TCONS_00052744 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052744
Unique NameTCONS_00052744
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length200

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052744 ID=TCONS_00052744|Name=TCONS_00052744|organism=Clytia hemisphaerica|type=transcript|length=200bp
GAGCGATGAAACGCGAAGATCCCCCTTCCCTAAAACGATGCATGATTGTT
TGAGTTAAGAAAGAATGTCGAGAAAGAATAAGATATTTATCCTAAAATTC
ATCATAAGTTTCTAAAAAAGTTACTTCTCTACTGATTTACTGGAATGATG
ACAAGAATAGGATATTCAAACCATCACCAACGGCTTTGAAAGAGTTCATC
Run BLAST on NCBI

transcript from alignment at scaffold_219:105952..106151

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052744 ID=TCONS_00052744|Name=TCONS_00052744|organism=Clytia hemisphaerica|type=transcript|length=200bp|location=Sequence derived from alignment at scaffold_219:105952..106151 (Clytia hemisphaerica)
GATGAACTCTTTCAAAGCCGTTGGTGATGGTTTGAATATCCTATTCTTGT
CATCATTCCAGTAAATCAGTAGAGAAGTAACTTTTTTAGAAACTTATGAT
GAATTTTAGGATAAATATCTTATTCTTTCTCGACATTCTTTCTTAACTCA
AACAATCATGCATCGTTTTAGGGAAGGGGGATCTTCGCGTTTCATCGCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033347XLOC_033347Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052744-exon-scaffold_219-1491911889:105952..106151TCONS_00052744-exon-scaffold_219-1491911889:105952..106151Clytia hemisphaericaexon
TCONS_00052744-exon-scaffold_219-1510915933:105952..106151TCONS_00052744-exon-scaffold_219-1510915933:105952..106151Clytia hemisphaericaexon
TCONS_00052744-exon-scaffold_219-1575043694:105952..106151TCONS_00052744-exon-scaffold_219-1575043694:105952..106151Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_219supercontigscaffold_219:105952..106151 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.66594	1.62456	0	0	40.4391	30.1802	57.8295	64.165	158.636	144.329	60.7616	68.7895	35.4549	36.8203	56.7586	28.425	27.5136	32.046	33.6477	50.0352	0	0	0	5.20978	3.5773	4.78898	4.56868	0	5.5472	5.65172
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052744 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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