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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052913 ID=TCONS_00052913|Name=TCONS_00052913|organism=Clytia hemisphaerica|type=transcript|length=2282bp
TGAAAAATAACTCAAAATcagaaattgataaaagtgCCAAACAagaaatt
tcctaaaaaatacTGGTAGTcagtctgaaaaaaaaatcaactggAAACCC
TGGGTACTATGAAAGACGTCTCTTACGCATGTACAGAACCAGAAGAACGT
GAAGAACTTCTCAACCATAAAACCATGGCAACCAGCCCTGTAAAAAATAA
TACtgaaaccacaagtgatttggAAGGTAGAAATGATCTCGAAAAGTCTC
CATCTGAATCATTAACGATAGAAATACCAATAGAGGTacaaaataataac
aatgaCGTCAAAACACCAAATGAGGAATTGGCGCCCAATGACATTGACCC
AAACATGCAACCTTCGACGTCTAGAGACTGTATCGTTGATATAAAACGTA
CCAATAGTGTGGAGGCTAACTTGGAATCAAAGTATTGTTTTGAGACTGTA
TCCTTGTGTGAACCGTGTTGTCGAGTATGCCAGTGTAATGGTGATGAAGA
GATTTTAATAAGTCCGTGTTTATGTTCAGGCTCCGTGAAATGGATACACG
AAAGTTGTTTGATACAATGGATGAAAAGCTCGTTGAAAGATTCATGTGAA
CTATGCACCAAAAAGATTAAAATCACCAAAAGAAAGAAGCCGTTTACTAA
GtgGAAACTTCCATCTCAACGGCCGACACCTGTCTTATGGGTCCTCGTGT
TCGTTACAGCAATAGCTTTGAATCTTGCTTCCGTTGTCAAGGATGCTTCA
AAACATTGTGCAACAACGCCATGTCTTGTCTTCTATGCAGTCGGTATCAT
CGGTGTTATATTAGGGACATTATTTTTAATGTATTGGAGTAAGAGAGCTA
AGGTGTTTATTAGTCATTGGGTCGAGCTAAATGAGGAATGGGTTATTGTC
GTTGATAACGAAGACCAGAAACTTAAAACTGGCTCTGAATGGTCGGCGAA
TTGCGACTTGAGAAAAGGTCCAGATGGGAAATCAAATTCCTGTAGTGTGA
CTATTAATACTTAAATGGTTTTGATGGAGACTAAAAAAGTTTGGCGAATC
GTGTAACTCGCACTCTAATAGATTGGAAACTGTTGAAACATTttcacaga
aaaaaaaactcaccgTGACTTTTATGGTTGATTTACTGATATATTATATA
AAACACTACATATAGAGCTATTTTGTCCCTGGCTGAATCAAATTAGAAGA
CCATAGTTCAGTACCGGCAATTTGAACAACCAATCCCATTTTCTAGGCCT
CCTCGATTACAGTTCTCTATGTTGAATTCACCAAAAAATTAACGTTGTTT
TTTCAACAGAACATTTTTGTGTATAATCGTACACATTTATTCCAGCTGGT
acaaaacgtcaaaacaacgtctatctaacgttcataacgtcctaATAACG
TTATACGAACGTTGAAACAAAGTTGTGAGCTAGCTGGTTGTTGGTAGAAC
ATAAAGTTGAAAGTTGGTCAAACTTAACAAAATATATGAGTAAGAGTTTT
TAATCCGGTGTGAATATATACTATAAAGTACTTCTACTTTAACAAGATGG
TACTATATCTCGTGTTTTtagttttgaatgaaaattaaaaatgtaattTA
TGATCCTCCATAGCTCCTTTAAACCTTTAAAGGGCATCTCGTGTTTTTGA
ATCTGGTGGGCTTTGTTATCACATTGGGCTCttcaagaaaatatttgtaC
ATGGGGGCGGTGGATTTATTGGATATATTGTCCggagggtagtgaaaaat
ctacaaagttTGCCTTCATTATGGGGGAAACTTTCTCTGTTTATGAATGT
CtgggggggtcaactgatgcttttcCGGAgggtaagattttttttctggg
GGGTCATAATTCACAATATCTGGAggataaatttccaaaaaatgctAGAT
CCTCATAAACCCTTCccctggaagagcccatttaaTTACTTCACCAAATG
CAACCCACAGAGTAAATGAGGATTGGTACTGGATGAGGATTGGTCCTGGC
TATCAACTACCCCAAATCAGGGATATGATGTAGTAGTTTTACTGTAGTCT
ATTACATCATTTTTCTGCGCAAACAGATCTCCTGGATGAAatttattctg
aaaattttcgCAACAAAGTTGGAAAGATTGAACTAAGAttaaaatggttg
aaaaaaAGATCTAACTATAAGCCTCCGTTTCAACTCCTTCTTTTAATCCC
TTGTTGAATTAAATGTCTCCTTTATTTTGTATAAACGAAATTATATATCA
TTTAATAGATCATATAACATACAATttataaa Run BLAST on NCBI protein sequence of TCONS_00052913-protein >TCONS_00052913-protein ID=TCONS_00052913-protein|Name=TCONS_00052913-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
MKDVSYACTEPEEREELLNHKTMATSPVKNNTETTSDLEGRNDLEKSPSE
SLTIEIPIEVQNNNNDVKTPNEELAPNDIDPNMQPSTSRDCIVDIKRTNS
VEANLESKYCFETVSLCEPCCRVCQCNGDEEILISPCLCSGSVKWIHESC
LIQWMKSSLKDSCELCTKKIKITKRKKPFTKWKLPSQRPTPVLWVLVFVT
AIALNLASVVKDASKHCATTPCLVFYAVGIIGVILGTLFLMYWSKRAKVF
ISHWVELNEEWVIVVDNEDQKLKTGSEWSANCDLRKGPDGKSNSCSVTIN
T Run BLAST on NCBI transcript from alignment at scaffold_222:337687..340715+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052913 ID=TCONS_00052913|Name=TCONS_00052913|organism=Clytia hemisphaerica|type=transcript|length=3029bp|location=Sequence derived from alignment at scaffold_222:337687..340715+ (Clytia hemisphaerica)
TGAAAAATAACTCAAAATcagaaattgataaaagtgCCAAACAagaaatt
tcctaaaaaatacTGGTAGTcagtctgaaaaaaaaatcaactggAAACCC
TGGGTACTATGAAAGACGTCTCTTACGCATGTACAGAACCAGAAGAACGT
GAAGAACTTCTCAACCATAAAACCATGGCAACCAGCCCTGTAAAAAATAA
TACtgaaaccacaagtgatttggAAGGTAGAAATGATCTCGAAAAGTCTC
CATCTGAATCATTAACGATAGAAATACCAATAGAGGTacaaaataataac
aatgaCGTCAAAACACCAAATGAGGAATTGGCGCCCAATGACATTGACCC
AAACATGCAACCTTCGACGTCTAGAGACTGTATCGTTGATATAAACCGTA
CCAACNTGACTCAAACATGCAACCTTCGACGTCTAGAGACTGTATCGTTG
ATATAAAACGTACCAATAGTGTGGAGGCTAACTTGGAATCAAAGTATTGT
TTTGAGACTGTATCCTTGTGTGAACCGTGTTGTCGAGTATGCCAGTGTAA
TGGTGATGAAGAGATTTTAATAAGTCCGTGTTTATGTTCAGGCTCCGTGA
AATGGATACACGAAAGTTGTTTGATACAATGGATGAAAAGCTCGTTGAAA
GATTCATGTGAACTATGCACCAAAAAGATTAAAATCACCAAAAGAAAGAA
GCCGTTTACTAAGGTACATATGATTGTTTTGACTGTTTAGTTTAGTAATG
AAATTAAACATTAGCCttgttaactaagcccgtattcacaaggctagggc
aaacttttttccaaaattcacgcattcacgcaatgtttttttaatttttc
acgcaatttttttgttCACACAAAGCTTTCCGATTCACGCATCCACGcag
tttttcttacttttcacgcattcacgcaagtaaAAAAGCCTATTCACGCA
AACTGCTGGGGGCCCATTTaagaattttaagtttgccttggaatacttgg
aatagttattcagtcacaatttaccatcagatttatgtAACTGAATTAGA
CTAGCTTAGATTTTTCGGTTAGAATAGAGAGTATAACTTAAAAAAAGCAT
ACCAAAATTTAGGTGAATAAGAAACACTTTTCGCTTAGACCACCACCCTC
CTCCCTGGGAATTTTTCTCggtttaccccctggaaattttagtccacccc
tgtatggatataaaatggaatggctcaATGAGTCACAATACTATCATTTC
AAGTCCAACaatgtcttttttgagagaaaaaggaACCCATCGATTTCAGT
GAGACAAAGGTGTTCCATATGAGAAACTCTGAATTGATTTTCGTGGGCCC
TTGTGTTGTGAGTTTATCTTAATTTCTCCattcttttttacattttagtg
GAAACTTCCATCTCAACGGCCGACACCTGTCTTATGGGTCCTCGTGTTCG
TTACAGCAATAGCTTTGAATCTTGCTTCCGTTGTCAAGGATGCTTCAAAA
CATTGTGCAACAACGCCATGTCTTGTCTTCTATGCAGTCGGTATCATCGG
TGTTATATTAGGGACATTATTTTTAATGTATTGGAGTAAGAGAGCTAAGG
TGTTTATTAGTCATTGGGTCGAGCTAAATGAGGAATGGGTTATTGTCGTT
GATAACGAAGACCAGAAACTTAAAACTGGCTCTGAATGGTCGGCGAATTG
CGACTTGAGAAAAGGTCCAGATGGGAAATCAAATTCCTGTAGTGTGACTA
TTAATACTTAAATGGTTTTGATGGAGACTAAAAAAGTTTGGCGAATCGTG
TAACTCGCACTCTAATAGATTGGAAACTGTTGAAACATTttcacagaaaa
aaaaactcaccgTGACTTTTATGGTTGATTTACTGATATATTATATAAAA
CACTACATATAGAGCTATTTTGTCCCTGGCTGAATCAAATTAGAAGACCA
TAGTTCAGTACCGGCAATTTGAACAACCAATCCCATTTTCTAGGCCTCCT
CGATTACAGTTCTCTATGTTGAATTCACCAAAAAATTAACGTTGTTTTTT
CAACAGAACATTTTTGTGTATAATCGTACACATTTATTCCAGCTGGTaca
aaacgtcaaaacaacgtctatctaacgttcataacgtcctaATAACGTTA
TACGAACGTTGAAACAAAGTTGTGAGCTAGCTGGTTGTTGGTAGAACATA
AAGTTGAAAGTTGGTCAAACTTAACAAAATATATGAGTAAGAGTTTTTAA
TCCGGTGTGAATATATACTATAAAGTACTTCTACTTTAACAAGATGGTAC
TATATCTCGTGTTTTtagttttgaatgaaaattaaaaatgtaattTATGA
TCCTCCATAGCTCCTTTAAACCTTTAAAGGGCATCTCGTGTTTTTGAATC
TGGTGGGCTTTGTTATCACATTGGGCTCttcaagaaaatatttgtaCATG
GGGGCGGTGGATTTATTGGATATATTGTCCggagggtagtgaaaaatcta
caaagttTGCCTTCATTATGGGGGAAACTTTCTCTGTTTATGAATGTCtg
ggggggtcaactgatgcttttcCGGAgggtaagattttttttctgggGGG
TCATAATTCACAATATCTGGAggataaatttccaaaaaatgctAGATCCT
CATAAACCCTTCccctggaagagcccatttaaTTACTTCACCAAATGCAA
CCCACAGAGTAAATGAGGATTGGTACTGGATGAGGATTGGTCCTGGCTAT
CAACTACCCCAAATCAGGGATATGATGTAGTAGTTTTACTGTAGTCTATT
ACATCATTTTTCTGCGCAAACAGATCTCCTGGATGAAatttattctgaaa
attttcgCAACAAAGTTGGAAAGATTGAACTAAGAttaaaatggttgaaa
aaaAGATCTAACTATAAGCCTCCGTTTCAACTCCTTCTTTTAATCCCTTG
TTGAATTAAATGTCTCCTTTATTTTGTATAAACGAAATTATATATCATTT
AATAGATCATATAACATACAATttataaa Coding sequence (CDS) from alignment at scaffold_222:337687..340715+ >TCONS_00052913 ID=TCONS_00052913|Name=TCONS_00052913|organism=Clytia hemisphaerica|type=CDS|length=2718bp|location=Sequence derived from alignment at scaffold_222:337687..340715+ (Clytia hemisphaerica)
ATGAAAGACGTCTCTTACGCATGTACAGAACCAGAAGAACGTGAAGAACT
TCTCAACCATAAAACCATGGCAACCAGCCCTGTAAAAAATAATACtgaaa
ccacaagtgatttggAAGGTAGAAATGATCTCGAAAAGTCTCCATCTGAA
TCATTAACGATAGAAATACCAATAGAGGTacaaaataataacaatgaCGT
CAAAACACCAAATGAGGAATTGGCGCCCAATGACATTGACCCAAACATGC
AACCTTCGACGTCTAGAGACTGTATCGTTGATATAAAACGTACCAATAGT
GTGGAGGCTAACTTGGAATCAAAGTATTGTTTTGAGACTGTATCCTTGTG
TGAACCGTGTTGTCGAGTATGCCAGTGTAATGGTGATGAAGAGATTTTAA
TAAGTCCGTGTTTATGTTCAGGCTCCGTGAAATGGATACACGAAAGTTGT
TTGATACAATGGATGAAAAGCTCGTTGAAAGATTCATGTGAACTATGCAC
CAAAAAGATTAAAATCACCAAAAGAAAGAAGCCGTTTACTAAGtgGAAAC
TTCCATCTCAACGGCCGACACCTGTCTTATGGGTCCTCGTGTTCGTTACA
GCAATAGCTTTGAATCTTGCTTCCGTTGTCAAGGATGCTTCAAAACATTG
TGCAACAACGCCATGTCTTGTCTTCTATGCAGTCGGTATCATCGGTGTTA
TATTAGGGACATTATTTTTAATGTATTGGAGTAAGAGAGCTAAGGTGTTT
ATTAGTCATTGGGTCGAGCTAAATGAGGAATGGGTTATTGTCGTTGATAA
CGAAGACCAGAAACTTAAAACTGGCTCTGAATGGTCGGCGAATTGCGACT
TGAGAAAAGGTCCAGATGGGAAATCAAATTCCTGTAGTGTGACTATTAAT
ACTTAAATGAAAGACGTCTCTTACGCATGTACAGAACCAGAAGAACGTGA
AGAACTTCTCAACCATAAAACCATGGCAACCAGCCCTGTAAAAAATAATA
CtgaaaccacaagtgatttggAAGGTAGAAATGATCTCGAAAAGTCTCCA
TCTGAATCATTAACGATAGAAATACCAATAGAGGTacaaaataataacaa
tgaCGTCAAAACACCAAATGAGGAATTGGCGCCCAATGACATTGACCCAA
ACATGCAACCTTCGACGTCTAGAGACTGTATCGTTGATATAAAACGTACC
AATAGTGTGGAGGCTAACTTGGAATCAAAGTATTGTTTTGAGACTGTATC
CTTGTGTGAACCGTGTTGTCGAGTATGCCAGTGTAATGGTGATGAAGAGA
TTTTAATAAGTCCGTGTTTATGTTCAGGCTCCGTGAAATGGATACACGAA
AGTTGTTTGATACAATGGATGAAAAGCTCGTTGAAAGATTCATGTGAACT
ATGCACCAAAAAGATTAAAATCACCAAAAGAAAGAAGCCGTTTACTAAGt
gGAAACTTCCATCTCAACGGCCGACACCTGTCTTATGGGTCCTCGTGTTC
GTTACAGCAATAGCTTTGAATCTTGCTTCCGTTGTCAAGGATGCTTCAAA
ACATTGTGCAACAACGCCATGTCTTGTCTTCTATGCAGTCGGTATCATCG
GTGTTATATTAGGGACATTATTTTTAATGTATTGGAGTAAGAGAGCTAAG
GTGTTTATTAGTCATTGGGTCGAGCTAAATGAGGAATGGGTTATTGTCGT
TGATAACGAAGACCAGAAACTTAAAACTGGCTCTGAATGGTCGGCGAATT
GCGACTTGAGAAAAGGTCCAGATGGGAAATCAAATTCCTGTAGTGTGACT
ATTAATACTTAAATGAAAGACGTCTCTTACGCATGTACAGAACCAGAAGA
ACGTGAAGAACTTCTCAACCATAAAACCATGGCAACCAGCCCTGTAAAAA
ATAATACtgaaaccacaagtgatttggAAGGTAGAAATGATCTCGAAAAG
TCTCCATCTGAATCATTAACGATAGAAATACCAATAGAGGTacaaaataa
taacaatgaCGTCAAAACACCAAATGAGGAATTGGCGCCCAATGACATTG
ACCCAAACATGCAACCTTCGACGTCTAGAGACTGTATCGTTGATATAAAA
CGTACCAATAGTGTGGAGGCTAACTTGGAATCAAAGTATTGTTTTGAGAC
TGTATCCTTGTGTGAACCGTGTTGTCGAGTATGCCAGTGTAATGGTGATG
AAGAGATTTTAATAAGTCCGTGTTTATGTTCAGGCTCCGTGAAATGGATA
CACGAAAGTTGTTTGATACAATGGATGAAAAGCTCGTTGAAAGATTCATG
TGAACTATGCACCAAAAAGATTAAAATCACCAAAAGAAAGAAGCCGTTTA
CTAAGtgGAAACTTCCATCTCAACGGCCGACACCTGTCTTATGGGTCCTC
GTGTTCGTTACAGCAATAGCTTTGAATCTTGCTTCCGTTGTCAAGGATGC
TTCAAAACATTGTGCAACAACGCCATGTCTTGTCTTCTATGCAGTCGGTA
TCATCGGTGTTATATTAGGGACATTATTTTTAATGTATTGGAGTAAGAGA
GCTAAGGTGTTTATTAGTCATTGGGTCGAGCTAAATGAGGAATGGGTTAT
TGTCGTTGATAACGAAGACCAGAAACTTAAAACTGGCTCTGAATGGTCGG
CGAATTGCGACTTGAGAAAAGGTCCAGATGGGAAATCAAATTCCTGTAGT
GTGACTATTAATACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052913-exon-scaffold_222-1491911889:337687..338040 | TCONS_00052913-exon-scaffold_222-1491911889:337687..338040 | Clytia hemisphaerica | exon |
| TCONS_00052913-exon-scaffold_222-1510915933:337687..338040 | TCONS_00052913-exon-scaffold_222-1510915933:337687..338040 | Clytia hemisphaerica | exon |
| TCONS_00052913-exon-scaffold_222-1575043694:337687..338040 | TCONS_00052913-exon-scaffold_222-1575043694:337687..338040 | Clytia hemisphaerica | exon |
| TCONS_00052913-exon-scaffold_222-1491911889:338103..338399 | TCONS_00052913-exon-scaffold_222-1491911889:338103..338399 | Clytia hemisphaerica | exon |
| TCONS_00052913-exon-scaffold_222-1510915933:338103..338399 | TCONS_00052913-exon-scaffold_222-1510915933:338103..338399 | Clytia hemisphaerica | exon |
| TCONS_00052913-exon-scaffold_222-1575043694:338103..338399 | TCONS_00052913-exon-scaffold_222-1575043694:338103..338399 | Clytia hemisphaerica | exon |
| TCONS_00052913-exon-scaffold_222-1491911889:339085..340715 | TCONS_00052913-exon-scaffold_222-1491911889:339085..340715 | Clytia hemisphaerica | exon |
| TCONS_00052913-exon-scaffold_222-1510915933:339085..340715 | TCONS_00052913-exon-scaffold_222-1510915933:339085..340715 | Clytia hemisphaerica | exon |
| TCONS_00052913-exon-scaffold_222-1575043694:339085..340715 | TCONS_00052913-exon-scaffold_222-1575043694:339085..340715 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_222 | supercontig | scaffold_222:337687..340715 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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