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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052814 ID=TCONS_00052814|Name=TCONS_00052814|organism=Clytia hemisphaerica|type=transcript|length=4236bpRun BLAST on NCBI protein sequence of TCONS_00052814-protein >TCONS_00052814-protein ID=TCONS_00052814-protein|Name=TCONS_00052814-protein|organism=Clytia hemisphaerica|type=polypeptide|length=602bp MAAIDDSFKFEDTTLLEQLFSQKEGLLNENNHLFCKEYLENLSSYGLSKLRun BLAST on NCBI transcript from alignment at scaffold_220:339008..362143+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052814 ID=TCONS_00052814|Name=TCONS_00052814|organism=Clytia hemisphaerica|type=transcript|length=23136bp|location=Sequence derived from alignment at scaffold_220:339008..362143+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_220:339008..362143+ >TCONS_00052814 ID=TCONS_00052814|Name=TCONS_00052814|organism=Clytia hemisphaerica|type=CDS|length=23517bp|location=Sequence derived from alignment at scaffold_220:339008..362143+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052814 vs. Swiss-Prot (Human)
Match: COG8 (Conserved oligomeric Golgi complex subunit 8 OS=Homo sapiens GN=COG8 PE=1 SV=2) HSP 1 Score: 452.595 bits (1163), Expect = 1.760e-142 Identity = 231/535 (43.18%), Postives = 330/535 (61.68%), Query Frame = 3
Query: 2148 KFEDTTLLEQLFSQKEGLLNENNHLFCKEYLENLSSYGLSKLAHEPETLREEHSNITQQTQNLAFNNYSTFIQAAECSKEIYKDFNIVEEHLDSVEVNLPKFANTIEHFSKSSQEINACRKQNSLVLSRHTQLLEVLEISQLMDTCVRNGYYEEALELANYVKRLERKFSQIKIITDIAVEVKRSTQYMLSQLLQQLKGNVQLPACLRIISYIRQLEVFTEAELRIKFLQGRDAWFQSVLSQIPRDDIYTHMTKVIDASRVSLFDIITQYNAIFSDNEPIYSSNDDKRQSN-APILHSWVLHKLSNFLTTLDEGISKGLHGRLDSLFGQTMYFGLSFSRIGADFRGLIVSLFIKHTLKIFRAKIRQVTQNFEDDMSTY---TARSIKREYQSASSQSKAGNDPCIPPHELLDFPPMACYLNGVLGALNEFRQFPSLTLVFQMKKCLLNSLEKVMLSLENWARLESKSLPKEQSEDVKYLCYIVCRHFLPYIRTVFSSVFSLNSVQEMMGRTPQSVNSTQFKDMFTLDIGSLQNHL 3740
+ ED LL LF + YL LS GL +L EPE L EE + + QQT++LAF NY TFI+ AEC++ I++ F VE L + LP F + +F K ++EI++ R+ NSL L+RHT++LE+LEI QLMDTCVRN YYEEALELA YV+RLERK+S I +I I EV++S Q MLSQL+QQL+ N+QLPACLR+I Y+R+++VFTEAELR+KFLQ RDAW +S+L+ IP DD Y H+TK I+ASRV LFDIITQY AIFSD +P+ + N + I H WVL K+S FL L+ + +G+ G LDSL GQ MYFGLSFSR+GADFRG + +F + + F+ I++ + F+++M++Y +A +I ++ PP LLDFPP+AC+LN +L A N+ R + L + L ++L KV + + R E + + E C + +PY+ +F + + +G P + +++ ++ ++IG++Q L
Sbjct: 20 EVEDEGLLASLFRDRFPEAQWRERPDVGRYLRELSGSGLERLRREPERLAEERAQLLQQTRDLAFANYKTFIRGAECTERIHRLFGDVEASLGRLLDRLPSFQQSCRNFVKEAEEISSNRRMNSLTLNRHTEILEILEIPQLMDTCVRNSYYEEALELAAYVRRLERKYSSIPVIQGIVNEVRQSMQLMLSQLIQQLRTNIQLPACLRVIGYLRRMDVFTEAELRVKFLQARDAWLRSILTAIPNDDPYFHITKTIEASRVHLFDIITQYRAIFSDEDPLLPPAMGEHTVNESAIFHGWVLQKVSQFLQVLETDLYRGIGGHLDSLLGQCMYFGLSFSRVGADFRGQLAPVFQRVAISTFQKAIQETVEKFQEEMNSYMLISAPAILGTSNMPAAVPATQPGTLQPPMVLLDFPPLACFLNNILVAFNDLRLCCPVALAQDVTGALEDALAKVTKIILAFHRAEEAAFSSGEQELFVQFCTVFLEDLVPYLNRCLQVLFPPAQIAQTLGIPPTQL--SKYGNLGHVNIGAIQEPL 552 The following BLAST results are available for this feature:
BLAST of TCONS_00052814 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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