TCONS_00052927 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052927
Unique NameTCONS_00052927
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1876

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052927 ID=TCONS_00052927|Name=TCONS_00052927|organism=Clytia hemisphaerica|type=transcript|length=1876bp
CGGGTGAGCACAAAAATCAATCGATTGGGTCGGTGCCGTAATATTTGCTG
ATGTAAACAGAAGATCGAAAGTGAATCCAAGATGGCGgcttcaaaacaac
aaaatgagaTAGAATCGATGAATTTTAACCTTTTTGAAGACCATTCACGA
GAAGTATTCCAAAAGTTTCAGTCTTTAAGGGATGACAAAACATTATGTGA
TGTCAAAATGATTGTTGGAAATCGCGAAATACTTGCACACAAATTTCTAT
TGGCTTCTTCAGTACCCTACTTTTATTCAATGTTTTCTCACAATCTCATT
GAAAGCAGACAAGAAACAATAACACTAAAAGATATGGACCCTGATTCAGT
TAGCCAACTTATTGATTTTGTATATACCTCTAAAATTTATATTGATCAAG
AGAATGTTCAAAATCTTTTGCGAATGGCAACAATTTTGCAAATGGTGAGA
GTTCAAGAAAAATGTTGTGAATTTTTAGAACACCAACTTCACCCTTCAAA
CAGTCttggaatttttgtttttgctgaaaTGCACGGGTGTTCAGACTTGA
AGAAGAAAGCTAAGAACTATTGTGATCGTAATTTTATTAAAgttgtaaaa
gaatatgagttCTTATCACTCCCTTTTGAAAGAGTGAAATGGTTTTTACA
ACAGGATGGTTTATGTGTGGGAACAGAAATGGAggtACTAGAATCGGTAT
TACGATGGATCAACCATGACACAGGGGAACGGAAAGGTCATCTAGTTGAC
TTGCTTGGTCTCGTAAGACTTCATCTTTTACCAAAATCTCATTTACAAAC
ATTGGTTACAGACAATGTTTCAATACAAAATGGGGAAGGAGCTTTGGATT
TAATCACTGATATCATCCAGGACATTGACAAGAAAGTCATTCCAGTCACC
AAACGAAAACCACTTGGTCTTGAAGTCATCTTTTGTATGGGTGGCTACAA
CAAACAGTCTTATGCTTCATACGATTGCTTTAACCCAGATACTGGACTAT
GGACTCACCTTGGAGAAATGCCCAAAGCTAAGAGCGGTGCTGGTGCagta
tttttagGTGGTTTACTTTACATGGTAGGGGGTCGTACAAACTCACCACT
GTTTGACAAACTCGATTCTGACTCTGCCAACGTTGAAAGATACGATCCTT
TTACTCACGAATGGACTTCTGTTGCTAAGTTAAATACACCACGCCACCGT
CTTGGCGTGGCGTCAATCGATGGCGTAATTTATGCAGTGGGTGGTAGTGA
TGGTTTGATGAATCTGAACTCTGTGGAGAAATACAGTGTCGAAAGTGATT
CATGGACATTATGTGCACCAATGACTACCCCAAGGATGGGTGTTGGTGTA
GCAGTATTAGATGGTCTTTTGTACGCTGTTGGTGGATTCGATTCTGAGAA
CCGTTTACGAACAGTTGAATGTTATTGTCCGCAAGAAAACACGTGGAAAA
CGATCGCTCCTTTGAACACTCCGCGAAGTGGAGCTGGTGTGGTCGCCATG
AATGGGCATGTGTACGCACTTGGTGGTTACAATGGAGTCGCACAGTTGAA
CAGTGTTGAAAGATATTGCCCGCAAGAAGATCACTGGTGTCTCGTGACGC
CTATGAATGAACATCGAAGTGCTCTCAGTGTGGCTGTCATCAAGAATAAA
CTGTTTGCTCTAGGTGGTTATGATGGTGAGAAATTTTTGGACGGTGTCGA
ATCATACGATCAAGATAGTGGAGAATGGAGGCTAGTCAAACCGTTACCGG
ATCCACGGAGTGGGGCTGGTGTCACAGTCGGTACCATACCTCTACCGTGA
AAGATGCGTTGGTATAAAATGATtccgtgtgacgtcattttcatccACGA
TCAGCCAGTTACCTAAAAAAACGGNN
Run BLAST on NCBI

transcript from alignment at scaffold_222:490262..500060+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052927 ID=TCONS_00052927|Name=TCONS_00052927|organism=Clytia hemisphaerica|type=transcript|length=9799bp|location=Sequence derived from alignment at scaffold_222:490262..500060+ (Clytia hemisphaerica)
CGGGTGAGCACAAAAATCAATCGATTGGGTCGGTGCCGTAATATTTGCTG
ATGTAAACAGAAGATCGAAAGTGAATCCAAGATGGCGgcttcaaaacaac
aaaatgagaTAGAATCGATGAATTTTAACCTTTTTGAAGACCATTCACGA
GAAGTATTCCAAAAGTTTCAGTCTTTAAGGGATGACAAAACATTATGTGA
TGTCAAAATGATTGTTGGAAATCGCGAAATACTTGCACACAAATTTCTAT
TGGCTTCTTCAGTACCCTACTTTTATTCAATGTTTTCTCACAATCTCATT
GAAAGCAGACAAGAAACAATAACACTAAAAGATATGGACCCTGATTCAGT
TAGCCAACTTATTGATTTTGTATATACCTCTAAAATTTATATTGATCAAG
AGAATGTTCAAAATCTTTTGCGAATGGCAACAATTTTGCAAATGGTGAGA
GTTCAAGAAAAATGTTGTGAATTTTTAGAACACCAACTTCACCCTTCAAA
CAGTCttggaatttttgtttttgctgaaaTGCACGGGTGTTCAGACTTGA
AGAAGAAAGCTAAGAACTATTGTGATCGTAATTTTATTAAAgttgtaaaa
gaatatgagttCTTATCACTCCCTTTTGAAAGAGTGAAATGGTTTTTACA
ACAGGATGGTTTATGTGTGGGAACAGAAATGGAggtaatgttttgttttt
tctgattttgtcccagacagtcaggcacatcctggcaaatgaacggggtg
agtatttgcatggggtatttgtcacccagtgtaaatgagatagtaCATCT
CAGccagtatggatttcgtgtaactaacgccgaagatcttcggcgtacaa
ctgaaacgtttttgcCGCATTGGCGTAAGgatacttacaaagattgtttg
attttcagttagcgtaaagtaataattccagctcggcgtgaatgactcca
taagccatcaatttttagctttcatttggctaaatttgctttcgctcGCT
TACACTCGCGTCAATTTATCAATcatgttggcgcatgcgcctcttttccc
atcttgcacccttattgaaaaattgaatgttggtacaaaagaaattttgc
ttggcgtgatTGGCGTGAGGCCTGCtgtacggaaaaatatcttcggcgcg
agatttcgtggaatccatactggcatctcaggctaaaagcgtgaaaatga
ataaaaatgaacttaaaactgaaaatgggaaaaaaggaagaaaactggga
acttcattttttcgttaaaagtttcttcgatcttcgaagacaaaattgac
ccatggaaaaaaatttcatctatgcagttctttgaaatgaagcaaaatat
ttccaaaccGTTTCAATTGTGTGGGGTATTCAGTGCTATTATATCACTTT
TCTTTTCGACTccttgcatttgccaccaatcgcaagtgaaaaataccccg
ttcatttgccaggatgtgcctgactgccaGATCATTTCAGTAAGGAACAT
cgaccagtcccatgtttcgaccaatcttcccaagttagagcagttgacgg
tactgtCAATGCAATTTTGCTAGACTTTTGTATTGTACGACCTACGCCTT
TGTGCGCTTTTCTATCTTTGACAAGGTGGACCATCAAATCTTGCTACATA
AGCTAAAAATCAATGGAATCAAAGGACAACTATTGAACTGGATACAATCC
TTCCTTACTGAGAGATACCAAAAAGTTTCCATAAACACGTTCCTGTCAGA
TGAAGCGAAAGTTACAAGCGGAGTTTCACAAGGCTCAGTTCTGGGCCCCC
TCTTGTTTCTGGTAATGATTAGTGACATCTACGAAAAGATTAAACATTCC
ATCCTCTCATCTTTTGCTGACGACACAAGACTTATGAAGGCAATATCTTG
CGCTGCAGATGTGAGTATGCTTCAAGATGATCTAGACATTTTCTATGACT
GGACATCTATCAACAATATGGAGctcaatggaaaaaagtttgaacacatt
gcatacggaaaaaatgaacaacTGAAAGTACACTCAGTCTACAAATCAAA
TGTACAGCAGTGAAAGACCTGGGTATCCTACTCTCAAACAACCTGTCATA
TGAAATGCACATTCAAACGATCACTGACAGAGTCAAGGGTATAAGTGCCT
GGATATACAGAACCTTCAAGTCCAGAGATAAAACAGCAATGACCACTCTT
TGGAAGACATTGGTACTTCAACATCTGGAATACTACTCCCAGCTATGGTC
TCCTACAAAGAGATCCCTGATGCAAGAACTGGAGTATCTGCAAAAATCCT
TTATAAAAGGGATCCAACTTCCACCCAATTTGAATtattgggagaagctc
aaaCACCTCAATATGTACAGTCTCGAGAGAAGACGTGAACCGAAAGATAC
CAAAGTATATATACATGGTGTATAATCAAACAACTGgtgccaaattttaa
ctatggtGAAGGGGAAGGCGGTATTTATTCATATACAAACCAACGCCTGG
GAAGAAAATGCCACCTCAAACCAGTGAATACAACAAACAAGAACATTTGG
AAGAGCTGCCTTTCAGACACCGGCCCAAGACTATTCAATGTGTTACTAAG
AAAAATATGTGACATGaccaaatgttccaaaaattccttcaaaaaacaac
ttgatcaatttctcCAAGATGTTCCCGACCAGCCACTGCTCCCTGCCTAT
CTCCCTTACAGGATGGCTGACTcgaattcaattgttgaaatggtcaaaca
tcggaccccacgggttgagtgagcagagaatttgctgaaacacatcaaag
gtaatcaaaggtAAAAGGTAGgacaattttcaacttttttgagccTACAG
GAGCGCACATCTctattgataatttttcaaccaatgaagaaagagaaaaa
ctgctgagtaaacaaaaaaatgtaaacagttaGATTTTATTCAAGTCCAC
CCCTTTGTTGATGGAAATCAAACATTGATTGTGCAGAGTGTGCGGCCAaa
tctattttaagaatttcGATCTAGCAGGCACACTCGTGCGATCCATGGAA
ACAGGCCTATAGAGCTAGACAATATAGAAAACATACCGCCAACgcaacgg
ctctaacttgggacgattgatTGAAACATGGGATTgatgatatctggcct
gtattttcacttacttttatatctctttgacaacaatttTGACTGATATC
CACCaattttatcaatcaaactttcaccatccgaatgtatttttaaagac
TATTAAAATTACATAATTTAAATAAgtaattgacaatttaatcACACACA
CGCTGCTCACATCTTGGcgcttttttttgttttgtgttattttttctctt
ctggagagagacttttttacaggATACACAATTGATTGACATGTCAAAAT
TACCAAGTGTCAAtaacagatctcacaattttcTGTGGAAGAACAGactt
tttggatatttttagtGAACCATTGACTTCATTTTATGCGCATTTTATCC
CTTATCTTCAGTCCTAAATCTGTGGttctaattttgaattatttttgtca
acaCCTATCCAAAATCTAGAACTCAAAGCTTAAATCATTCGGAATCTCTC
TACTCACTaagccttataaaccttttaagatgttttatatttatttttag
taaataaatcttgtttttatatgcaatttttaattttaagtttattttta
agacagatacatatattttttattactaTTTATTTAActtatatttatat
tattttctgGATAATATTTGTGAGAATAGTTTTTGTAATTAACCTCCTGT
AAATTAtcgaatagaaatagaaaaatatatctgAGTTCAGGCGCTTGTAC
GAATTTGCGCAATTGCATTTAGGCGTTTCTCATTGCAAAGATTTGTTCCT
TTTGCGGTGTGAAAGCCTACCTGGTGAGAGTAGCTTATTCACATTATTTG
CTATCTATGATTCGCCATTATGTTGAAATTAATGACTTGGGAGGTTTGGT
GACACCTACGTCATATTTTACTCTTTATACTGaaaaaattattactttta
aaggtACTAGAATCGGTATTACGATGGATCAACCATGACACAGGGGAACG
GAAAGGTCATCTAGTTGACTTGCTTGGTCTCGTAAGACTTCATCTTTTAC
CAAAATCTCATTTACAAACATTGGTTACAGACAATGTTTCAATACAAAAT
GGGGAAGGAGCTTTGGATTTAATCACTGATATCATCCAGGTAGGGATCAA
ATACTGTGAACTTTAAAATAATTATTAtggtttatttctttctttgacTA
AGCAATCTGtactttcttttttgatttattcTTCTTGCTTGTAACTATTA
ACTAAGAAACAGAAACTTTTCAAATTAGGATATACAGAATATGGTTAAAT
AGATATTTGTCTACAATTTTTAATTTAACATAGCTCCAGTCCTCAAGCCT
CTACACCTttaaatttcctcaaaatagcTGGGAgtatgaatttaaaaaaa
tttaagggGTATCATTCTTTTCAAGGGCCAAGGGGTACCCATGATTGGAT
CCTAGGCGCCAAGGAAATCTTCAGTAAATTactgaaaaaatctaaaaata
ttttgcctgaaacGGAAATATATTTATCTAATTTAGCAAAACAAAAGTCA
GTACAAATACCAGAAATCTAGGTGGTCCCTACCAATCTCTGAGGGGAGGa
ggacttaaattttgataagTGCTATGGATGATCTGGTTGTATAATTATTC
ACAATCTGTCTTTTGGTACTTTAATGACTTTCCCTCGTTTGACGTAGACC
AAACCATACTTAAAGGCTTTAGGGTCAAAATCGGATATTACATGAGCGTT
GAAATTATTTTCCATTGGTTAATTATAACAGGACATTGACAAGAAAGTCA
TTCCAGTCACCAAACGAAAACCACTTGGTCTTGAAGTCATCTTTTGTATG
GGTGGCTACAACAAACAGTCTTATGCTTCATACGATTGCTTTAACCCAGA
TACTGGACTATGGACTCACCTTGGAGAAATGCCCAAAGCTAAGAGCGGTG
CTGGTGCagtatttttaggtaaaataatTGGTTTCTCTTTTGTTTTATAA
TCTCCATAGAAAATCTAGTAGTGTCAAAGTATCCCTAGTATAAGTACAAC
TTCAAAATTTATGTATCtatttaaaaaatcattgataaCTTCTTGGTGTG
ACAATTAATTGATCCTCAATAGAATAAACTATTTACCGTGGAAAGGAAGA
AATTTGAAGGCTTGGAGAGTTGGAGTTTTTACAGATTTATGATAAAAact
ttattcattattttcctgttttgtttttttggttcTAGGTGGTTTACTTT
ATATGGTAGGGGGTCGTACAAACTCACCACTGTTTNTTTTTTTTGTTCTA
GGTGGTTTACTTTACATGGTAGGGGGTCGTACAAACTCACCACTGTTTGA
CAAACTCGATTCTGACTCTGCCAACGTTGAAAGATACGATCCTTTTACTC
ACGAATGGACTTCTGTTGCTAAGTTAAATACACCACGCCACCGTCTTGGC
GTGGCGTCAATCGATGGCGTAATTTATGCAGTGGGTGGTAGTGATGGTTT
GATGAATCTGAACTCTGTGGAGAAATACAGTGTCGAAAGTGATTCATGGA
CATTATGTGCACCAATGACTACCCCAAGGATGGGTAATCTTATCTATTGG
TTCTGTTTCAAAATTTNattcatgatatgcaccattgcaatgtcttccgt
tccacccaatagctgattggttgaaagtgacgtattgactgattttacgt
cacttccaaccaatgagctaatggttccgtgacgtaatgtcagaagacat
tgcagtggtgcatatcatgaattggttctgtttcaaaatttgttttcaat
aaatacGTAGATGCGTGGCTGGTTGAGCAAATTATGGAATGTGAAATCCT
AATAAGGTCCTAGGGTATTTGGAAAAAGATCTAAAGAttaaactaaagtc
tattcacgataagtgtgcactcttttttcttttacctataacttttgaag
gaattcttcaatctttacaaatttggtatcgttggagagatatttgtgag
tggaacaatttgaagtaaaaaaatcttcaaaagaattctaaaaatgaaga
tgaaaatgaagaagaaaaaatgaagatcttgtagagaagtgctataactt
tcattttcactggagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNcagcagaaaacagcagaaaacagcgtttttagacgt
caattagcttataactttgtttgatatcttttgattgaatgattattttt
gagaatttttttcacagtgataacgttcgataatcaaggtttTTTACTTA
ACAGTGAAAATGATacttatagcacttttctacaacatcttcattttttt
ctttttcattttcatcttcatttttagaattattttaaagatttttttat
ttcaaattgtcccacttactaatatctttccaatgataccaaatttataa
agatttaagaattccttcaaaagttataggtaaatgaaaaaagagtgcac
acttatcgtgaatagactttagttagGTTTACTAGGCACCAAAGAGTATT
CTGGGTTTTCCAGGGGTAAAAGACAGATTTTAGTTCTTCTTTTGCATTGT
GAGCACCTAGTGGGAATGTAACCACGACCTTCTTGAGTCAAGACTGGTGT
TTTCTGAGTTGCAGGACGCACTGTAGTCATATTTTTGTGACAGTAGACAG
ACTAAACCTggatggaattttttttctgatgatttttgaaattgaaccCG
GATCGCACGCCTGCACCAAGCTATTACACTACTACACTACTTTGCCTTAA
AACGCCACTTCTTTTTTCTACATTACGCGCCAGGCgaaattcaaggaaaa
aaattctcaatgggctattcaagaaaaatttctgCCCTCTATGTTTAGGA
GCTCTTCGTTCTAAAAAGGTGACCCCCCCTggatttttcccaatttttca
ggacctcctcaacatagggggtaaagactatttctggaatagtcCAATAT
ATTTTCACAAAATAAAGGCCCATAGAATTTAGTTTTACGTTTGTTATTAT
ATTCCCTTCCAGGTGTTGGTGTAGCAGTATTAGATGGTCTTTTGTACGCT
GTTGGTGGATTCGATTCTGAGAACCGTTTACGAACAGTTGAATGTTATTG
TCCGCAAGAAAACACGTGGAAAACGATCGCTCCTTTGAACACTCCGCGAA
GTGGAGCTGGTGTGGTCGCCATGAATGGGTGAGTgtgtaatttaattttt
tggttttaagcTCTCCATATGAaagtgttaaaagtttttccgtCTCGGAT
GGATGGATGaatgggatgagctggagtttttataagatacttcactaatt
ggtcgtttgaagtaatagaaatgacgcgttctttaaaaaaagtagcaaaa
ttgtttttactacatgttaacgaccaaccagttcaaataagagcttgtaa
aaactccagcttgtcccggaTAAATGAGTGAGTGTCTGACCTAAATGAGT
TAAGTTTTACCAAAGttttgcggggacttaattCCGTGGTTCACAACCTC
TTCCATATTATCTACGACCAAAATGCAATGTCTTcacttttgttaaaaaa
aagtgtTACAAGATAACTAATTCATCGAGAATCAAAGTAAAAGATCTGAT
TACAAGGTTAAAGTTGTACGAGCAAAAACTCATTTTCGAAACTGAAACTT
AGAAATTAATCAAATTAAGAAGATTTTACTAGTTAAATTAGTTAAATTGT
ATTGGTGATAGAAGGGGAAACAGGTCTCAGGGTTTTGATTATACCTTTAT
AATTTAAAACATCTCAAAATCTTCTTCTTCAGGCATGTGTACGCACTTGG
TGGTTACAATGGAGTCGCACAGTTGAACAGTGTTGAAAGATATTGCCCGC
AAGAAGATCACTGGTGTCTCGTGACGCCTATGAATGAACATCGAAGTGCT
CTCAGTGTGGCTGTCATCAAGAATAAACTGTTTGCTCTAGGTGAGATAAT
TACCCtattaagtaagtaagtttgcgaatGCAGTCGAAGGCGACTcaaag
gctcccttttctctacTCTAGCTGGCTACCCGAAGTTATGGGATTTCTCC
ACTTAACCTGGACCCgtctctttaattgctgagcatcaagcagagaggca
tcaagtactatTCTGGGAATcgttggtatgacccggctggggattgaacc
cacaaccttgtgcaTCGTAGCtagatgctctaccttcatgctacggtcgc
taTTACCCTCTTAGAGACTTTATGTATCTTCACTTTGATAACGGAGAAAA
ACTGTATCCttactttataaaaatttgGTAAACCAGCGCTTTTaaccttt
ttgatttttgtaggtTAAAAAGGCGGGCTGTCGCAATTATTGTCCCCTAA
ATCTTGACCGTTTAAGTTcttgttcgttttttttctttgatggCAGCTTG
AAGACTGGTATTTTTCGAAATGGTTTAAGCAGCTCTTCATTCTCTTCTCG
TACACCATTATTTGTCGCGGAACTTTCCTTATAATTTGATTTACATCCCC
GAAGAAAACACTTTTTACCCATACATTCGACCCAAAAAGAGACCTGACTT
GCGAAAAGAAAGTTTAAAGTGGGCGGCTTTCGTTGAAAAAACTGACGCAA
TACAAGGGAATCaaattgacgtcaatgcaatggcTTCAATATTATTAGGA
TACCCAGTTTTTGACATCAATGCACGCTTGCTAGGCCTgcagatttagaa
cgccatgtcCCCAGTCTTTAAATAACGTAAAATCGATGATACAACTCCGA
GAAAGTTTCGTAATGAAGATCTATCTCTGTCACGTTTAGAATCGGACCCA
TTAATTtctttactctcgggtacctaatagccggggaggttggaataagc
agggggggttgaaataaaaatgtcctgggtggaaaattttcgaaaaggag
gctaatacagcagaattagggcaaaagagggaactttcaaagaAACTTCC
CAacaatcaataagcggggggggctggaataagaatgtcctgggcggaaa
attttcgaaaaattaattagcgccccccccccggctattaggtacccgag
agtacttttCTAGGGTAGGTTAATGAGCAGTAAAAAAGAGTTTCCTGAAA
ATACATTTCTCTTTAGAGGCCACTTGCTACTAAAGTCTCTACTAAAGTCT
CTGGgcattttaaagtttaaagagTCTTAGTATTGGTAAACGTAAAAGCT
TTTCTTTGGAATTAGTTcttgttttttaatttatagGTGGTTATGATGGT
GAGAAATTTTTGGACGGTGTCGAATCATACGATCAAGATAGTGGAGAATG
GAGGCTAGTCAAACCGTTACCGGATCCACGGAGTGGGGCTGGTGTCACAG
TCGGTACCATACCTCTACCGTGAAAGATGCGTTGGTATAAAATGATtccg
tgtgacgtcattttcatccACGATCAGCCAGTTACCTAAAAAAACGGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033436XLOC_033436Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052927-exon-scaffold_222-1491911889:490262..490945TCONS_00052927-exon-scaffold_222-1491911889:490262..490945Clytia hemisphaericaexon
TCONS_00052927-exon-scaffold_222-1510915933:490262..490945TCONS_00052927-exon-scaffold_222-1510915933:490262..490945Clytia hemisphaericaexon
TCONS_00052927-exon-scaffold_222-1575043694:490262..490945TCONS_00052927-exon-scaffold_222-1575043694:490262..490945Clytia hemisphaericaexon
TCONS_00052927-exon-scaffold_222-1491911889:494315..494500TCONS_00052927-exon-scaffold_222-1491911889:494315..494500Clytia hemisphaericaexon
TCONS_00052927-exon-scaffold_222-1510915933:494315..494500TCONS_00052927-exon-scaffold_222-1510915933:494315..494500Clytia hemisphaericaexon
TCONS_00052927-exon-scaffold_222-1575043694:494315..494500TCONS_00052927-exon-scaffold_222-1575043694:494315..494500Clytia hemisphaericaexon
TCONS_00052927-exon-scaffold_222-1491911889:495143..495329TCONS_00052927-exon-scaffold_222-1491911889:495143..495329Clytia hemisphaericaexon
TCONS_00052927-exon-scaffold_222-1510915933:495143..495329TCONS_00052927-exon-scaffold_222-1510915933:495143..495329Clytia hemisphaericaexon
TCONS_00052927-exon-scaffold_222-1575043694:495143..495329TCONS_00052927-exon-scaffold_222-1575043694:495143..495329Clytia hemisphaericaexon
TCONS_00052927-exon-scaffold_222-1491911889:495663..495944TCONS_00052927-exon-scaffold_222-1491911889:495663..495944Clytia hemisphaericaexon
TCONS_00052927-exon-scaffold_222-1510915933:495663..495944TCONS_00052927-exon-scaffold_222-1510915933:495663..495944Clytia hemisphaericaexon
TCONS_00052927-exon-scaffold_222-1575043694:495663..495944TCONS_00052927-exon-scaffold_222-1575043694:495663..495944Clytia hemisphaericaexon
TCONS_00052927-exon-scaffold_222-1491911889:497624..497789TCONS_00052927-exon-scaffold_222-1491911889:497624..497789Clytia hemisphaericaexon
TCONS_00052927-exon-scaffold_222-1510915933:497624..497789TCONS_00052927-exon-scaffold_222-1510915933:497624..497789Clytia hemisphaericaexon
TCONS_00052927-exon-scaffold_222-1575043694:497624..497789TCONS_00052927-exon-scaffold_222-1575043694:497624..497789Clytia hemisphaericaexon
TCONS_00052927-exon-scaffold_222-1491911889:498394..498551TCONS_00052927-exon-scaffold_222-1491911889:498394..498551Clytia hemisphaericaexon
TCONS_00052927-exon-scaffold_222-1510915933:498394..498551TCONS_00052927-exon-scaffold_222-1510915933:498394..498551Clytia hemisphaericaexon
TCONS_00052927-exon-scaffold_222-1575043694:498394..498551TCONS_00052927-exon-scaffold_222-1575043694:498394..498551Clytia hemisphaericaexon
TCONS_00052927-exon-scaffold_222-1491911889:499848..500060TCONS_00052927-exon-scaffold_222-1491911889:499848..500060Clytia hemisphaericaexon
TCONS_00052927-exon-scaffold_222-1510915933:499848..500060TCONS_00052927-exon-scaffold_222-1510915933:499848..500060Clytia hemisphaericaexon
TCONS_00052927-exon-scaffold_222-1575043694:499848..500060TCONS_00052927-exon-scaffold_222-1575043694:499848..500060Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_222supercontigscaffold_222:490262..500060 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.65473	3.46808	2.07058	1.87142	12.8116	8.01496	5.42978	8.79255	3.68873	2.64132	2.86002	3.29596	1.46621	2.5829	2.54648	3.86668	5.07071	4.84982	2.55162	2.70187	4.90028	1.24026	2.61997	2.7606	2.55297	3.95811	1.98122	1.64817	1.42164	0.522438
Blast
[Close]
BLAST of TCONS_00052927 vs. Swiss-Prot (Human)
Match: KEAP1 (Kelch-like ECH-associated protein 1 OS=Homo sapiens GN=KEAP1 PE=1 SV=2)

HSP 1 Score: 412.535 bits (1059), Expect = 6.517e-135
Identity = 228/583 (39.11%), Postives = 340/583 (58.32%), Query Frame = 1 
Query:   70 SESKMAASKQQNEIESMNFNLFEDHSREVFQKFQSLRDDKTLCDVKMIVGNR-----EILAHKFLLASSVPYFYSMFSHNLIESRQETITLKDMDPDSVSQLIDFVYTSKIYIDQENVQNLLRMATILQMVRVQEKCCEFLEHQLHPSNSLGIFVFAEMHGCSDLKKKAKNYCDRNFIKVVKEYEFLSLPFERVKWFLQQDGLCVGTEMEVLESVLRWINHDTGERKXXXXXXXXXXXXXXXPKSHLQTLVTDNVSIQNGEGAX----XXXXXXXXXXXKKVIPVTKRKPLGLEVIFCMGGYNKQSYASYDCFNPDTGLWTHLGEMPKAKSGAGAVFLGGLLYMVGGRTNSPLFDKLDSDSANVERYDPFTHEWTSVAKLNTPRHRLGVASIDGVIYAVGGSDGLMNLNSVEKYSVESDSWTLCAPMTTPRMGVGVAVLDGLLYAVGGFDSENRLRTVECYCPQENTWKTIAPLNTPRSGAGVVAMNGHVYALGGYNGVAQLNSVERYCPQEDHWCLVTPMNEHRSALSVAVIKNKLFALGGYDGEKFLDGVESYDQDSGEWRLVKPLPDPRSGAGVTVGTIP 1791
            +E K   +  Q+   + ++ L EDH+++ F     LR  + LCDV + V  +     + +AHK +LASS P F +MF++ L E   E ++++ + P  + +LI+F YT+ I + ++ V +++  A + Q+  V   C +FL  QL PSN++GI  FAE  GC +L ++A+ Y   +F +V K+ EF +L   ++   + +D L V  E EV  + + W+ +D  +R+ ++  LL  VR H L  + LQ  +     +Q+          +  ++      +V+P   R P    +I+  GGY +QS +  + +NP  G W  L ++   +SG     +GGLLY VGGR NSP     ++DS+ ++ Y+P T++W+  A ++ PR+R+GV  IDG IYAVGGS G ++ NSVE+Y  E D W L APM T R+GVGVAVL+ LLYAVGGFD  NRL + ECY P+ N W+ I  +NT RSGAGV  ++  +YA GGY+G  QLNSVERY  + + W  V PM   RSAL + V + +++ LGGYDG  FLD VE YD D+  W  V  +   RSG GV V   P
Sbjct:   36 TECKAEVTPSQHGNRTFSYTL-EDHTKQAFGIMNELRLSQQLCDVTLQVKYQDAPAAQFMAHKVVLASSSPVFKAMFTNGLREQGMEVVSIEGIHPKVMERLIEFAYTASISMGEKCVLHVMNGAVMYQIDSVVRACSDFLVQQLDPSNAIGIANFAEQIGCVELHQRAREYIYMHFGEVAKQEEFFNLSHCQLVTLISRDDLNVRCESEVFHACINWVKYDCEQRRFYVQALLRAVRCHSLTPNFLQMQLQKCEILQSDSRCKDYLVKIFEELTLHKPTQVMPC--RAPKVGRLIYTAGGYFRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSP---DGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAVTMEP 612
The following BLAST results are available for this feature:
BLAST of TCONS_00052927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KEAP16.517e-13539.11Kelch-like ECH-associated protein 1 OS=Homo sapien... [more]
back to top