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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052913 ID=TCONS_00052913|Name=TCONS_00052913|organism=Clytia hemisphaerica|type=transcript|length=2282bp TGAAAAATAACTCAAAATcagaaattgataaaagtgCCAAACAagaaatt tcctaaaaaatacTGGTAGTcagtctgaaaaaaaaatcaactggAAACCC TGGGTACTATGAAAGACGTCTCTTACGCATGTACAGAACCAGAAGAACGT GAAGAACTTCTCAACCATAAAACCATGGCAACCAGCCCTGTAAAAAATAA TACtgaaaccacaagtgatttggAAGGTAGAAATGATCTCGAAAAGTCTC CATCTGAATCATTAACGATAGAAATACCAATAGAGGTacaaaataataac aatgaCGTCAAAACACCAAATGAGGAATTGGCGCCCAATGACATTGACCC AAACATGCAACCTTCGACGTCTAGAGACTGTATCGTTGATATAAAACGTA CCAATAGTGTGGAGGCTAACTTGGAATCAAAGTATTGTTTTGAGACTGTA TCCTTGTGTGAACCGTGTTGTCGAGTATGCCAGTGTAATGGTGATGAAGA GATTTTAATAAGTCCGTGTTTATGTTCAGGCTCCGTGAAATGGATACACG AAAGTTGTTTGATACAATGGATGAAAAGCTCGTTGAAAGATTCATGTGAA CTATGCACCAAAAAGATTAAAATCACCAAAAGAAAGAAGCCGTTTACTAA GtgGAAACTTCCATCTCAACGGCCGACACCTGTCTTATGGGTCCTCGTGT TCGTTACAGCAATAGCTTTGAATCTTGCTTCCGTTGTCAAGGATGCTTCA AAACATTGTGCAACAACGCCATGTCTTGTCTTCTATGCAGTCGGTATCAT CGGTGTTATATTAGGGACATTATTTTTAATGTATTGGAGTAAGAGAGCTA AGGTGTTTATTAGTCATTGGGTCGAGCTAAATGAGGAATGGGTTATTGTC GTTGATAACGAAGACCAGAAACTTAAAACTGGCTCTGAATGGTCGGCGAA TTGCGACTTGAGAAAAGGTCCAGATGGGAAATCAAATTCCTGTAGTGTGA CTATTAATACTTAAATGGTTTTGATGGAGACTAAAAAAGTTTGGCGAATC GTGTAACTCGCACTCTAATAGATTGGAAACTGTTGAAACATTttcacaga aaaaaaaactcaccgTGACTTTTATGGTTGATTTACTGATATATTATATA AAACACTACATATAGAGCTATTTTGTCCCTGGCTGAATCAAATTAGAAGA CCATAGTTCAGTACCGGCAATTTGAACAACCAATCCCATTTTCTAGGCCT CCTCGATTACAGTTCTCTATGTTGAATTCACCAAAAAATTAACGTTGTTT TTTCAACAGAACATTTTTGTGTATAATCGTACACATTTATTCCAGCTGGT acaaaacgtcaaaacaacgtctatctaacgttcataacgtcctaATAACG TTATACGAACGTTGAAACAAAGTTGTGAGCTAGCTGGTTGTTGGTAGAAC ATAAAGTTGAAAGTTGGTCAAACTTAACAAAATATATGAGTAAGAGTTTT TAATCCGGTGTGAATATATACTATAAAGTACTTCTACTTTAACAAGATGG TACTATATCTCGTGTTTTtagttttgaatgaaaattaaaaatgtaattTA TGATCCTCCATAGCTCCTTTAAACCTTTAAAGGGCATCTCGTGTTTTTGA ATCTGGTGGGCTTTGTTATCACATTGGGCTCttcaagaaaatatttgtaC ATGGGGGCGGTGGATTTATTGGATATATTGTCCggagggtagtgaaaaat ctacaaagttTGCCTTCATTATGGGGGAAACTTTCTCTGTTTATGAATGT CtgggggggtcaactgatgcttttcCGGAgggtaagattttttttctggg GGGTCATAATTCACAATATCTGGAggataaatttccaaaaaatgctAGAT CCTCATAAACCCTTCccctggaagagcccatttaaTTACTTCACCAAATG CAACCCACAGAGTAAATGAGGATTGGTACTGGATGAGGATTGGTCCTGGC TATCAACTACCCCAAATCAGGGATATGATGTAGTAGTTTTACTGTAGTCT ATTACATCATTTTTCTGCGCAAACAGATCTCCTGGATGAAatttattctg aaaattttcgCAACAAAGTTGGAAAGATTGAACTAAGAttaaaatggttg aaaaaaAGATCTAACTATAAGCCTCCGTTTCAACTCCTTCTTTTAATCCC TTGTTGAATTAAATGTCTCCTTTATTTTGTATAAACGAAATTATATATCA TTTAATAGATCATATAACATACAATttataaa Run BLAST on NCBI protein sequence of TCONS_00052913-protein >TCONS_00052913-protein ID=TCONS_00052913-protein|Name=TCONS_00052913-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
MKDVSYACTEPEEREELLNHKTMATSPVKNNTETTSDLEGRNDLEKSPSE SLTIEIPIEVQNNNNDVKTPNEELAPNDIDPNMQPSTSRDCIVDIKRTNS VEANLESKYCFETVSLCEPCCRVCQCNGDEEILISPCLCSGSVKWIHESC LIQWMKSSLKDSCELCTKKIKITKRKKPFTKWKLPSQRPTPVLWVLVFVT AIALNLASVVKDASKHCATTPCLVFYAVGIIGVILGTLFLMYWSKRAKVF ISHWVELNEEWVIVVDNEDQKLKTGSEWSANCDLRKGPDGKSNSCSVTIN T Run BLAST on NCBI transcript from alignment at scaffold_222:337687..340715+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052913 ID=TCONS_00052913|Name=TCONS_00052913|organism=Clytia hemisphaerica|type=transcript|length=3029bp|location=Sequence derived from alignment at scaffold_222:337687..340715+ (Clytia hemisphaerica) TGAAAAATAACTCAAAATcagaaattgataaaagtgCCAAACAagaaatt
tcctaaaaaatacTGGTAGTcagtctgaaaaaaaaatcaactggAAACCC
TGGGTACTATGAAAGACGTCTCTTACGCATGTACAGAACCAGAAGAACGT
GAAGAACTTCTCAACCATAAAACCATGGCAACCAGCCCTGTAAAAAATAA
TACtgaaaccacaagtgatttggAAGGTAGAAATGATCTCGAAAAGTCTC
CATCTGAATCATTAACGATAGAAATACCAATAGAGGTacaaaataataac
aatgaCGTCAAAACACCAAATGAGGAATTGGCGCCCAATGACATTGACCC
AAACATGCAACCTTCGACGTCTAGAGACTGTATCGTTGATATAAACCGTA
CCAACNTGACTCAAACATGCAACCTTCGACGTCTAGAGACTGTATCGTTG
ATATAAAACGTACCAATAGTGTGGAGGCTAACTTGGAATCAAAGTATTGT
TTTGAGACTGTATCCTTGTGTGAACCGTGTTGTCGAGTATGCCAGTGTAA
TGGTGATGAAGAGATTTTAATAAGTCCGTGTTTATGTTCAGGCTCCGTGA
AATGGATACACGAAAGTTGTTTGATACAATGGATGAAAAGCTCGTTGAAA
GATTCATGTGAACTATGCACCAAAAAGATTAAAATCACCAAAAGAAAGAA
GCCGTTTACTAAGGTACATATGATTGTTTTGACTGTTTAGTTTAGTAATG
AAATTAAACATTAGCCttgttaactaagcccgtattcacaaggctagggc
aaacttttttccaaaattcacgcattcacgcaatgtttttttaatttttc
acgcaatttttttgttCACACAAAGCTTTCCGATTCACGCATCCACGcag
tttttcttacttttcacgcattcacgcaagtaaAAAAGCCTATTCACGCA
AACTGCTGGGGGCCCATTTaagaattttaagtttgccttggaatacttgg
aatagttattcagtcacaatttaccatcagatttatgtAACTGAATTAGA
CTAGCTTAGATTTTTCGGTTAGAATAGAGAGTATAACTTAAAAAAAGCAT
ACCAAAATTTAGGTGAATAAGAAACACTTTTCGCTTAGACCACCACCCTC
CTCCCTGGGAATTTTTCTCggtttaccccctggaaattttagtccacccc
tgtatggatataaaatggaatggctcaATGAGTCACAATACTATCATTTC
AAGTCCAACaatgtcttttttgagagaaaaaggaACCCATCGATTTCAGT
GAGACAAAGGTGTTCCATATGAGAAACTCTGAATTGATTTTCGTGGGCCC
TTGTGTTGTGAGTTTATCTTAATTTCTCCattcttttttacattttagtg
GAAACTTCCATCTCAACGGCCGACACCTGTCTTATGGGTCCTCGTGTTCG
TTACAGCAATAGCTTTGAATCTTGCTTCCGTTGTCAAGGATGCTTCAAAA
CATTGTGCAACAACGCCATGTCTTGTCTTCTATGCAGTCGGTATCATCGG
TGTTATATTAGGGACATTATTTTTAATGTATTGGAGTAAGAGAGCTAAGG
TGTTTATTAGTCATTGGGTCGAGCTAAATGAGGAATGGGTTATTGTCGTT
GATAACGAAGACCAGAAACTTAAAACTGGCTCTGAATGGTCGGCGAATTG
CGACTTGAGAAAAGGTCCAGATGGGAAATCAAATTCCTGTAGTGTGACTA
TTAATACTTAAATGGTTTTGATGGAGACTAAAAAAGTTTGGCGAATCGTG
TAACTCGCACTCTAATAGATTGGAAACTGTTGAAACATTttcacagaaaa
aaaaactcaccgTGACTTTTATGGTTGATTTACTGATATATTATATAAAA
CACTACATATAGAGCTATTTTGTCCCTGGCTGAATCAAATTAGAAGACCA
TAGTTCAGTACCGGCAATTTGAACAACCAATCCCATTTTCTAGGCCTCCT
CGATTACAGTTCTCTATGTTGAATTCACCAAAAAATTAACGTTGTTTTTT
CAACAGAACATTTTTGTGTATAATCGTACACATTTATTCCAGCTGGTaca
aaacgtcaaaacaacgtctatctaacgttcataacgtcctaATAACGTTA
TACGAACGTTGAAACAAAGTTGTGAGCTAGCTGGTTGTTGGTAGAACATA
AAGTTGAAAGTTGGTCAAACTTAACAAAATATATGAGTAAGAGTTTTTAA
TCCGGTGTGAATATATACTATAAAGTACTTCTACTTTAACAAGATGGTAC
TATATCTCGTGTTTTtagttttgaatgaaaattaaaaatgtaattTATGA
TCCTCCATAGCTCCTTTAAACCTTTAAAGGGCATCTCGTGTTTTTGAATC
TGGTGGGCTTTGTTATCACATTGGGCTCttcaagaaaatatttgtaCATG
GGGGCGGTGGATTTATTGGATATATTGTCCggagggtagtgaaaaatcta
caaagttTGCCTTCATTATGGGGGAAACTTTCTCTGTTTATGAATGTCtg
ggggggtcaactgatgcttttcCGGAgggtaagattttttttctgggGGG
TCATAATTCACAATATCTGGAggataaatttccaaaaaatgctAGATCCT
CATAAACCCTTCccctggaagagcccatttaaTTACTTCACCAAATGCAA
CCCACAGAGTAAATGAGGATTGGTACTGGATGAGGATTGGTCCTGGCTAT
CAACTACCCCAAATCAGGGATATGATGTAGTAGTTTTACTGTAGTCTATT
ACATCATTTTTCTGCGCAAACAGATCTCCTGGATGAAatttattctgaaa
attttcgCAACAAAGTTGGAAAGATTGAACTAAGAttaaaatggttgaaa
aaaAGATCTAACTATAAGCCTCCGTTTCAACTCCTTCTTTTAATCCCTTG
TTGAATTAAATGTCTCCTTTATTTTGTATAAACGAAATTATATATCATTT
AATAGATCATATAACATACAATttataaa Coding sequence (CDS) from alignment at scaffold_222:337687..340715+ >TCONS_00052913 ID=TCONS_00052913|Name=TCONS_00052913|organism=Clytia hemisphaerica|type=CDS|length=2718bp|location=Sequence derived from alignment at scaffold_222:337687..340715+ (Clytia hemisphaerica) ATGAAAGACGTCTCTTACGCATGTACAGAACCAGAAGAACGTGAAGAACT TCTCAACCATAAAACCATGGCAACCAGCCCTGTAAAAAATAATACtgaaa ccacaagtgatttggAAGGTAGAAATGATCTCGAAAAGTCTCCATCTGAA TCATTAACGATAGAAATACCAATAGAGGTacaaaataataacaatgaCGT CAAAACACCAAATGAGGAATTGGCGCCCAATGACATTGACCCAAACATGC AACCTTCGACGTCTAGAGACTGTATCGTTGATATAAAACGTACCAATAGT GTGGAGGCTAACTTGGAATCAAAGTATTGTTTTGAGACTGTATCCTTGTG TGAACCGTGTTGTCGAGTATGCCAGTGTAATGGTGATGAAGAGATTTTAA TAAGTCCGTGTTTATGTTCAGGCTCCGTGAAATGGATACACGAAAGTTGT TTGATACAATGGATGAAAAGCTCGTTGAAAGATTCATGTGAACTATGCAC CAAAAAGATTAAAATCACCAAAAGAAAGAAGCCGTTTACTAAGtgGAAAC TTCCATCTCAACGGCCGACACCTGTCTTATGGGTCCTCGTGTTCGTTACA GCAATAGCTTTGAATCTTGCTTCCGTTGTCAAGGATGCTTCAAAACATTG TGCAACAACGCCATGTCTTGTCTTCTATGCAGTCGGTATCATCGGTGTTA TATTAGGGACATTATTTTTAATGTATTGGAGTAAGAGAGCTAAGGTGTTT ATTAGTCATTGGGTCGAGCTAAATGAGGAATGGGTTATTGTCGTTGATAA CGAAGACCAGAAACTTAAAACTGGCTCTGAATGGTCGGCGAATTGCGACT TGAGAAAAGGTCCAGATGGGAAATCAAATTCCTGTAGTGTGACTATTAAT ACTTAAATGAAAGACGTCTCTTACGCATGTACAGAACCAGAAGAACGTGA AGAACTTCTCAACCATAAAACCATGGCAACCAGCCCTGTAAAAAATAATA CtgaaaccacaagtgatttggAAGGTAGAAATGATCTCGAAAAGTCTCCA TCTGAATCATTAACGATAGAAATACCAATAGAGGTacaaaataataacaa tgaCGTCAAAACACCAAATGAGGAATTGGCGCCCAATGACATTGACCCAA ACATGCAACCTTCGACGTCTAGAGACTGTATCGTTGATATAAAACGTACC AATAGTGTGGAGGCTAACTTGGAATCAAAGTATTGTTTTGAGACTGTATC CTTGTGTGAACCGTGTTGTCGAGTATGCCAGTGTAATGGTGATGAAGAGA TTTTAATAAGTCCGTGTTTATGTTCAGGCTCCGTGAAATGGATACACGAA AGTTGTTTGATACAATGGATGAAAAGCTCGTTGAAAGATTCATGTGAACT ATGCACCAAAAAGATTAAAATCACCAAAAGAAAGAAGCCGTTTACTAAGt gGAAACTTCCATCTCAACGGCCGACACCTGTCTTATGGGTCCTCGTGTTC GTTACAGCAATAGCTTTGAATCTTGCTTCCGTTGTCAAGGATGCTTCAAA ACATTGTGCAACAACGCCATGTCTTGTCTTCTATGCAGTCGGTATCATCG GTGTTATATTAGGGACATTATTTTTAATGTATTGGAGTAAGAGAGCTAAG GTGTTTATTAGTCATTGGGTCGAGCTAAATGAGGAATGGGTTATTGTCGT TGATAACGAAGACCAGAAACTTAAAACTGGCTCTGAATGGTCGGCGAATT GCGACTTGAGAAAAGGTCCAGATGGGAAATCAAATTCCTGTAGTGTGACT ATTAATACTTAAATGAAAGACGTCTCTTACGCATGTACAGAACCAGAAGA ACGTGAAGAACTTCTCAACCATAAAACCATGGCAACCAGCCCTGTAAAAA ATAATACtgaaaccacaagtgatttggAAGGTAGAAATGATCTCGAAAAG TCTCCATCTGAATCATTAACGATAGAAATACCAATAGAGGTacaaaataa taacaatgaCGTCAAAACACCAAATGAGGAATTGGCGCCCAATGACATTG ACCCAAACATGCAACCTTCGACGTCTAGAGACTGTATCGTTGATATAAAA CGTACCAATAGTGTGGAGGCTAACTTGGAATCAAAGTATTGTTTTGAGAC TGTATCCTTGTGTGAACCGTGTTGTCGAGTATGCCAGTGTAATGGTGATG AAGAGATTTTAATAAGTCCGTGTTTATGTTCAGGCTCCGTGAAATGGATA CACGAAAGTTGTTTGATACAATGGATGAAAAGCTCGTTGAAAGATTCATG TGAACTATGCACCAAAAAGATTAAAATCACCAAAAGAAAGAAGCCGTTTA CTAAGtgGAAACTTCCATCTCAACGGCCGACACCTGTCTTATGGGTCCTC GTGTTCGTTACAGCAATAGCTTTGAATCTTGCTTCCGTTGTCAAGGATGC TTCAAAACATTGTGCAACAACGCCATGTCTTGTCTTCTATGCAGTCGGTA TCATCGGTGTTATATTAGGGACATTATTTTTAATGTATTGGAGTAAGAGA GCTAAGGTGTTTATTAGTCATTGGGTCGAGCTAAATGAGGAATGGGTTAT TGTCGTTGATAACGAAGACCAGAAACTTAAAACTGGCTCTGAATGGTCGG CGAATTGCGACTTGAGAAAAGGTCCAGATGGGAAATCAAATTCCTGTAGT GTGACTATTAATACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00052913-exon-scaffold_222-1491911889:337687..338040 | TCONS_00052913-exon-scaffold_222-1491911889:337687..338040 | Clytia hemisphaerica | exon |
TCONS_00052913-exon-scaffold_222-1510915933:337687..338040 | TCONS_00052913-exon-scaffold_222-1510915933:337687..338040 | Clytia hemisphaerica | exon |
TCONS_00052913-exon-scaffold_222-1575043694:337687..338040 | TCONS_00052913-exon-scaffold_222-1575043694:337687..338040 | Clytia hemisphaerica | exon |
TCONS_00052913-exon-scaffold_222-1491911889:338103..338399 | TCONS_00052913-exon-scaffold_222-1491911889:338103..338399 | Clytia hemisphaerica | exon |
TCONS_00052913-exon-scaffold_222-1510915933:338103..338399 | TCONS_00052913-exon-scaffold_222-1510915933:338103..338399 | Clytia hemisphaerica | exon |
TCONS_00052913-exon-scaffold_222-1575043694:338103..338399 | TCONS_00052913-exon-scaffold_222-1575043694:338103..338399 | Clytia hemisphaerica | exon |
TCONS_00052913-exon-scaffold_222-1491911889:339085..340715 | TCONS_00052913-exon-scaffold_222-1491911889:339085..340715 | Clytia hemisphaerica | exon |
TCONS_00052913-exon-scaffold_222-1510915933:339085..340715 | TCONS_00052913-exon-scaffold_222-1510915933:339085..340715 | Clytia hemisphaerica | exon |
TCONS_00052913-exon-scaffold_222-1575043694:339085..340715 | TCONS_00052913-exon-scaffold_222-1575043694:339085..340715 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_222 | supercontig | scaffold_222:337687..340715 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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