TCONS_00052932 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052932
Unique NameTCONS_00052932
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length361

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052932 ID=TCONS_00052932|Name=TCONS_00052932|organism=Clytia hemisphaerica|type=transcript|length=361bp
CAACAAACAAGTACTTTCATCCACAGAACATAACTGGAATATTGCTGCAT
CTGTAAGCTATTCATCAGGAACGTTGACCGAAGCGATTGCCAAAGTTCAA
ATGAGTTTATCAGTGGCTTACGGCGGGAAGCAGATTGATacaaaaaaaga
agattggAGCAAATCAACTGAAACGTCAGAACAAATCCAATTTACATTGA
AAGCCGGTGAAACAGTCTATCTTTGGCAATATCAAATTGGCTTTGGAAAA
AATACAGGACACCCGGTACTTTTCGGGAAGAATCTTGTCACCAGTTCTTC
GAATGTTCCACCAAAAGACCCTGCCTACAACACAAAATCTTACACAATCA
GCAAATGAAAA
Run BLAST on NCBI

protein sequence of TCONS_00052932-protein

>TCONS_00052932-protein ID=TCONS_00052932-protein|Name=TCONS_00052932-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
NKQVLSSTEHNWNIAASVSYSSGTLTEAIAKVQMSLSVAYGGKQIDTKKE
DWSKSTETSEQIQFTLKAGETVYLWQYQIGFGKNTGHPVLFGKNLVTSSS
NVPPKDPAYNTKSYTISK
Run BLAST on NCBI

transcript from alignment at scaffold_222:21073..22401-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052932 ID=TCONS_00052932|Name=TCONS_00052932|organism=Clytia hemisphaerica|type=transcript|length=1329bp|location=Sequence derived from alignment at scaffold_222:21073..22401- (Clytia hemisphaerica)
CAACAAACAAGTACTTTCATCCACAGAACATAACTGGAATATTGCTGCAT
CTGTAAGCTATTCATCAGGAACGTTGACCGAAGCGATTGCCAAAGTTCAA
ATGAGTTTATCAGTGGCTTACGGCGGGAAGCAGGTTAGTAGAAAAGAAAA
GTAAAAATAAGTGCTTAATACAGCTTATCAACTGCTGAGCTAGAATTTGA
AAATCCGAGGGGTGATAGGGTTTCCTGATTCGATATACATGTTTTTTTTT
TATAAGCATTTGTTTTTTGGGAAACAAGCTCAGTTATACTTAGAGATATT
TTAGACTCAGGCTCGAAGTATGTTTATCATATGCTTATTTTTCCAAAAAA
ATTCGAGTCTCCAATTTTTCCAAAATCTGTCGTTGCTATACATGAGGATA
GGGAAGTAAGTAATCACACAAAGATTTTTCAGGAAAGTTGTGAACGATTG
CCGCGTTTACGCTCGTATTTTTTTTAATTAAAATGTCGTTTGACGAAACT
TTTTGTCAATTTAATGCAGGCTGTGTACTGTATTAAACATCTATTAGAAA
AAAAAATTTTCACTTACACACCTCAAAAGCAAGCTCAGTAATATGCTTGT
AATATGTTTATTTTTTAGACAAATTCAGGTCTCGGTATGCTTATAAAAAA
AAAGATGTACTGCTCCTTCCCAAGTTCCGTTTACCTTAAAGGAAGAAATT
TTGGCGGAAAGAAAATTTAGCGGATTTAGTTACTTAAGTTCCCACCAAAA
TTTATTTTTACCTCCATCCGCCAAATTAAATTCCCGCCAAATTTATTTTA
TTTAACGCTTTCTCCGAATTGATGCTCTTTCAGGCCTTAAAACAGGTTTT
TTTTTGCTTATTATGATAACGATTTTGGTCGAAAATATCTTGCAAACGCC
CAATTAAATTATCTTCAAATTTAATTTTTCCAGCAATCCGCGATATTAAA
TTCCCCCTAAAAAAACTTTTTCGACCATACCCGCGAATTTAAATTTGCGC
CAAAATTTCTTCCTGACCGCCAACTATTGAAAGACTGTCTAGAAGTCGTA
AATTGCTTTGCTATCCATGTAAATTTTTTTACCCTTGAAATATTGATTTA
GATTGATACAAAAAAAGAAGATTGGAGCAAATCAACTGAAACGTCAGAAC
AAATCCAATTTACATTGAAAGCCGGTGAAACAGTCTATCTTTGGCAATAT
CAAATTGGCTTTGGAAAAAATACAGGACACCCGGTACTTTTCGGGAAGAA
TCTTGTCACCAGTTCTTCGAATGTTCCACCAAAAGACCCTGCCTACAACA
CAAAATCTTACACAATCAGCAAATGAAAA

Coding sequence (CDS) from alignment at scaffold_222:21073..22401-

>TCONS_00052932 ID=TCONS_00052932|Name=TCONS_00052932|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at scaffold_222:21073..22401- (Clytia hemisphaerica)
ATTGATACAAAAAAAGAAGATTGGAGCAAATCAACTGAAACGTCAGAACA
AATCCAATTTACATTGAAAGCCGGTGAAACAGTCTATCTTTGGCAATATC
AAATTGGCTTTGGAAAAAATACAGGACACCCGGTACTTTTCGGGAAGAAT
CTTGTCACCAGTTCTTCGAATGTTCCACCAAAAGACCCTGCCTACAACAC
AAAATCTTACACAATCAGCAAATGAAACAAACAAGTACTTTCATCCACAG
AACATAACTGGAATATTGCTGCATCTGTAAGCTATTCATCAGGAACGTTG
ACCGAAGCGATTGCCAAAGTTCAAATGAGTTTATCAGTGGCTTACGGCGG
GAAGCAGATTGATACAAAAAAAGAAGATTGGAGCAAATCAACTGAAACGT
CAGAACAAATCCAATTTACATTGAAAGCCGGTGAAACAGTCTATCTTTGG
CAATATCAAATTGGCTTTGGAAAAAATACAGGACACCCGGTACTTTTCGG
GAAGAATCTTGTCACCAGTTCTTCGAATGTTCCACCAAAAGACCCTGCCT
ACAACACAAAATCTTACACAATCAGCAAATGAAACAAACAAGTACTTTCA
TCCACAGAACATAACTGGAATATTGCTGCATCTGTAAGCTATTCATCAGG
AACGTTGACCGAAGCGATTGCCAAAGTTCAAATGAGTTTATCAGTGGCTT
ACGGCGGGAAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033438XLOC_033438Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052932-proteinTCONS_00052932-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052932-exon-scaffold_222-1575043694:22269..22401TCONS_00052932-exon-scaffold_222-1575043694:22269..22401Clytia hemisphaericaexon
TCONS_00052932-exon-scaffold_222-1575043694:21073..21300TCONS_00052932-exon-scaffold_222-1575043694:21073..21300Clytia hemisphaericaexon
TCONS_00052932-exon-scaffold_222-1510915933:22269..22401TCONS_00052932-exon-scaffold_222-1510915933:22269..22401Clytia hemisphaericaexon
TCONS_00052932-exon-scaffold_222-1510915933:21073..21300TCONS_00052932-exon-scaffold_222-1510915933:21073..21300Clytia hemisphaericaexon
TCONS_00052932-exon-scaffold_222-1491911889:22269..22401TCONS_00052932-exon-scaffold_222-1491911889:22269..22401Clytia hemisphaericaexon
TCONS_00052932-exon-scaffold_222-1491911889:21073..21300TCONS_00052932-exon-scaffold_222-1491911889:21073..21300Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_222supercontigscaffold_222:21073..22401 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.50359	0.89461	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028988CEL-III_C
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052932 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top