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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052931 ID=TCONS_00052931|Name=TCONS_00052931|organism=Clytia hemisphaerica|type=transcript|length=1427bp
GTCTTTTCGGAGTTCGAATGAATGAAACGGATGAattgatttcgattttt
tgattgagatttttcatcgCATTGGAGCAGACATATTTTGGAGACGGTTG
AAATTTGCAAATAGATGTTTATTTGTGAAATGTTTTCTCAGattgaTTGA
TTGTTTCCATTGTTTGTTTCATCGtttccaatgacgtcatcggttccAAA
TTATTTCCACattcccAGCATGACAGCACGCATGAGAAGTTACACCCGTC
GTTTTTGACGCCGTTCCTACGATTACGTTATTTATTCATTCCGTCTCTAT
AGTTCTGTTTGTGTTCAAACATTACTACCTtcattttggcttgtttttag
aTGTATTTTCACCACTTCAATAACTTGACTATAATTATGTCAATCGTCAC
TAGTTTTGCTGGCGTGTCTACTCTTACGCCCTTACGTTTCCGCCTTTACG
AATCACCTTGGTTGAATATGAAAAAGAGTACAGTGCTAAAACTCATGTCA
CTATTGGTTTCGATTAGACCATTTCCTTTGTAAATATCCGATTCTTTTCG
CTAACTCGGTGAAATTTTGTTCAGTCAGTCATCagggaaaaatttttaaa
tactattttagTGGAAAACCATGTCAACCGTGACCTTGGTGAAAACATGA
ATTTTTCTAACCTTTGCTCCCAGGATTTTTTTGTATGGCTTACGTTTGAC
ACCTCCAAGGGTGAAACAATGAAGTTAAATTATCTAAGTGGCTGTCAAAG
TTTTTTCGGCCTTTTTCGGGAGAGACTCATGGGTTGTAAATATTTGATGG
TTTCGATTTGAAATTGCTCTTCATTTCAAGCCTATGAACGTTTTTTGATA
TATATACgacaaatatttatattatatttagATAAGAATAATATTTAATT
GTATAGAATTAATTGTAATCAATTGTGGAatcaatgttattttttatccc
tttaagtgccaatgtcgtgtATATCAGACATGGACTATGATGTAGGAGCC
CTCCTGTAATGTCCAGTTTGAATAGAAATGGTCATTTTTGGTCTTACTCG
TAGGAatcggattgggcttcatggccaagcaaaaaaataaatcaaaagtg
agtcttttcagcgagattttaagctaaaaagtcaaaaaatgctaagattt
gataaaaatccacttttttaagattttgtccattttttgatcatttttgg
tcagcaagtgatccaagaacctccaaatttggccctgattaacttgattc
tgtcctccagcgaattagtttGTAGTTTTACCActcggcacctttctatc
attcagtcagGCCCGCGTAGGGTTAATTGTAAATAGTATACGTTCTCatt
catttattttcatttataaaaaatttacaaatcgACATTAGGCGACTTGA
GactaaagaaagaaagaaagcctGGAA Run BLAST on NCBI transcript from alignment at scaffold_222:529972..531959+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052931 ID=TCONS_00052931|Name=TCONS_00052931|organism=Clytia hemisphaerica|type=transcript|length=1988bp|location=Sequence derived from alignment at scaffold_222:529972..531959+ (Clytia hemisphaerica)
GTCTTTTCGGAGTTCGAATGAATGAAACGGATGAattgatttcgattttt
tgattgagatttttcatcgCATTGGAGCAGACATATTTTGGAGACGGTTG
AAATTTGCAAATAGATGTTTATTTGTGAAATGTTTTCTCAGGttgttatg
aatttatttttacgGTGAAGAAAGAAACTGtcgtttattttattttatga
taTTGTTCATGTTTCAGcatgtttcaaatgtttttcattcgattatttat
ttttcagattgaTTGATTGTTTCCATTGTTTGTTTCATCGtttccaatga
cgtcatcggttccAAATTATTTCCACGTAAGTATATTTAATCATGTACTT
GGTTTCCGGCTGATGTGAAATTGCCTAAAGCCTAAATTTTTCGGCATAct
ggaattttttaaacaaatgaaTCCATTCAAAAATCTTGGAAAGGAGGGCT
TGGTTAGCCTGTATCAAACTCTTCTTGGTGGACTGAAAAGACCAAGGGAA
ATTCAGTATAATGTATGAATGTACAGTTCAGACTTTCATGTGACTGAGAC
GAATCCACGCAAGTCTCGGTTGTAAAGTGTGAACTATTTTCAGAATTAAG
TTTCTTCAATTAGTCGAATTAATGCAATTTTTTTGTACTcggtgtttttt
aaacttttcctCCAGACCAGATCAACATTCTCATTAGCCACTTCTTTAAA
AAACCATTTATTCATCTTCGAGTTAACAAGTTTTGTTGTGCAATTAACCT
CCaatcgatttttatttttagattcccAGCATGACAGCACGCATGAGAAG
TTACACCCGTCGTTTTTGACGCCGTTCCTACGATTACGTTATTTATTCAT
TCCGTCTCTATAGTTCTGTTTGTGTTCAAACATTACTACCTtcattttgg
cttgtttttagaTGTATTTTCACCACTTCAATAACTTGACTATAATTATG
TCAATCGTCACTAGTTTTGCTGGCGTGTCTACTCTTACGCCCTTACGTTT
CCGCCTTTACGAATCACCTTGGTTGAATATGAAAAAGAGTACAGTGCTAA
AACTCATGTCACTATTGGTTTCGATTAGACCATTTCCTTTGTAAATATCC
GATTCTTTTCGCTAACTCGGTGAAATTTTGTTCAGTCAGTCATCagggaa
aaatttttaaatactattttagTGGAAAACCATGTCAACCGTGACCTTGG
TGAAAACATGAATTTTTCTAACCTTTGCTCCCAGGATTTTTTTGTATGGC
TTACGTTTGACACCTCCAAGGGTGAAACAATGAAGTTAAATTATCTAAGT
GGCTGTCAAAGTTTTTTCGGCCTTTTTCGGGAGAGACTCATGGGTTGTAA
ATATTTGATGGTTTCGATTTGAAATTGCTCTTCATTTCAAGCCTATGAAC
GTTTTTTGATATATATACgacaaatatttatattatatttagATAAGAAT
AATATTTAATTGTATAGAATTAATTGTAATCAATTGTGGAatcaatgtta
ttttttatccctttaagtgccaatgtcgtgtATATCAGACATGGACTATG
ATGTAGGAGCCCTCCTGTAATGTCCAGTTTGAATAGAAATGGTCATTTTT
GGTCTTACTCGTAGGAatcggattgggcttcatggccaagcaaaaaaata
aatcaaaagtgagtcttttcagcgagattttaagctaaaaagtcaaaaaa
tgctaagatttgataaaaatccacttttttaagattttgtccattttttg
atcatttttggtcagcaagtgatccaagaacctccaaatttggccctgat
taacttgattctgtcctccagcgaattagtttGTAGTTTTACCActcggc
acctttctatcattcagtcagGCCCGCGTAGGGTTAATTGTAAATAGTAT
ACGTTCTCattcatttattttcatttataaaaaatttacaaatcgACATT
AGGCGACTTGAGactaaagaaagaaagaaagcctGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052931-exon-scaffold_222-1491911889:529972..530112 | TCONS_00052931-exon-scaffold_222-1491911889:529972..530112 | Clytia hemisphaerica | exon |
| TCONS_00052931-exon-scaffold_222-1510915933:529972..530112 | TCONS_00052931-exon-scaffold_222-1510915933:529972..530112 | Clytia hemisphaerica | exon |
| TCONS_00052931-exon-scaffold_222-1575043694:529972..530112 | TCONS_00052931-exon-scaffold_222-1575043694:529972..530112 | Clytia hemisphaerica | exon |
| TCONS_00052931-exon-scaffold_222-1491911889:530229..530297 | TCONS_00052931-exon-scaffold_222-1491911889:530229..530297 | Clytia hemisphaerica | exon |
| TCONS_00052931-exon-scaffold_222-1510915933:530229..530297 | TCONS_00052931-exon-scaffold_222-1510915933:530229..530297 | Clytia hemisphaerica | exon |
| TCONS_00052931-exon-scaffold_222-1575043694:530229..530297 | TCONS_00052931-exon-scaffold_222-1575043694:530229..530297 | Clytia hemisphaerica | exon |
| TCONS_00052931-exon-scaffold_222-1491911889:530743..531959 | TCONS_00052931-exon-scaffold_222-1491911889:530743..531959 | Clytia hemisphaerica | exon |
| TCONS_00052931-exon-scaffold_222-1510915933:530743..531959 | TCONS_00052931-exon-scaffold_222-1510915933:530743..531959 | Clytia hemisphaerica | exon |
| TCONS_00052931-exon-scaffold_222-1575043694:530743..531959 | TCONS_00052931-exon-scaffold_222-1575043694:530743..531959 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_222 | supercontig | scaffold_222:529972..531959 + |
Blast
The following BLAST results are available for this feature:
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