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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052859 ID=TCONS_00052859|Name=TCONS_00052859|organism=Clytia hemisphaerica|type=transcript|length=726bp
TCTACTAGAGGTCTGTTTTTGACCATAATAAAATCATAAGATTAATGCTT
TACATTTCCAGTCGTTTTGATCCCGAAGAATTAACACGTTTCACGTTAAC
GGTACGGCGAAATTACCGACGTGTTCCGTATCATAATTGGTCACATGCTT
TTACGGTGGCCCATTGCATGTATTGTGTGGTGGCGAACTCTAAAGGGCTA
CTCACTGGACTTGAGGCTGTAGCGTTGTACGTGTCCTGTTTATGTCATGA
CTTGGATCATCGTGGTAAGAACAATGAATGGATGAAGACAGAGAGTACGC
CTCTAGCAGCCGTGTATACAACCTCTACACTAGAGCATCACCATTTCAAT
CAAACCATCACTATCTTACAGCACGAAGGGCACAACATCTTCTCACACTT
GAATTCGTCAGAATATAAACAGNCCTTCTTTAATGATAGGAATAATTGGA
AAGGCAGAATCGCTGATGTATGGTGGCCCATGAGGGCCAAGTTAAATTGT
TTtgacatttctataaaaaaattcaaaaaaatttacttttcacattcatt
tttgcaatagcttttaatttaagttttgattttgatttcaaaattgattt
actttctattttcgtttcaaattaaagacgggtttgttttcaaaaacgat
tTCCAACTCAGCCCATCGAGGCCatgtcattttaaaatcaattttaaatt
tttttaaatgaattgatCTGACAGCC Run BLAST on NCBI protein sequence of TCONS_00052859-protein >TCONS_00052859-protein ID=TCONS_00052859-protein|Name=TCONS_00052859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MLYISSRFDPEELTRFTLTVRRNYRRVPYHNWSHAFTVAHCMYCVVANSK
GLLTGLEAVALYVSCLCHDLDHRGKNNEWMKTESTPLAAVYTTSTLEHHH
FNQTITILQHEGHNIFSHLNSSEYKQXFFNDRNNWKGRIADVWWPMRAKL
NCFDISIKKFKKIYFSHSFLQ Run BLAST on NCBI transcript from alignment at scaffold_220:434915..437858- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052859 ID=TCONS_00052859|Name=TCONS_00052859|organism=Clytia hemisphaerica|type=transcript|length=2944bp|location=Sequence derived from alignment at scaffold_220:434915..437858- (Clytia hemisphaerica)
TCTACTAGAGGTCTGTTTTTGACCATAATAAAATCATAAGATTAATGCTT
TACATTTCCAGTCGTTTTGATCCCGAAGAATTAACACGTTTCACGTTAAC
GGTACGGCGAAATTACCGACGTGTTCCGTATCATAATTGGTCACATGCTT
TTACGGTGGCCCATTGCATGTATTGTGTGGTGGCGAACTCTAAAGGGCTA
CTCACTGGACTTGAGGTAAGTCATGTTTTGTTTATTACTTATATTCATGA
TATGCACCATTGCAAAGTCTTCTACCGACCTAACAGCTGATTTGTTGCAA
GTGACGTATTGACTGATTTAACTTCACTTACAAACAATCAGTTATTGGGT
CCGTGATGTGATGTCAGAAGACATTGCAATGGTGCATATCATGAATAGAC
TTCCTTCCACTGGTCTGATGAATGCTTTATCAACATCCCAGAAGACGATT
ACCCCCAATGTTGCAGAGGCTCAATTTTCTGTCAGATAAAGTCCTAGCTC
ATTTTGTACGCTTCAAATCGATATTTATGTTTATCGATTACCTAGTTTTC
CCTTTCTGTAACATAATCATCCTAGAAAAGTGTTACTTCGTCAAACTCTT
GTTAATTCGAACTTCTATTATTCGAATCTTTTACTAATTCAAACTAATTC
TCAATTCCTGTCATGGGGAAAGCCTTGTAAAATACTATATAATTTGAATC
TTTAAGATCGAATTAGATAGATTCAATTGTATATACTCCATCTTTCATTC
TCCAGGCTGTAGCGTTGTACGTGTCCTGTTTATGTCATGACTTGGATCAT
CGTGGTAAGAACAATGAATGGATGAAGACAGAGAGTACGCCTCTAGCAGC
CGTGTATACAACCTCTACACTAGAGCATCACCATTTCAATCAAACCATCA
CTATCTTACAGGTTAATTTCCCTATTTTCTCATAAAAGGGGCTACCTCTT
CCTACCTAGGTGCGAGAGTCTTGACTCTCTAAAAGCAATTTGATTATTTT
CATTAAATTGAACTTGTCCTATACTGCCAATATTTCTCCTAACAGAATGT
GTTACTTTAAAATATTTGTTGATGGTTTCTTGGTATGGCTTGTAGTTTAC
ATTATGCCAGGGAGTCATTAGCGTGGTGGATTGACTAAAATTCGGGCAAA
CTGGGGAGGCAAATTTAGAAGANTTGAAGACATAATTTTTTTTAACTGAT
ATCAATTTAAACAACAAACAAGACGACTCAAAGTCAAAAATTTCGCAAAG
TATTTGATTGGACCTGAGAAAAACAGTTACCCTTAGAGACAAGGCGAAAA
AGTGACTCTTAGACCCCTCTTAGCGCACATTTTCAAAAAAAATTCTAACC
TTCTAGAGATTTTTTTGCCTTTTCAAGTTTCGTACCTTAAATATTTCAGA
GACTTGGGAAGGTTAAAAAAAGAACCTTAGCATCAGCATATACCTGGTAT
ATACCTATTTATGCCCAAGTACACCCCCCACCTTCACCATTAAAAGAATG
CAATAAATAGAACGGGGCTAGAGCTTTATTGTCACCCAAATGTGAACTGT
CCCAGTGTGGCCAAGTTACATATCAATATCATACCAATATCTTTGACTAT
TTACAAAAATATTAAAATGTTTACACCTTGTAGATAAATCAAAAAACATT
AGTTTCTCAATATTTCAAAAACTTTTAGTCATATAGATTGTTAACCTCCC
ATATATCTGTCCAATTCCAACGGTATATAACTTTCTACTTTAGCATAACT
TGGTACTGAGAATTTGTTTGAAAGGTAAAGTATCTACATACTTTTGAGAC
GACAGACTTTAATGACAGATACATAATATATACTCAATAAAAGTCAAAAT
CTCAATAAAACAAAATCAAACACAATCAATTTCGGCGGGCATTTATTTTG
CTGATGCCTTGAAAAATTAAAATTAAAATATTGCTTTGAGATAAAAAAAT
AACTGTTTCAAGGCTCGAAAAGCACAAATTTGGAAAATTACATGAATATT
TTAAATTTTATGGAAATTAATTTAAATTTTTAAGGCCAATTTTTTTCTGC
AAAAATATTTTACCTTAAAGCTACTGCTACTTTGTTACTGACGCTATTTG
CCTTGCATCCATATCATTGTGACGTAGAGTTACATATTTTTGAGAATTTA
TTGATTTCGGAGCAGGTCGATCAAATTTGATTGACGAAATTTCCATTTCT
TTTTTTGATGAATAACCAATCAATTTGTTCCAATATTCGATAGGTAATGA
AGCCCATTAGAAAATTTTGAGTATTGATCANACCGTATGTAAGGTGTAAA
AGAGCAAAAGGGTGCCGAAATTAGTAATTAGAGGCGTCTTTTTGCACCCT
TTGTATTTCGGTGCCCCTTCGAAAAACGCTGCCGTTGGGGCATTTGCTCC
TTGTCACCACGCTACTTTTAATCCAATATCTCAATAAATAAAAATAAATA
TAAAAATAACTAAATTAACAAATACTAAAGTCCTCTGTACCATTTATTTT
ACGTTTTTTGCCTCTCGTTAACTCGAAGTCACCCCCTTGTGGTGAAGGAG
TGAATAGATGTTTTCTTAACAAGCAAACTTCCATTTTAGCACGAAGGGCA
CAACATCTTCTCACACTTGAATTCGTCAGAATATAAACAGNCCTTCTTTA
ATGATAGGAATAATTGGAAAGGCAGAATCGCTGATGTATGGTGGCCCATG
AGGGCCAAGTTAAATTGTTTTGACATTTCTATAAAAAAATTCAAAAAAAT
TTACTTTTCACATTCATTTTTGCAATAGCTTTTAATTTAAGTTTTGATTT
TGATTTCAAAATTGATTTACTTTCTATTTTCGTTTCAAATTAAAGACGGG
TTTGTTTTCAAAAACGATTTCCAACTCAGCCCATCGAGGCCATGTCATTT
TAAAATCAATTTTAAATTTTTTTAAATGAATTGATCTGACAGCC Coding sequence (CDS) from alignment at scaffold_220:434915..437858- >TCONS_00052859 ID=TCONS_00052859|Name=TCONS_00052859|organism=Clytia hemisphaerica|type=CDS|length=1548bp|location=Sequence derived from alignment at scaffold_220:434915..437858- (Clytia hemisphaerica)
CACGAAGGGCACAACATCTTCTCACACTTGAATTCGTCAGAATATAAACA
GNCCTTCTTTAATGATAGGAATAATTGGAAAGGCAGAATCGCTGATGTAT
GGTGGCCCATGAGGGCCAAGTTAAATTGTTTTGACATTTCTATAAAAAAA
TTCAAAAAAATTTACTTTTCACATTCATTTTTGCAATAGGCTGTAGCGTT
GTACGTGTCCTGTTTATGTCATGACTTGGATCATCGTGGTAAGAACAATG
AATGGATGAAGACAGAGAGTACGCCTCTAGCAGCCGTGTATACAACCTCT
ACACTAGAGCATCACCATTTCAATCAAACCATCACTATCTTACAGATGCT
TTACATTTCCAGTCGTTTTGATCCCGAAGAATTAACACGTTTCACGTTAA
CGGTACGGCGAAATTACCGACGTGTTCCGTATCATAATTGGTCACATGCT
TTTACGGTGGCCCATTGCATGTATTGTGTGGTGGCGAACTCTAAAGGGCT
ACTCACTGGACTTGAGCACGAAGGGCACAACATCTTCTCACACTTGAATT
CGTCAGAATATAAACAGNCCTTCTTTAATGATAGGAATAATTGGAAAGGC
AGAATCGCTGATGTATGGTGGCCCATGAGGGCCAAGTTAAATTGTTTTGA
CATTTCTATAAAAAAATTCAAAAAAATTTACTTTTCACATTCATTTTTGC
AATAGGCTGTAGCGTTGTACGTGTCCTGTTTATGTCATGACTTGGATCAT
CGTGGTAAGAACAATGAATGGATGAAGACAGAGAGTACGCCTCTAGCAGC
CGTGTATACAACCTCTACACTAGAGCATCACCATTTCAATCAAACCATCA
CTATCTTACAGATGCTTTACATTTCCAGTCGTTTTGATCCCGAAGAATTA
ACACGTTTCACGTTAACGGTACGGCGAAATTACCGACGTGTTCCGTATCA
TAATTGGTCACATGCTTTTACGGTGGCCCATTGCATGTATTGTGTGGTGG
CGAACTCTAAAGGGCTACTCACTGGACTTGAGCACGAAGGGCACAACATC
TTCTCACACTTGAATTCGTCAGAATATAAACAGNCCTTCTTTAATGATAG
GAATAATTGGAAAGGCAGAATCGCTGATGTATGGTGGCCCATGAGGGCCA
AGTTAAATTGTTTTGACATTTCTATAAAAAAATTCAAAAAAATTTACTTT
TCACATTCATTTTTGCAATAGGCTGTAGCGTTGTACGTGTCCTGTTTATG
TCATGACTTGGATCATCGTGGTAAGAACAATGAATGGATGAAGACAGAGA
GTACGCCTCTAGCAGCCGTGTATACAACCTCTACACTAGAGCATCACCAT
TTCAATCAAACCATCACTATCTTACAGATGCTTTACATTTCCAGTCGTTT
TGATCCCGAAGAATTAACACGTTTCACGTTAACGGTACGGCGAAATTACC
GACGTGTTCCGTATCATAATTGGTCACATGCTTTTACGGTGGCCCATTGC
ATGTATTGTGTGGTGGCGAACTCTAAAGGGCTACTCACTGGACTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052859-exon-scaffold_220-1575043694:437644..437858 | TCONS_00052859-exon-scaffold_220-1575043694:437644..437858 | Clytia hemisphaerica | exon |
| TCONS_00052859-exon-scaffold_220-1575043694:436948..437103 | TCONS_00052859-exon-scaffold_220-1575043694:436948..437103 | Clytia hemisphaerica | exon |
| TCONS_00052859-exon-scaffold_220-1575043694:434915..435269 | TCONS_00052859-exon-scaffold_220-1575043694:434915..435269 | Clytia hemisphaerica | exon |
| TCONS_00052859-exon-scaffold_220-1510915933:437644..437858 | TCONS_00052859-exon-scaffold_220-1510915933:437644..437858 | Clytia hemisphaerica | exon |
| TCONS_00052859-exon-scaffold_220-1510915933:436948..437103 | TCONS_00052859-exon-scaffold_220-1510915933:436948..437103 | Clytia hemisphaerica | exon |
| TCONS_00052859-exon-scaffold_220-1510915933:434915..435269 | TCONS_00052859-exon-scaffold_220-1510915933:434915..435269 | Clytia hemisphaerica | exon |
| TCONS_00052859-exon-scaffold_220-1491911889:437644..437858 | TCONS_00052859-exon-scaffold_220-1491911889:437644..437858 | Clytia hemisphaerica | exon |
| TCONS_00052859-exon-scaffold_220-1491911889:436948..437103 | TCONS_00052859-exon-scaffold_220-1491911889:436948..437103 | Clytia hemisphaerica | exon |
| TCONS_00052859-exon-scaffold_220-1491911889:434915..435269 | TCONS_00052859-exon-scaffold_220-1491911889:434915..435269 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_220 | supercontig | scaffold_220:434915..437858 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008081 | phosphoric diester hydrolase activity |
| GO:0004114 | 3',5'-cyclic-nucleotide phosphodiesterase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007165 | signal transduction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007165 |
signal transduction |
| molecular_function |
GO:0004114 |
3',5'-cyclic-nucleotide phosphodiesterase activity |
| molecular_function |
GO:0008081 |
phosphoric diester hydrolase activity |
Blast
BLAST of TCONS_00052859 vs. Swiss-Prot (Human)
Match: PDE10 (cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A OS=Homo sapiens GN=PDE10A PE=1 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 9.914e-46 Identity = 73/124 (58.87%), Postives = 97/124 (78.23%), Query Frame = 3
Query: 57 SSRFDPEELTRFTLTVRRNYRRVPYHNWSHAFTVAHCMYCVVANSKGLLTGLEAVALYVSCLCHDLDHRGKNNEWMKTESTPLAAVYTTSTLEHHHFNQTITILQHEGHNIFSHLNSSEYKQXF 428
+S F+ E+L RF ++V++NYRRVPYHNW HA TVAHCMY ++ N+ L T LE L ++CLCHDLDHRG +N +++ PLAA+Y+TST+E HHF+QT++ILQ EGHNIFS L+SSEY+Q
Sbjct: 490 TSCFELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAILQNNHTLFTDLERKGLLIACLCHDLDHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVL 613
The following BLAST results are available for this feature:
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