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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052871 ID=TCONS_00052871|Name=TCONS_00052871|organism=Clytia hemisphaerica|type=transcript|length=2131bp
TGGAATTGATTTGAAGAATGTATCTGGGACATATTTTTGTTACGAGTTGT
TGCCTTTTTAATCTAGTTTTGTCCCAGACTTTACGACCTGGAGGTGATCC
TATGGTCATTATAGGACTTTATCATCAGTGCGACGAAAATCGAAATCTGA
ACTCCTCATCCAGTTTATGCCAAGCTGCAGTTAACTTTGCGTATcaacag
aaaaaactaaattggGAAAAGTATTTAATAAAGAATGAATTTGATCGCGT
TAACGGTTTACTTACAATAAAGGATTTCGAATATCGANGCTAAATTGGGA
AAAGTATTTAATAAAGAATTATAATCGCGTTAATGGTTTACTTACAATAA
AGGATTTCGAATATCGAGTTTTCGATTTTTGTGAATTCGAAGATGCTGTT
TCGATTGTTGCTGGCTTGAAACTTAACCAAACATATTTCGTCTCCAATAC
AAGTCAAAACCCTCCCAAATGGAATAAGCGTACGATTAAAAGATGGAAAT
TTTCGTCAAGAATTGTTCTGGTGTTAATTCATGCTCCTCAAGAAATTTCA
AAGGTTTTACAAGGGATATTATTTGGTGAAGATTATGCCGTATGGATTGT
CAATAGTGAATATGGAATCTCAGATTCATTAAATGGGAAAAATGTACAAT
CCAGCAtcaatcatttttatgaaaatgctAGAATTCTCTATTGGGAAGTT
AAATATGCCAAACGTTTTGCGACCATTTTCATTGATGATGGATCACCGAC
TTACCGGATAGAGTATNACAATCCAACATCaataattttcatgaaaatgc
cAGAATTCTCTATCGGGAAGTTAAAGTGGCCATACGTTTTGCGACCATTT
TCATTGATGATGGATCACCGACTTACCGGATAGAGTATGAACTTTTCCGT
GATATGGTTTTAACGGGTTTACGTGAATCTCAATGTCCCAGATTTTTTAC
CGtaaaatttaaagatatgaACCAAACACTGCCTTCAGTCTTTAAATCTA
TCATTGACGATGATGTATCAGTAATTGTTGTAATTGGAAATGGCAGTAGT
AAATTTTATAAGCTTCATCAGAATCATTTAAAAACACTCAATTTCTCTGT
TACAGACAAAAGAATATTTATTCTCCTCGATTTTTCATCAACGATCGAGC
TTGACTATCCATTTAAATTGAGATCGCGTTTGGAACACGTTATCACCCTG
AAAAAGACGAACAATAATCAACAATTTTTTGACACCTTTCTACATACGTT
GAACACAACGAGAAAAGAATATGGAAGGACTTTAGTGACTGGTTATAACT
GCATGGCTGCATTTGAAAATCTCATTTTAAGCTCTCTTCAACTCATTCAA
ATATACAACTATCCTTTGAATTTATTTCAATACACAacttttcaaagatt
taaaTCTTCAATGGTCAAGCGAGCCAGCAATAAGAAGAACGAGTTAAGAG
TTACCAGGTCTGAGCTTGTTGAAGCGTCAGCCAAAGACAAGTCTTACAAA
TTTAAGCGTCATCGTCATAGATTTCTCGATTGCGATAGCAACAACCGCTA
CAGACTGCCTTCATGCCGTATTCCTACATGTGGTCTTGGCAAAGAAAATA
TCTTTGGGCGCCTCCATAAAGAAAAAGGAATATGGGGTAATAATTCTTAT
GGATGGAGCTGTCGACAATGTCCTCTGAATTACTTTCAATCCAACGATAC
AGCTCTAAAAACCTCTTGTTGGCCATGTCCTGGATTTTCATTATCAACTC
AAAATCGCGATTCTTGTTATAATATTCCATATTCTGATAGATTCCTGAGT
ATTTATAATCAAGTTGGATTGAAATTAGCATGTGGAGTGTGCATCATAGG
TTTTATGATGTGCTGTTTTGCAATGGTCGTTTTGGTGACGAAGAGATACA
CACCTGTTGTTCGTGGATCAAACTTCCCAATAATGATACTTCATGCCACA
TCGATGCTTCTGTTATTCCTGGTTATACCACTACCATATATTGgacttaa
aatgtcaaaaccgACATGTTTGTTGGAGCTGTTAGTCACGTCATTGCTGG
TGTTTTCACCTTACACATTGATCTTAATCAAATGTCAAAATTTATTGCTT
GCATTCAATTCAAAGATACGTTTATCGAGAG Run BLAST on NCBI protein sequence of TCONS_00052871-protein >TCONS_00052871-protein ID=TCONS_00052871-protein|Name=TCONS_00052871-protein|organism=Clytia hemisphaerica|type=polypeptide|length=409bp
MVLTGLRESQCPRFFTVKFKDMNQTLPSVFKSIIDDDVSVIVVIGNGSSK
FYKLHQNHLKTLNFSVTDKRIFILLDFSSTIELDYPFKLRSRLEHVITLK
KTNNNQQFFDTFLHTLNTTRKEYGRTLVTGYNCMAAFENLILSSLQLIQI
YNYPLNLFQYTTFQRFKSSMVKRASNKKNELRVTRSELVEASAKDKSYKF
KRHRHRFLDCDSNNRYRLPSCRIPTCGLGKENIFGRLHKEKGIWGNNSYG
WSCRQCPLNYFQSNDTALKTSCWPCPGFSLSTQNRDSCYNIPYSDRFLSI
YNQVGLKLACGVCIIGFMMCCFAMVVLVTKRYTPVVRGSNFPIMILHATS
MLLLFLVIPLPYIGLKMSKPTCLLELLVTSLLVFSPYTLILIKCQNLLLA
FNSKIRLSR Run BLAST on NCBI transcript from alignment at scaffold_220:7128..9258 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052871 ID=TCONS_00052871|Name=TCONS_00052871|organism=Clytia hemisphaerica|type=transcript|length=2131bp|location=Sequence derived from alignment at scaffold_220:7128..9258 (Clytia hemisphaerica)
CTCTCGATAAACGTATCTTTGAATTGAATGCAAGCAATAAATTTTGACAT
TTGATTAAGATCAATGTGTAAGGTGAAAACACCAGCAATGACGTGACTAA
CAGCTCCAACAAACATGTcggttttgacattttaagtcCAATATATGGTA
GTGGTATAACCAGGAATAACAGAAGCATCGATGTGGCATGAAGTATCATT
ATTGGGAAGTTTGATCCACGAACAACAGGTGTGTATCTCTTCGTCACCAA
AACGACCATTGCAAAACAGCACATCATAAAACCTATGATGCACACTCCAC
ATGCTAATTTCAATCCAACTTGATTATAAATACTCAGGAATCTATCAGAA
TATGGAATATTATAACAAGAATCGCGATTTTGAGTTGATAATGAAAATCC
AGGACATGGCCAACAAGAGGTTTTTAGAGCTGTATCGTTGGATTGAAAGT
AATTCAGAGGACATTGTCGACAGCTCCATCCATAAGAATTATTACCCCAT
ATTCCTTTTTCTTTATGGAGGCGCCCAAAGATATTTTCTTTGCCAAGACC
ACATGTAGGAATACGGCATGAAGGCAGTCTGTAGCGGTTGTTGCTATCGC
AATCGAGAAATCTATGACGATGACGCTTAAATTTGTAAGACTTGTCTTTG
GCTGACGCTTCAACAAGCTCAGACCTGGTAACTCTTAACTCGTTCTTCTT
ATTGCTGGCTCGCTTGACCATTGAAGAtttaaatctttgaaaagtTGTGT
ATTGAAATAAATTCAAAGGATAGTTGTATATTTGAATGAGTTGAAGAGAG
CTTAAAATGAGATTTTCAAATGCAGCCATGCAGTTATAACCAGTCACTAA
AGTCCTTCCATATTCTTTTCTCGTTGTGTTCAACGTATGTAGAAAGGTGT
CAAAAAATTGTTGATTATTGTTCGTCTTTTTCAGGGTGATAACGTGTTCC
AAACGCGATCTCAATTTAAATGGATAGTCAAGCTCGATCGTTGATGAAAA
ATCGAGGAGAATAAATATTCTTTTGTCTGTAACAGAGAAATTGAGTGTTT
TTAAATGATTCTGATGAAGCTTATAAAATTTACTACTGCCATTTCCAATT
ACAACAATTACTGATACATCATCGTCAATGATAGATTTAAAGACTGAAGG
CAGTGTTTGGTtcatatctttaaattttaCGGTAAAAAATCTGGGACATT
GAGATTCACGTAAACCCGTTAAAACCATATCACGGAAAAGTTCATACTCT
ATCCGGTAAGTCGGTGATCCATCATCAATGAAAATGGTCGCAAAACGTAT
GGCCACTTTAACTTCCCGATAGAGAATTCTggcattttcatgaaaattat
tGATGTTGGATTGTNATACTCTATCCGGTAAGTCGGTGATCCATCATCAA
TGAAAATGGTCGCAAAACGTTTGGCATATTTAACTTCCCAATAGAGAATT
CTagcattttcataaaaatgattgaTGCTGGATTGTACATTTTTCCCATT
TAATGAATCTGAGATTCCATATTCACTATTGACAATCCATACGGCATAAT
CTTCACCAAATAATATCCCTTGTAAAACCTTTGAAATTTCTTGAGGAGCA
TGAATTAACACCAGAACAATTCTTGACGAAAATTTCCATCTTTTAATCGT
ACGCTTATTCCATTTGGGAGGGTTTTGACTTGTATTGGAGACGAAATATG
TTTGGTTAAGTTTCAAGCCAGCAACAATCGAAACAGCATCTTCGAATTCA
CAAAAATCGAAAACTCGATATTCGAAATCCTTTATTGTAAGTAAACCATT
AACGCGATTATAATTCTTTATTAAATACTTTTCCCAATTTAGCNTCGATA
TTCGAAATCCTTTATTGTAAGTAAACCGTTAACGCGATCAAATTCATTCT
TTATTAAATACTTTTCccaatttagttttttctgttgATACGCAAAGTTA
ACTGCAGCTTGGCATAAACTGGATGAGGAGTTCAGATTTCGATTTTCGTC
GCACTGATGATAAAGTCCTATAATGACCATAGGATCACCTCCAGGTCGTA
AAGTCTGGGACAAAACTAGATTAAAAAGGCAACAACTCGTAACAAAAATA
TGTCCCAGATACATTCTTCAAATCAATTCCA Coding sequence (CDS) from alignment at scaffold_220:7128..9258 >TCONS_00052871 ID=TCONS_00052871|Name=TCONS_00052871|organism=Clytia hemisphaerica|type=CDS|length=1227bp|location=Sequence derived from alignment at scaffold_220:7128..9258 (Clytia hemisphaerica)
TCTCGATAAACGTATCTTTGAATTGAATGCAAGCAATAAATTTTGACATT
TGATTAAGATCAATGTGTAAGGTGAAAACACCAGCAATGACGTGACTAAC
AGCTCCAACAAACATGTcggttttgacattttaagtcCAATATATGGTAG
TGGTATAACCAGGAATAACAGAAGCATCGATGTGGCATGAAGTATCATTA
TTGGGAAGTTTGATCCACGAACAACAGGTGTGTATCTCTTCGTCACCAAA
ACGACCATTGCAAAACAGCACATCATAAAACCTATGATGCACACTCCACA
TGCTAATTTCAATCCAACTTGATTATAAATACTCAGGAATCTATCAGAAT
ATGGAATATTATAACAAGAATCGCGATTTTGAGTTGATAATGAAAATCCA
GGACATGGCCAACAAGAGGTTTTTAGAGCTGTATCGTTGGATTGAAAGTA
ATTCAGAGGACATTGTCGACAGCTCCATCCATAAGAATTATTACCCCATA
TTCCTTTTTCTTTATGGAGGCGCCCAAAGATATTTTCTTTGCCAAGACCA
CATGTAGGAATACGGCATGAAGGCAGTCTGTAGCGGTTGTTGCTATCGCA
ATCGAGAAATCTATGACGATGACGCTTAAATTTGTAAGACTTGTCTTTGG
CTGACGCTTCAACAAGCTCAGACCTGGTAACTCTTAACTCGTTCTTCTTA
TTGCTGGCTCGCTTGACCATTGAAGAtttaaatctttgaaaagtTGTGTA
TTGAAATAAATTCAAAGGATAGTTGTATATTTGAATGAGTTGAAGAGAGC
TTAAAATGAGATTTTCAAATGCAGCCATGCAGTTATAACCAGTCACTAAA
GTCCTTCCATATTCTTTTCTCGTTGTGTTCAACGTATGTAGAAAGGTGTC
AAAAAATTGTTGATTATTGTTCGTCTTTTTCAGGGTGATAACGTGTTCCA
AACGCGATCTCAATTTAAATGGATAGTCAAGCTCGATCGTTGATGAAAAA
TCGAGGAGAATAAATATTCTTTTGTCTGTAACAGAGAAATTGAGTGTTTT
TAAATGATTCTGATGAAGCTTATAAAATTTACTACTGCCATTTCCAATTA
CAACAATTACTGATACATCATCGTCAATGATAGATTTAAAGACTGAAGGC
AGTGTTTGGTtcatatctttaaattttaCGGTAAAAAATCTGGGACATTG
AGATTCACGTAAACCCGTTAAAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052871-exon-scaffold_220-1491911889:7128..9258 | TCONS_00052871-exon-scaffold_220-1491911889:7128..9258 | Clytia hemisphaerica | exon |
| TCONS_00052871-exon-scaffold_220-1510915933:7128..9258 | TCONS_00052871-exon-scaffold_220-1510915933:7128..9258 | Clytia hemisphaerica | exon |
| TCONS_00052871-exon-scaffold_220-1575043694:7128..9258 | TCONS_00052871-exon-scaffold_220-1575043694:7128..9258 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_220 | supercontig | scaffold_220:7128..9258 . |
Blast
The following BLAST results are available for this feature:
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