TCONS_00052748 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052748
Unique NameTCONS_00052748
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length717

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052748 ID=TCONS_00052748|Name=TCONS_00052748|organism=Clytia hemisphaerica|type=transcript|length=717bp
CTGAACACAGGCAAGTGCAATAGCTAAAAGATCAATACTTTCTGAAGCTT
TCAGAAATCTTTGACAACCATGGCTCAACAAGAAACTGGATCAAAATACG
CCGTCAAACTTAAACCCGATTTTAACAATCCAAAATGGATCAACCGTCAT
AGATTTATGTTCAACTTTTTGGACATCAACGGTAACGGAAAAATCACTTT
GGATGAGATCGTGTCCAAAGCTTCGGATGATATTTGCGCCAAATTGAACG
CATCACCAGAACAAACCCAACGCCATCAAGATGCTGTTGAAGCTTTCTTC
AAAGCCATTGGTATGGATTATGGAAAAGAAGTGGAATTCCCAGAATTCCT
TGAAGGATGGAAACGACTTGCCACCAACGATTTAAAATTGTGGTCCCAAA
ACAAGACCACCTTGATTCGCCGATGGGGAGATGTTGTGTTCGACATTTTC
GATAAAGATGGAAGCGGTACAATCAGTTTGGACGAATGGAAAGCTTATGG
AAGAGTCTCTGGAATCTGTGCATCAGACGCAGACGCCGAGCAGACCTTCA
AACATTGCGATTTGGACAACAGTGGCAAACTTGATGTTGATGAGATGACC
AGACAACATTTGGGATTCTGGTACACCTTGGATCCACAAGCTGATGGTCT
CTATGGCAACTTTGTTCCCTAAACTTCTTTATATGACATCTATACATAAA
TGCATGTAAAATATTAT
Run BLAST on NCBI

protein sequence of TCONS_00052748-protein

>TCONS_00052748-protein ID=TCONS_00052748-protein|Name=TCONS_00052748-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MAQQETGSKYAVKLKPDFNNPKWINRHRFMFNFLDINGNGKITLDEIVSK
ASDDICAKLNASPEQTQRHQDAVEAFFKAIGMDYGKEVEFPEFLEGWKRL
ATNDLKLWSQNKTTLIRRWGDVVFDIFDKDGSGTISLDEWKAYGRVSGIC
ASDADAEQTFKHCDLDNSGKLDVDEMTRQHLGFWYTLDPQADGLYGNFVP
Run BLAST on NCBI

transcript from alignment at scaffold_219:119601..120317

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052748 ID=TCONS_00052748|Name=TCONS_00052748|organism=Clytia hemisphaerica|type=transcript|length=717bp|location=Sequence derived from alignment at scaffold_219:119601..120317 (Clytia hemisphaerica)
ATAATATTTTACATGCATTTATGTATAGATGTCATATAAAGAAGTTTAGG
GAACAAAGTTGCCATAGAGACCATCAGCTTGTGGATCCAAGGTGTACCAG
AATCCCAAATGTTGTCTGGTCATCTCATCAACATCAAGTTTGCCACTGTT
GTCCAAATCGCAATGTTTGAAGGTCTGCTCGGCGTCTGCGTCTGATGCAC
AGATTCCAGAGACTCTTCCATAAGCTTTCCATTCGTCCAAACTGATTGTA
CCGCTTCCATCTTTATCGAAAATGTCGAACACAACATCTCCCCATCGGCG
AATCAAGGTGGTCTTGTTTTGGGACCACAATTTTAAATCGTTGGTGGCAA
GTCGTTTCCATCCTTCAAGGAATTCTGGGAATTCCACTTCTTTTCCATAA
TCCATACCAATGGCTTTGAAGAAAGCTTCAACAGCATCTTGATGGCGTTG
GGTTTGTTCTGGTGATGCGTTCAATTTGGCGCAAATATCATCCGAAGCTT
TGGACACGATCTCATCCAAAGTGATTTTTCCGTTACCGTTGATGTCCAAA
AAGTTGAACATAAATCTATGACGGTTGATCCATTTTGGATTGTTAAAATC
GGGTTTAAGTTTGACGGCGTATTTTGATCCAGTTTCTTGTTGAGCCATGG
TTGTCAAAGATTTCTGAAAGCTTCAGAAAGTATTGATCTTTTAGCTATTG
CACTTGCCTGTGTTCAG

Coding sequence (CDS) from alignment at scaffold_219:119601..120317

>TCONS_00052748 ID=TCONS_00052748|Name=TCONS_00052748|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at scaffold_219:119601..120317 (Clytia hemisphaerica)
TTAGGGAACAAAGTTGCCATAGAGACCATCAGCTTGTGGATCCAAGGTGT
ACCAGAATCCCAAATGTTGTCTGGTCATCTCATCAACATCAAGTTTGCCA
CTGTTGTCCAAATCGCAATGTTTGAAGGTCTGCTCGGCGTCTGCGTCTGA
TGCACAGATTCCAGAGACTCTTCCATAAGCTTTCCATTCGTCCAAACTGA
TTGTACCGCTTCCATCTTTATCGAAAATGTCGAACACAACATCTCCCCAT
CGGCGAATCAAGGTGGTCTTGTTTTGGGACCACAATTTTAAATCGTTGGT
GGCAAGTCGTTTCCATCCTTCAAGGAATTCTGGGAATTCCACTTCTTTTC
CATAATCCATACCAATGGCTTTGAAGAAAGCTTCAACAGCATCTTGATGG
CGTTGGGTTTGTTCTGGTGATGCGTTCAATTTGGCGCAAATATCATCCGA
AGCTTTGGACACGATCTCATCCAAAGTGATTTTTCCGTTACCGTTGATGT
CCAAAAAGTTGAACATAAATCTATGACGGTTGATCCATTTTGGATTGTTA
AAATCGGGTTTAAGTTTGACGGCGTATTTTGATCCAGTTTCTTGTTGAGC
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033351XLOC_033351Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052748-proteinTCONS_00052748-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052748-exon-scaffold_219-1491911889:119601..120317TCONS_00052748-exon-scaffold_219-1491911889:119601..120317Clytia hemisphaericaexon
TCONS_00052748-exon-scaffold_219-1510915933:119601..120317TCONS_00052748-exon-scaffold_219-1510915933:119601..120317Clytia hemisphaericaexon
TCONS_00052748-exon-scaffold_219-1575043694:119601..120317TCONS_00052748-exon-scaffold_219-1575043694:119601..120317Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_219supercontigscaffold_219:119601..120317 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
48.4407	49.2491	64.7067	40.0079	0.66852	0.665514	1.4652	1.37696	7.36417	3.37123	2.86989	4.10859	426.169	370.638	460.654	453.486	29.5401	35.6179	0.358476	3.25034	33.0765	32.4741	27.803	43.5477	16.2728	22.9611	1.3852	1.35988	3.88747	6.4426
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052748 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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