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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052865 ID=TCONS_00052865|Name=TCONS_00052865|organism=Clytia hemisphaerica|type=transcript|length=2203bpRun BLAST on NCBI protein sequence of TCONS_00052865-protein >TCONS_00052865-protein ID=TCONS_00052865-protein|Name=TCONS_00052865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp MPNLRSRKRTQEELTHQEKGTLEDGNTTNATMAKKMTVDEINQWVMIGPERun BLAST on NCBI transcript from alignment at scaffold_220:494032..499511- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052865 ID=TCONS_00052865|Name=TCONS_00052865|organism=Clytia hemisphaerica|type=transcript|length=5480bp|location=Sequence derived from alignment at scaffold_220:494032..499511- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_220:494032..499511- >TCONS_00052865 ID=TCONS_00052865|Name=TCONS_00052865|organism=Clytia hemisphaerica|type=CDS|length=9990bp|location=Sequence derived from alignment at scaffold_220:494032..499511- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052865 vs. Swiss-Prot (Human)
Match: RNH2B (Ribonuclease H2 subunit B OS=Homo sapiens GN=RNASEH2B PE=1 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 4.970e-34 Identity = 96/283 (33.92%), Postives = 154/283 (54.42%), Query Frame = 3
Query: 258 LSLHKLPHPQNGVASLFAFKN--KQVFELMKYKDTYRSWFINQTVQKDGSFCMLTPIDPLFLALPFIEKSSIKGQFTTLDNIMVDTDHTPGLRQLECCLTHNMLLNVCDTKG---ADDIIVYKSNQEKITKWLSQKITTMAKYLESSKINVKQGAQISGYNRSSEGQNNKESS-LRYAWEMVSDYITEDRSLQLKENFGIKDPVKTVKTEEKLDPPQAKKQKLNNDPDANCLEDY---RNKDAPKKKNTGTTKLSRAQKQLDKVDKKGMKTMSSFFAVKPKKK 1079
L KL +P +G +++ F +Q+FE+ +K+ + SWFINQ+VQ G TP+DPLFL L ++ K+ +G+F LD ++VD + L+ +L +V + KG D+ YK ++EK KWL +K+ L+++ +NV Q + + + +KE +RYA ++SDYI ++ S L + + +P + L P +KK KL+++P EDY KD +K +K++ AQK L KVDK GMK++ +FF VK KKK
Sbjct: 35 LMFVKLVNPCSGEGAIYLFNMCLQQLFEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDNVFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKTNNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS------LPNPPSKKIKLSDEP-VEAKEDYTKFNTKDLKTEKK--NSKMTAAQKALAKVDKSGMKSIDTFFGVKNKKK 308 The following BLAST results are available for this feature:
BLAST of TCONS_00052865 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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