TCONS_00052858 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052858
Unique NameTCONS_00052858
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length766

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052858 ID=TCONS_00052858|Name=TCONS_00052858|organism=Clytia hemisphaerica|type=transcript|length=766bp
GTAAATCTTCAACATTTCatggaatttgagaaaatgcaTAATTGAAAATG
AGATTGTTTCAGACCGTTGTctaaatatttgattttcttcaaattttctt
gcTATAAGTTAAtttaatatttacatttttaatttcaacaCATTTCACAA
CCGCGTACATTAACCCCCGTTCTAATGTTATTTTCATCCCTATAAAAAGG
TCATTTCTCTCTTCAATCATCCATTTCAAATCATAATCTTTCCTCTTGAG
TTAATCACATTTTCGTGTATTTCTCACATCACATCACCATGAAGCTCTTC
ATCATTGCCGTCGCTCTTTTTGCCGTCGTCGCATCAGAAGTCCAACAAGA
CTTTTTCTGTTCCAGAGACTCAGACTGTGACGAAAATGCTTGTTGTACCA
AAGTTGGAATCTGTTCCGATTACGTCGAAGAAGGAGGACTCTGCACCATC
CGAAGCAAATTAGCCTGTGGATGCCGACCAGGATTAGACTGTGTCCGATC
AAGCTTCATCACCAAACGATGTGTCGACAACAACCCTGGATCCGGTGGTT
TCTAAATTCTTCTTTCCAATTTGTTTCTTCTTTATGAAATAATATATATA
CAATATAAAAAAGTCATTATGTACGTTCCTTACAacaatacacccccttc
tcacagacccactggaacccttcccactggaaaatttggccaaaatatcg
tccccagtggaaaattatcctccaatttctGTCCTCACTGaaagtaatca
aataaaccaatcttca
Run BLAST on NCBI

transcript from alignment at scaffold_220:417674..419354-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052858 ID=TCONS_00052858|Name=TCONS_00052858|organism=Clytia hemisphaerica|type=transcript|length=1681bp|location=Sequence derived from alignment at scaffold_220:417674..419354- (Clytia hemisphaerica)
GTAAATCTTCAACATTTCATGGAATTTGAGAAAATGCATAATTGAAAATG
AGATTGTTTCAGACCGTTGTCTAAATATTTGATTTTCTTCAAATTTTCTT
GCTATAAGTTAATTTAATATTTACATTTTTAATTTCAACACATTTCACAA
CCGCGTACATTAACCCCCGTTCTAATGTTATTTTCATCCCTATAAAAAGG
TCATTTCTCTCTTCAATCATCCATTTCAAATCATAATCTTTCCTCTTGAG
TTAATCACATTTTCGTGTATTTCTCACATCACATCACCATGAAGCTCTTC
ATCATTGCCGTCGCTCTTTTTGCCGTCGTCGCATCAGAAGTCCAACAAGA
CTTTGTAAGTTTTTGAACAATTTGTTCCTTTTCCTCAATCTAGTTTTTTT
ATAAGAACATCCAACATTTTTGAAGTCTTTTGGGTGTTCCTAATTTTTTG
AGGTTTAAGCCTAATAATTTTCTTATTTTCACAATTTTATGAGTGTATTT
GTGCAATTTCCTATAAAATTGGGTATTTTACAGTCCGTAAGACCTTCAAA
TGTTCTTAACTTATTCTTATAATATTTTGACCATCGAAGCCTTATTTTCT
AATATATTTTGTTCTTATAAAAAAACACGAGACGAATGAATATTATTACT
AAAACCGTTAGTTGTGATCAAGATTAAACGGGTCTTGAAGAGGGAGAGGA
CATAAATAAGTTCTAAATTTTCTTTGACTCCAATTGTGATTGATTTGGAA
TCTGATGAATTTTAAAAACTCCAATCTTTTCCAATTTTTTCTTCATTCAG
TTCTGTTCCAGAGACTCAGACTGTGACGAAAATGCTTGTTGTACCAAAGT
TGGAATCTGTTCCGATTACGTCGAAGAAGGAGGACTCTGCACCATCCGAG
TAAGTCCATCATACTGTAACAAATAAATCCTGTTTTCTTTTTAAATACAC
GGGTTGCAAAATTATATCAATGCAGTCAAAACATGTGATTACAGTACTCG
GAAAAGTTCATGTGATTTTTTATATTCCCATGTTACTTACACAACTTACA
GCTGATAAACTTTATTAGTGTCAATAAATTCGAACCACTCAGATATAAAT
GTCAAGCACATTATAAGTTTCGAGTAAAAGCGTAATTTGTCTTCAGACAG
TTTGCAGCCTGTGTATCGCAATATTCAGTGGACTCTCACTAATTCGAACT
TCTATCATTCCAATCTTATTTTAATTCGAAATTTTAGCCACGGTTTTGAC
AAGCATTGGAAAACATAGAGAATATAAACATTAGATCAGGCTCCTTTTTG
TACAGAACAACACCGTAGTTCATTGTTATCCTATTATTCAATATTTAATT
TTCTCTTCTGTTTTGTAGAGCAAATTAGCCTGTGGATGCCGACCAGGATT
AGACTGTGTCCGATCAAGCTTCATCACCAAACGATGTGTCGACAACAACC
CTGGATCCGGTGGTTTCTAAATTCTTCTTTCCAATTTGTTTCTTCTTTAT
GAAATAATATATATACAATATAAAAAAGTCATTATGTACGTTCCTTACAA
CAATACACCCCCTTCTCACAGACCCACTGGAACCCTTCCCACTGGAAAAT
TTGGCCAAAATATCGTCCCCAGTGGAAAATTATCCTCCAATTTCTGTCCT
CACTGAAAGTAATCAAATAAACCAATCTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033391XLOC_033391Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052858-exon-scaffold_220-1575043694:419001..419354TCONS_00052858-exon-scaffold_220-1575043694:419001..419354Clytia hemisphaericaexon
TCONS_00052858-exon-scaffold_220-1575043694:418456..418554TCONS_00052858-exon-scaffold_220-1575043694:418456..418554Clytia hemisphaericaexon
TCONS_00052858-exon-scaffold_220-1575043694:417674..417986TCONS_00052858-exon-scaffold_220-1575043694:417674..417986Clytia hemisphaericaexon
TCONS_00052858-exon-scaffold_220-1510915933:419001..419354TCONS_00052858-exon-scaffold_220-1510915933:419001..419354Clytia hemisphaericaexon
TCONS_00052858-exon-scaffold_220-1510915933:418456..418554TCONS_00052858-exon-scaffold_220-1510915933:418456..418554Clytia hemisphaericaexon
TCONS_00052858-exon-scaffold_220-1510915933:417674..417986TCONS_00052858-exon-scaffold_220-1510915933:417674..417986Clytia hemisphaericaexon
TCONS_00052858-exon-scaffold_220-1491911889:419001..419354TCONS_00052858-exon-scaffold_220-1491911889:419001..419354Clytia hemisphaericaexon
TCONS_00052858-exon-scaffold_220-1491911889:418456..418554TCONS_00052858-exon-scaffold_220-1491911889:418456..418554Clytia hemisphaericaexon
TCONS_00052858-exon-scaffold_220-1491911889:417674..417986TCONS_00052858-exon-scaffold_220-1491911889:417674..417986Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_220supercontigscaffold_220:417674..419354 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.127389	0.31056	0.216354	0.175253	0.476612	0.203627	0.651493	0.492693	0.53674	0.864291	0.0645309	0.767342	205.239	194.622	684.077	1675.15	81.0944	73.709	1484.31	1087.79	439.52	410.652	1186.31	1295.57	876.295	1034.08	67.5119	101.598	29.8733	49.339
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052858 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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