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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052778 ID=TCONS_00052778|Name=TCONS_00052778|organism=Clytia hemisphaerica|type=transcript|length=2425bpRun BLAST on NCBI transcript from alignment at scaffold_22:110508..136319- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052778 ID=TCONS_00052778|Name=TCONS_00052778|organism=Clytia hemisphaerica|type=transcript|length=25812bp|location=Sequence derived from alignment at scaffold_22:110508..136319- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00052778 vs. Swiss-Prot (Human)
Match: JAG1 (Protein jagged-1 OS=Homo sapiens GN=JAG1 PE=1 SV=3) HSP 1 Score: 370.933 bits (951), Expect = 1.703e-111 Identity = 255/769 (33.16%), Postives = 370/769 (48.11%), Query Frame = 2
Query: 179 KMTDADTIIELQLKKYANPGSRLLNGECCFNLKMRG--RCHL-SCNAFFDICIKNYLNPHPFDN-CGLHELKTKVLSISQKNASPKVFQNGLELRPGVINPWKFTFKGAFTGLSIGILMNHVNFIPKDNLPPNNADETIDKYVLDYSNGDIEPKANRSVSIKKVFNQQNNRANAVLTFAIRAYCATHFHDVDCNTKCIPADDSIKGHYTCHPKDGAKMCKKGWSGHNCLQARCKEGCNVPYATCSQPFGCDCKPGWRHKDHRKLCDKCIANPSCANGYCVKGNDCVCDKDWAGVNCDKDKNKC-RKSPCQNGGRCTNDGLDRYKCHCKQGYSGNECQLENNACKFNPCGKTGHCFNLITDYRCSCNLGYTGRNCSENINDCEGIVCLNGGKCEDLVANHKCNCTNGYEGPKCGSNIDDCDPDPCKNGANCNDGIADYTCYCPKGYTGKNCDSEINECITPAEPCVKDQSINCTDKIADFECYCVKGYTGKRCEVDINDCKPDPCLY-GDCKDMVNDYKCICQPGFNGTNCENPINECLIQKNICNNGT-CIDGHLNYTCQCLPGFTGTFCESDIDECKSLPCS---------------------------NNGTCVNQVNG-FSCDCAVGFEGDQCETDTDNCESNPCQR-GNCTNLINDYLCTCPPGYTGKNCKTDINECDPVDICNNGTCKDGINSYQCDCYPGFNGTHCEHNIDECSNQPCENNGTCIDGINDFSCECAPGWTGRLCNYETIECCIQPPCNSSGHC 2377
K+ A EL++ N L NG CC + G +C C+ +F +C+K Y + C T V+ + N + R ++ P+ F + ++T L+ D + P D I+K +G I P ++ + N A + IR C +++ CN C P DD GHY C ++G K C +GW G C +A C++GC+ + +C P C C+ GW+ CDKCI +P C +G C + C+C+ +W G CDKD N C PC NGG C+N G D+Y+C C +GYSG C++ +AC +PC G C + C C+ G+TG CS NI+DC C +GG C+DLV KC C + G C + ++C+ PC N +C + IA Y C C G+ G+NCD IN+C+ C D S C D + + C C GY G CE DI++C +PCL G C++ +N ++C+C GF+G C+ I+ C + N C NG C + +Y C+C + G C D C++ PC +G C +Q G F+CDC GF G C + ++CESNPC+ G C + +N Y C C G+ G C+T+IN+C N GTC+D +N + CDC G+ G C +C C N GTC D + F C C GW G CN C+ PC++ G C
Sbjct: 27 KVCGASGQFELEILSMQNVNGELQNGNCCGGARNPGDRKCTRDECDTYFKVCLKEYQSRVTAGGPCSFGSGSTPVIGGNTFNLKASRGND----RNRIVLPFSFAWPRSYT------LLVEAWDSSNDTVQP---DSIIEKAS---HSGMINPS-------RQWQTLKQNTGVAHFEYQIRVTCDDYYYGFGCNKFCRPRDDFF-GHYACD-QNGNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGL----YCDKCIPHPGCVHGICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEIAEHACLSDPCHNRGSCKETSLGFECECSPGWTGPTCSTNIDDCSPNNCSHGGTCQDLVNGFKCVCPPQWTGKTCQLDANECEAKPCVNAKSCKNLIASYYCDCLPGWMGQNCDININDCLG---QCQNDAS--CRDLVNGYRCICPPGYAGDHCERDIDECASNPCLNGGHCQNEINRFQCLCPTGFSGNLCQLDIDYC--EPNPCQNGAQCYNRASDYFCKCPEDYEGKNCSHLKDHCRTTPCEVIDSCTVAMASNDTPEGVRYISSNVCGPHGKCKSQSGGKFTCDCNKGFTGTYCHENINDCESNPCRNGGTCIDGVNSYKCICSDGWEGAYCETNINDCSQNPCHNGGTCRDLVNDFYCDCKNGWKGKTCHSRDSQCDEATCNNGGTCYDEGDAFKCMCPGGWEGTTCNIARNSSCLPNPCHNGGTC 759 HSP 2 Score: 280.411 bits (716), Expect = 8.555e-80 Identity = 202/553 (36.53%), Postives = 261/553 (47.20%), Query Frame = 2
Query: 821 CKKGWSGHNCLQAR-------------CKEGCNVPYATCSQPFGCDCKPGWRHKDHRKLCDKCIANPSCANGYC---VKGNDCVCDKDWAGVNCDKDKNKCRKSPCQNGGRCTNDGLDRYKCHCKQGYSGNECQLENNACKFNPCGKTGHCFNLITDYRCSCNLGYTGRNCSENINDCEGIVCLNGGKCEDLVANHKCNCTNGYEGPKCGSNIDDCDPDPCKNGANCNDGIADYTCYCPKGYTGKNCDSEINEC-ITPAE---PCVKDQSINCT--------------------DKIADFECYCVKGYTGKRCEVDINDCKPDPCLYG-DCKDMVNDYKCICQPGFNGTNCENPINECLIQKNICNNG-TCIDGHLNYTCQCLPGFTGTFCESDIDECKSLPCSNNGTCVNQVNGFSCDCAVGFEGDQCETDTDN-CESNPCQRG-NCTNLINDYLCTCPPGYTGKNCKTDINECDPVDICNNGTCKDGINSYQCDCYPGFNGTHCEHNIDECSNQPCENNGTCIDGINDFSCECAPGWTGRLCNYETIECCI 2347
C +G+SG NC A CKE S F C+C PGW D C N G C V G CVC W G C D N+C PC N C N + Y C C G+ G C + N C C C +L+ YRC C GY G +C +I++C CLNGG C++ + +C C G+ G C +ID C+P+PC+NGA C + +DY C CP+ Y GKNC + C TP E C + N T F C C KG+TG C +INDC+ +PC G C D VN YKCIC G+ G CE IN+C +N C+NG TC D ++ C C G+ G C S +C C+N GTC ++ + F C C G+EG C ++ C NPC G C + C C G+ G C + N+C P N+GTC DG N Y+C+C PGF G C NI+EC + PC TC+D IN + C C PG +G C + CI
Sbjct: 324 CPEGYSGPNCEIAEHACLSDPCHNRGSCKET--------SLGFECECSPGWTGPTCSTNIDDCSPNNCSHGGTCQDLVNGFKCVCPPQWTGKTCQLDANECEAKPCVNAKSCKNL-IASYYCDCLPGWMGQNCDININDC-LGQCQNDASCRDLVNGYRCICPPGYAGDHCERDIDECASNPCLNGGHCQNEINRFQCLCPTGFSGNLCQLDIDYCEPNPCQNGAQCYNRASDYFCKCPEDYEGKNCSHLKDHCRTTPCEVIDSCTVAMASNDTPEGVRYISSNVCGPHGKCKSQSGGKFTCDCNKGFTGTYCHENINDCESNPCRNGGTCIDGVNSYKCICSDGWEGAYCETNINDC--SQNPCHNGGTCRDLVNDFYCDCKNGWKGKTCHSRDSQCDEATCNNGGTCYDEGDAFKCMCPGGWEGTTCNIARNSSCLPNPCHNGGTCVVNGESFTCVCKEGWEGPICAQNTNDCSPHPCYNSGTCVDGDNWYRCECAPGFAGPDCRININECQSSPCAFGATCVDEINGYRCVCPPGHSGAKCQEVSGRPCI 864 HSP 3 Score: 142.124 bits (357), Expect = 2.139e-34 Identity = 95/272 (34.93%), Postives = 138/272 (50.74%), Query Frame = 2
Query: 1601 ECYCVKGYTGKRCEVDINDCKPDP-CLYGDCKDMVNDYKCICQPGFNGTNCENPINECLIQKNICNNGTCID-GHLNYTCQCLPGFTGTFCESDIDECKSLPCSNNGTCVNQVNGFSCDCAVGFEGDQCETDTDNCESNPCQRG-NCTNLINDYLCTCPPGYTGKNCKTDINECDPVDICNNGTCKDGINSYQCDCYPGFNGTHCEHNIDECSNQPCENNGTCIDGINDFSCECAPGWTGRLCNYETIECCIQPPCNSSGHCPPLRDVCQNN 2407
+C C G+ G C+ C P P C++G C + ++C+C+ + G C+ +N C + N GTC + G Y C C G++G CE C S PC N G+C GF C+C+ G+ G C T+ D+C N C G C +L+N + C CPP +TGK C+ D NEC+ N +CK+ I SY CDC PG+ G +C+ NI++C Q C+N+ +C D +N + C C PG + HC D C +N
Sbjct: 250 DCRCQYGWQGLYCD----KCIPHPGCVHGICNE---PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEIAEHACLSDPCHNRGSCKETSLGFECECSPGWTGPTCSTNIDDCSPNNCSHGGTCQDLVNGFKCVCPPQWTGKTCQLDANECEAKPCVNAKSCKNLIASYYCDCLPGWMGQNCDININDCLGQ-CQNDASCRDLVNGYRCICPPG-------------------YAGDHCERDIDECASN 494 The following BLAST results are available for this feature:
BLAST of TCONS_00052778 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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