type=transcript|length=26619bp|location=Sequence derived from alignment at scaffold_222:48820..75438- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00052936 vs. Swiss-Prot (Human)
Match: NOTC1 (Neurogenic locus notch homolog protein 1 OS=Homo sapiens GN=NOTCH1 PE=1 SV=4) HSP 1 Score: 218.009 bits (554), Expect = 4.550e-59 Identity = 187/490 (38.16%), Postives = 250/490 (51.02%), Query Frame = 2
Query: 32 QINLA-CNINPCQSGGICSPSSLVAAGYTCTCPTGFSGQTCTES--SCSGNPCATGSTCVPDASANGFSCTCTAGQSNPLC-NVADGCGTVSGENPCLNGGDCSLSNTLYAGYSCQCNGGFSGPMCKIS--ACSKNPCQNGGSCTAKPSSPGFECACVAPYTGAICQESICS-LQQPCKNGGSCAVASGTPGYQCTCANNGYTGPTCEA--SACDVNPCANGAQCNPSAAYPGYTCTCPVGFSGPTCSAS--ACDANPCKNGATCTPDGTALGYSCACVGGYSGSTCTASA--CDALPCFNGGTCIVDSSNDGFTCNCQPGYSGATCSQS--ACGPNPCQNGGSCQPDNSADGYTCTCEEGYFGVNCM--ASNCDMQPCQNGGSCEPDGSADGFTCTCEVGYFGVHCT--ASACTSHPCKYGGSCQPDGSDDG---YTCSCLTGFFGNQCE-LRSCVGSNPCQNGGLCFQQGISQACICNNGFTGSNCEV 1432
+INL C +PC SG GY C C G++G C + C+GNPC G TC + NGF+C C G +P C + + C + NPC++G C S GY C C+ G+SG C I+ C NPC NGG+C K + G+ C C ++G CQ +I PC N G+C GY+C C YTG TCE + C +PC NG +C S Y ++C CP G+ G TC C +PC++GA+C T GY C C GYSG C C PC NGG+C D N F C+C PG+ G C + C +PC+NG +C + D YTCTC G+ G++C +C C NGG+C DG + FTC C G+ G +C + C S PC +GG+CQ DG Y C+C G+ G C+ L S+PC+NGG C+Q C C +G+TG C+V
Sbjct: 639 EINLDDCASSPCDSGTCLDKID----GYECACEPGYTGSMCNINIDECAGNPCHNGGTC--EDGINGFTCRCPEGYHDPTCLSEVNECNS----NPCVHGA-CRDS---LNGYKCDCDPGWSGTNCDINNNECESNPCVNGGTC--KDMTSGYVCTCREGFSGPNCQTNINECASNPCLNQGTCI--DDVAGYKCNCLL-PYTGATCEVVLAPCAPSPCRNGGECRQSEDYESFSCVCPTGWQGQTCEVDINECVLSPCRHGASCQ--NTHGGYRCHCQAGYSGRNCETDIDDCRPNPCHNGGSC-TDGINTAF-CDCLPGFRGTFCEEDINECASDPCRNGANCT--DCVDSYTCTCPAGFSGIHCENNTPDCTESSCFNGGTCV-DG-INSFTCLCPPGFTGSYCQHDVNECDSQPCLHGGTCQ-----DGCGSYRCTCPQGYTGPNCQNLVHWCDSSPCKNGGKCWQTHTQYRCECPSGWTGLYCDV 1096 HSP 2 Score: 209.92 bits (533), Expect = 1.977e-56 Identity = 182/496 (36.69%), Postives = 244/496 (49.19%), Query Frame = 2
Query: 35 INL-ACNINPCQSGGICSPSSLVAAGYTCTCPTGFSGQTCTES--SCSGNPCATGSTCVPDASANGFSCTCTAGQSNPLCNVADGCGTVSGENPCLNGGDCSLSNTLYAGYSCQCNGGFSGPMCK--ISACSKNPCQNGGSCTAKPSSPGFECACVAPYTGAICQESICS-LQQPCKNGGSCAVASGTPGYQCTCANNGYTGPTCEAS--ACDVNPCANGAQCNPSAAYPGYTCTCPVGFSGPTCSASA--CDANPCKNGATCTPDGTALGYSCACVGGYSGSTCTAS--ACDALPCFNGGTCI--VDSSNDGFTCNCQPGYSGATCSQSA--CGPNPCQNGGSCQPDNSADGYTCTCEEGYFGVNCM--ASNCDMQPCQNGGSCEPDGSADGFTCTCEVGYFGVHC--TASACTSHPCKYGGSCQPDGSDDGYTCSCLTGFFGNQCEL----------RSCVG-SNPCQNGGLCFQQGISQACICNNGFTGSNCE 1429
IN+ C NPC +GG C G+TC CP G+ TC C+ NPC G+ S NG+ C C G S C++ + NPC+NGG C + +GY C C GFSGP C+ I+ C+ NPC N G+C + G++C C+ PYTGA C+ + PC+NGG C + + C C G+ G TCE C ++PC +GA C + GY C C G+SG C C NPC NG +CT DG + C C+ G+ G+ C C + PC NG C VDS +TC C G+SG C + C + C NGG+C + + +TC C G+ G C + CD QPC +GG+C+ DG + CTC GY G +C C S PCK GG C + Y C C +G+ G C++ R V + CQ+GGLC G + C C G+TGS CE
Sbjct: 677 INIDECAGNPCHNGGTCEDG---INGFTCRCPEGYHDPTCLSEVNECNSNPCVHGAC---RDSLNGYKCDCDPGWSGTNCDINN---NECESNPCVNGGTCK---DMTSGYVCTCREGFSGPNCQTNINECASNPCLNQGTCIDDVA--GYKCNCLLPYTGATCEVVLAPCAPSPCRNGGECRQSEDYESFSCVCPT-GWQGQTCEVDINECVLSPCRHGASC--QNTHGGYRCHCQAGYSGRNCETDIDDCRPNPCHNGGSCT-DGINTAF-CDCLPGFRGTFCEEDINECASDPCRNGANCTDCVDS----YTCTCPAGFSGIHCENNTPDCTESSCFNGGTCV--DGINSFTCLCPPGFTGSYCQHDVNECDSQPCLHGGTCQ-DGCG-SYRCTCPQGYTGPNCQNLVHWCDSSPCKNGGKCWQTHTQ--YRCECPSGWTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCVDAGNTHHCRCQAGYTGSYCE 1143 HSP 3 Score: 199.904 bits (507), Expect = 4.310e-53 Identity = 179/497 (36.02%), Postives = 241/497 (48.49%), Query Frame = 2
Query: 110 YTCTCPTGFSGQTCTES--SCSGNPCATGSTCVPDASANGFSCTCTAGQSNPLCNV---------------ADGCGTVS-------------------GENPCLNGGDCSLSNTLYAGYSCQCNGGFSGPMCKISA--CSKNPCQNGGSCTAKPSSPGFECACVAPYTGAICQESICS-LQQPCKNGGSCAVASGTPGYQCTCANNGYTGPTC--EASACDVNPCANGAQCNPSAAYPGYTCTCPVGFSGPTCSAS--ACDANPCKNGATCTPDGTALGYSCACVGGYSGSTCT--ASACDALPCFNGGTCIVDSSNDGFTCNCQPGYSGATCS--QSACGPNPCQNGGSCQPDNSADGYTCTCEEGYFGVNCMAS--NCDMQPCQNGGSCEPDGSADGFTCTCEVGYFGVHCTASA--CTSHPCKYGGSCQPDGSDDGYTCSCLTGFFGNQCE--LRSCVGSNPCQNGGLCFQQGISQACICNNGFTGSNCEVQPP 1441
+ C CPTGF+G C C+ PC G+ C+ N ++C CT G + C V DG T + PC +GG C + Y C C G +GP C+I+ C+ +PC + G+C K G+ECAC YTG++C +I PC NGG+C G G+ C C GY PTC E + C+ NPC +GA C S GY C C G+SG C + C++NPC NG TC D T+ GY C C G+SG C + C + PC N GTCI D + G+ CNC Y+GATC + C P+PC+NGG C+ + ++C C G+ G C C + PC++G SC+ + G+ C C+ GY G +C C +PC GGSC DG + + C CL GF G CE + C S+PC+NG C S C C GF+G +CE P
Sbjct: 512 FQCECPTGFTGHLCQYDVDECASTPCKNGAKCL--DGPNTYTCVCTEGYTGTHCEVDIDECDPDPCHYGSCKDGVATFTCLCRPGYTGHHCETNINECSSQPCRHGGTCQDRDN---AYLCFCLKGTTGPNCEINLDDCASSPC-DSGTCLDKID--GYECACEPGYTGSMCNINIDECAGNPCHNGGTCE--DGINGFTCRCPE-GYHDPTCLSEVNECNSNPCVHGA-CRDSLN--GYKCDCDPGWSGTNCDINNNECESNPCVNGGTCK-DMTS-GYVCTCREGFSGPNCQTNINECASNPCLNQGTCIDDVA--GYKCNCLLPYTGATCEVVLAPCAPSPCRNGGECRQSEDYESFSCVCPTGWQGQTCEVDINECVLSPCRHGASCQ--NTHGGYRCHCQAGYSGRNCETDIDDCRPNPCHNGGSCT-DGINTAF-CDCLPGFRGTFCEEDINEC-ASDPCRNGANCTDCVDSYTCTCPAGFSGIHCENNTP 985 HSP 4 Score: 186.422 bits (472), Expect = 8.399e-49 Identity = 173/489 (35.38%), Postives = 236/489 (48.26%), Query Frame = 2
Query: 35 INLACNINPCQSGGICSPSSLVAAGYTCTCPTGFSGQTCTESS-CSGNPCATGSTCVPDASANGFSCTCTAGQSNPLCNV-ADGCGTVSGENPCLNGGDCSLSNTLYAGYSCQCNGGFSGPMCK--ISACSKNPCQNGGSCTAKPS-SPGFECACVAPYTGAICQESICSLQ-QPCKNGGSCAVASGTPGYQCTCANNGYTGPTC--EASACDVNP--CANGAQCNPSAAYPGYTCTCPVGFSGPTCSASA--CDANPCKNGATCTPDGTALGYSCACVGGYSGSTCTA-SACDALPCFNGGTCIVDSSNDGFTCNCQPGYSGATCSQSA----CGPNPCQNGGSCQPDNSADGYTCTCEEGYFGVNCM--ASNCDMQPCQNGGSCEPDGSADGFTCTCEVGYFGVHCTA--SACTSHPCKYGGSCQPDGSDDGYTCSCLTGFFGNQCE--LRSCVGSNPCQNGGLCFQQGISQACICNNGFTGSNCEV 1432
++ AC NPC++GG C +L Y C CP G+SG++C ++ C+ NPCA G C+P ++ + C C P C + CG G C +GG C + Y C C +GP C+ CS +PCQNGG+C +P+ ECAC+ +TG C+E+I CKNGG+C G Y C C +TG C + C + P C NG C+ + GY C C G++G CS + C + C +GATC D A Y C C G +G C AC + PC G C + N C C GY+G CSQ G NPC++ G C N+ + C C +GY G C + C PCQN +C F C C GY GVHC C S PC + G C ++ + C C TGF G+ C+ + C S PC+NG C + C+C G+TG++CEV
Sbjct: 102 LDNACLTNPCRNGGTCDLLTLTE--YKCRCPPGWSGKSCQQADPCASNPCANGGQCLPFEAS--YICHCPPSFHGPTCRQDVNECGQKPGL--CRHGGTC---HNEVGSYRCVCRATHTGPNCERPYVPCSPSPCQNGGTC--RPTGDVTHECACLPGFTGQNCEENIDDCPGNNCKNGGAC--VDGVNTYNCRCPPE-WTGQYCTEDVDECQLMPNACQNGGTCH--NTHGGYNCVCVNGWTGEDCSENIDDCASAACFHGATCH-DRVASFY-CECPHGRTGLLCHLNDACISNPCNEGSNCDTNPVNGKAICTCPSGYTGPACSQDVDECSLGANPCEHAGKCI--NTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCL--DQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINE--FQCECPTGFTGHLCQYDVDEC-ASTPCKNGAKCLDGPNTYTCVCTEGYTGTHCEV 565 HSP 5 Score: 161.77 bits (408), Expect = 4.065e-41 Identity = 183/582 (31.44%), Postives = 244/582 (41.92%), Query Frame = 2
Query: 32 QINLA-CNINPCQSGGICSPSSLVAAGYTCTCPTGFSGQTCTES--SCSGNPCATGSTCVPDASANGFSCTCTAGQSNPLCNV-ADGCGTVSGENPCLNGGDCSL-SNTLYAGYSCQCNGGFSGPMCK--ISACSKNPCQNGGSCTA------------------KPSSPG------------------FECACVAPYTGAICQESICS-LQQPCKNGGSCAVASGTPGYQCTCANNGYTGPTCE--ASACDVNPCANGAQCNPSAAYPGYTCTCPVGFSGPTCSA--------------------------------------------------SACDANPCKNGATCTPDGTALGYSCACVGGYSGSTCTAS--ACDALPCFNGGTCIVDSSNDGFTCNCQPGYSGATCSQSACGPNP----------CQNGGSCQPDNSADGYTCTCEEGYFGVNCM--ASNCDMQPCQNGGSCEPDGSADGFTCTCEVGYFGVHC--TASACTSHPCKYGGSCQ-PDGSDDGYTCSCLTGFFGNQCE--LRSCVGSNPCQNGGLCFQQGISQACICNNGFTGSNCEV 1432
++ LA C +PC++GG C S + ++C CPTG+ GQTC C +PC G++C + G+ C C AG S C D C NPC NGG C+ NT + C C GF G C+ I+ C+ +PC+NG +CT + ++P F C C +TG+ CQ + QPC +GG+C G+ Y+CTC GYTGP C+ CD +PC NG +C + Y C CP G++G C C +PC+NGATCT GYSC CV GY G C+ C + PC NGGTC+ D N + C+C G G C + NP C N G+C + GY+CTC G+ G C + C PC G+ + F C C G+ G C + C PCK GG+C + G+ C C GF G CE R+C GS C NGG C S C+C FTG C+
Sbjct: 827 EVVLAPCAPSPCRNGGECRQSEDYES-FSCVCPTGWQGQTCEVDINECVLSPCRHGASC--QNTHGGYRCHCQAGYSGRNCETDIDDCRP----NPCHNGGSCTDGINTAF----CDCLPGFRGTFCEEDINECASDPCRNGANCTDCVDSYTCTCPAGFSGIHCENNTPDCTESSCFNGGTCVDGINSFTCLCPPGFTGSYCQHDVNECDSQPCLHGGTCQDGCGS--YRCTCPQ-GYTGPNCQNLVHWCDSSPCKNGGKC--WQTHTQYRCECPSGWTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCVDAGNTHHCRCQAGYTGSYCEDLVDECSPSPCQNGATCT--DYLGGYSCKCVAGYHGVNCSEEIDECLSHPCQNGGTCL-DLPNT-YKCSCPRGTQGVHCEINVDDCNPPVDPVSRSPKCFNNGTCV--DQVGGYSCTCPPGFVGERCEGDVNECLSNPCDARGTQNCVQRVNDFHCECRAGHTGRRCESVINGCKGKPCKNGGTCAVASNTARGFICKCPAGFEGATCENDARTC-GSLRCLNGGTCISGPRSPTCLCLGPFTGPECQF 1385 HSP 6 Score: 154.451 bits (389), Expect = 8.786e-39 Identity = 147/444 (33.11%), Postives = 209/444 (47.07%), Query Frame = 2
Query: 170 GNPCATGSTCVPDASANGF-SCTCTAGQSNPLCNVADGCGTVSGENPCLNGGDCSLSNTL-YAGYSCQCNGGFSGPMCKI---SACSKNPCQNGGSCTAKPSSPGFECACVAPYTGAICQESICSLQQPCKNGGSCAVASGTPGYQCTCANNGYTGPTC--EASACDVNP--CANGAQCNPSAAYPGYTCTCPVGFSGPTCSA--SACDANPCKNGATCTPDGTALGYSCACVGGYSGSTCTASA--CDALPCFNGGTCIVDSSNDGFTCNCQPGYSGATCSQSA----CGPNPCQNGGSCQPDNSADGYTCTCEEGYFGVNCMA--SNCDMQPCQNGGSCEPDGSADGFTCTCEVGYFGVHCTA-SACTSHPCKYGGSCQPDGSDDGYTCSCLTGFFGNQC--ELRSC-VGSNPCQNGGLCFQQGISQACICNNGFTGSNCEV 1432
G C G C +ANG +C C P C + C + PC N G C + + A Y+C C GFSGP+C +AC NPC+NGG+C + ++C C ++G CQ++ PC NGG C + Y C C + + GPTC + + C P C +G C+ Y C C +GP C C +PC+NG TC P G + + CAC+ G++G C + C C NGG C VD N + C C P ++G C++ PN CQNGG+C N+ GY C C G+ G +C +C C +G +C F C C G G+ C AC S+PC G +C + + C+C +G+ G C ++ C +G+NPC++ G C S C C G+TG CE+
Sbjct: 28 GETCLNGGKC---EAANGTEACVCGGAFVGPRCQDPNPCLST----PCKNAGTCHVVDRRGVADYACSCALGFSGPLCLTPLDNACLTNPCRNGGTCDLLTLTE-YKCRCPPGWSGKSCQQADPCASNPCANGGQCLPFEAS--YICHCPPS-FHGPTCRQDVNECGQKPGLCRHGGTCHNEVG--SYRCVCRATHTGPNCERPYVPCSPSPCQNGGTCRPTGD-VTHECACLPGFTGQNCEENIDDCPGNNCKNGGAC-VDGVNT-YNCRCPPEWTGQYCTEDVDECQLMPNACQNGGTCH--NTHGGYNCVCVNGWTGEDCSENIDDCASAACFHGATCH--DRVASFYCECPHGRTGLLCHLNDACISNPCNEGSNCDTNPVNGKAICTCPSGYTGPACSQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEI 451 HSP 7 Score: 142.124 bits (357), Expect = 8.682e-35 Identity = 137/417 (32.85%), Postives = 182/417 (43.65%), Query Frame = 2
Query: 47 CNINPCQSGGICSPSSLVAAGYTCTCPTGFSGQTCTE--SSCSGNPCATGSTCVPDASANGFSCTCTAGQSNPLCNVADGCGTVSGENP-------CLNGGDC-SLSNTLYAGYSCQCNGGFSGPMCK--ISACSKNPCQNGGSCTAKPSSPGFECACVAPYTGAICQESICS-LQQPCKNGGSCAVASGTPGYQCTCANNGYTGPTCEASACDVNPCANGAQCNPS--------AAYPGYTCTCPVGFSGPTCS--ASACDANPCKNGATCTPDGTALGYSCACVGGYSGSTC--TASACDALPCFNGGTCIVDSSN-DGFTCNCQPGYSGATCSQSA--CGPNPCQNGGSCQPDNSADGYTCTCEEGYFGVNCMASNCDM----QPCQNGGSCEPDGSADGFTCTCEVGYFGVHC 1201
C+ PC GG C Y CTCP G++G C C +PC G C + + C C +G + C+V V+ + C +GG C NT + C+C G++G C+ + CS +PCQNG +CT G+ C CVA Y G C E I L PC+NGG+C T Y+C+C G G CE + D NP + +P GY+CTCP GF G C + C +NPC T + C C G++G C + C PC NGGTC V S+ GF C C G+ GATC A CG C NGG+C + TC C + G C PC N G+CEP + + C C + G+ C
Sbjct: 1025 CDSQPCLHGGTCQDG---CGSYRCTCPQGYTGPNCQNLVHWCDSSPCKNGGKCW--QTHTQYRCECPSGWTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCVDAGNT----HHCRCQAGYTGSYCEDLVDECSPSPCQNGATCTDYLG--GYSCKCVAGYHGVNCSEEIDECLSHPCQNGGTCLDLPNT--YKCSCP-RGTQGVHCEINVDDCNPPVDPVSRSPKCFNNGTCVDQVGGYSCTCPPGFVGERCEGDVNECLSNPCDARGTQNCVQRVNDFHCECRAGHTGRRCESVINGCKGKPCKNGGTCAVASNTARGFICKCPAGFEGATCENDARTCGSLRCLNGGTCI--SGPRSPTCLCLGPFTGPECQFPASSPCLGGNPCYNQGTCEPTSESPFYRCLCPAKFNGLLC 1425 The following BLAST results are available for this feature:
BLAST of TCONS_00052936 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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