TCONS_00052749 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052749
Unique NameTCONS_00052749
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length790

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052749 ID=TCONS_00052749|Name=TCONS_00052749|organism=Clytia hemisphaerica|type=transcript|length=790bp
TGTGGAATATCAACATTAAAAAGCTTTTAGGTTTGCTATTCTATTTATTc
acaatttacaaaaaaaaataatgaaaattaagactgattttagcaaaata
atagcgaaataaaaatgattttgacaAATCTAAAAGTGTTTAGGGAACAA
AGTTGCCATAAAGTCCGTCAGCATTGGGGTCCAAGGTGTACCAGAATCCC
AAATGTTGTCTGGTCATCTCATCAACATCAAGTTTGCCACTGTTGTCCAA
ATCGCAATGTTTGAATGTACGTTCGGCGTCTTCGTCTGATGGACAGATTC
CAGAGATTCTCCCGTAAGCTTTCCATTCGTCCAAACTGATCGAGCCTGAA
CCGTCTTTGTCGAAAATGTCGAAGACAGCTTCTCCCCAGTCGCGAATCAA
AGATTTCTTGTTTTGGGACCAGAGTTTCAAATCGTGTGTGGCCAAGTTCT
TCCACCCTTCAACGAACTGTGGGAATTCGACTTTTTTGCCATAATCCATA
CCGATCTTCTTGAAAAAGTTCTCAACAGCATCTTGATGACGTTTTGTTTG
AGCTGGAGTAGCTCCGAGTTTGGCGCAAATGTCATCCGAAGCTTTGGAGA
CAATTTCATCCAAAGTGATTTTTCCGTCACCGTTGATGTCCAAAAAGTTG
AACATAAATCTGTGTCGGTTTACCCATTTTGGATCATCGAAGTTGGTCTT
GAGTTTGACAGCATATTTTGAAGCAGTGTCGGCCATTTTGAGATTTGCTT
TGGATTGCAAATGTGATGATCTGCTAGCTAATGCTTAGAT
Run BLAST on NCBI

protein sequence of TCONS_00052749-protein

>TCONS_00052749-protein ID=TCONS_00052749-protein|Name=TCONS_00052749-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MADTASKYAVKLKTNFDDPKWVNRHRFMFNFLDINGDGKITLDEIVSKAS
DDICAKLGATPAQTKRHQDAVENFFKKIGMDYGKKVEFPQFVEGWKNLAT
HDLKLWSQNKKSLIRDWGEAVFDIFDKDGSGSISLDEWKAYGRISGICPS
DEDAERTFKHCDLDNSGKLDVDEMTRQHLGFWYTLDPNADGLYGNFVP
Run BLAST on NCBI

transcript from alignment at scaffold_219:132702..133491

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052749 ID=TCONS_00052749|Name=TCONS_00052749|organism=Clytia hemisphaerica|type=transcript|length=790bp|location=Sequence derived from alignment at scaffold_219:132702..133491 (Clytia hemisphaerica)
ATCTAAGCATTAGCTAGCAGATCATCACATTTGCAATCCAAAGCAAATCT
CAAAATGGCCGACACTGCTTCAAAATATGCTGTCAAACTCAAGACCAACT
TCGATGATCCAAAATGGGTAAACCGACACAGATTTATGTTCAACTTTTTG
GACATCAACGGTGACGGAAAAATCACTTTGGATGAAATTGTCTCCAAAGC
TTCGGATGACATTTGCGCCAAACTCGGAGCTACTCCAGCTCAAACAAAAC
GTCATCAAGATGCTGTTGAGAACTTTTTCAAGAAGATCGGTATGGATTAT
GGCAAAAAAGTCGAATTCCCACAGTTCGTTGAAGGGTGGAAGAACTTGGC
CACACACGATTTGAAACTCTGGTCCCAAAACAAGAAATCTTTGATTCGCG
ACTGGGGAGAAGCTGTCTTCGACATTTTCGACAAAGACGGTTCAGGCTCG
ATCAGTTTGGACGAATGGAAAGCTTACGGGAGAATCTCTGGAATCTGTCC
ATCAGACGAAGACGCCGAACGTACATTCAAACATTGCGATTTGGACAACA
GTGGCAAACTTGATGTTGATGAGATGACCAGACAACATTTGGGATTCTGG
TACACCTTGGACCCCAATGCTGACGGACTTTATGGCAACTTTGTTCCCTA
AACACTTTTAGATTtgtcaaaatcatttttatttcgctattattttgcta
aaatcagtcttaattttcattatttttttttgtaaattgtgAATAAATAG
AATAGCAAACCTAAAAGCTTTTTAATGTTGATATTCCACA

Coding sequence (CDS) from alignment at scaffold_219:132702..133491

>TCONS_00052749 ID=TCONS_00052749|Name=TCONS_00052749|organism=Clytia hemisphaerica|type=CDS|length=597bp|location=Sequence derived from alignment at scaffold_219:132702..133491 (Clytia hemisphaerica)
ATGGCCGACACTGCTTCAAAATATGCTGTCAAACTCAAGACCAACTTCGA
TGATCCAAAATGGGTAAACCGACACAGATTTATGTTCAACTTTTTGGACA
TCAACGGTGACGGAAAAATCACTTTGGATGAAATTGTCTCCAAAGCTTCG
GATGACATTTGCGCCAAACTCGGAGCTACTCCAGCTCAAACAAAACGTCA
TCAAGATGCTGTTGAGAACTTTTTCAAGAAGATCGGTATGGATTATGGCA
AAAAAGTCGAATTCCCACAGTTCGTTGAAGGGTGGAAGAACTTGGCCACA
CACGATTTGAAACTCTGGTCCCAAAACAAGAAATCTTTGATTCGCGACTG
GGGAGAAGCTGTCTTCGACATTTTCGACAAAGACGGTTCAGGCTCGATCA
GTTTGGACGAATGGAAAGCTTACGGGAGAATCTCTGGAATCTGTCCATCA
GACGAAGACGCCGAACGTACATTCAAACATTGCGATTTGGACAACAGTGG
CAAACTTGATGTTGATGAGATGACCAGACAACATTTGGGATTCTGGTACA
CCTTGGACCCCAATGCTGACGGACTTTATGGCAACTTTGTTCCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033352XLOC_033352Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052749-proteinTCONS_00052749-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052749-exon-scaffold_219-1491911889:132702..133491TCONS_00052749-exon-scaffold_219-1491911889:132702..133491Clytia hemisphaericaexon
TCONS_00052749-exon-scaffold_219-1510915933:132702..133491TCONS_00052749-exon-scaffold_219-1510915933:132702..133491Clytia hemisphaericaexon
TCONS_00052749-exon-scaffold_219-1575043694:132702..133491TCONS_00052749-exon-scaffold_219-1575043694:132702..133491Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_219supercontigscaffold_219:132702..133491 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
101.171	100.982	137.79	158.748	0	0.204775	0.106111	0.13499	0	0.245367	0	0	0.479718	0.626706	0.573332	0.443099	88.7985	64.7786	0	0	1226.21	884.218	660.866	874.596	867.854	333.843	0.802022	0.913566	6.74037	6.39165
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052749 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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