|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052734 ID=TCONS_00052734|Name=TCONS_00052734|organism=Clytia hemisphaerica|type=transcript|length=1184bp
ATCTAAGCATTAGCTAGCAGATCATCACATTTGCAATACAAAGCAAATCT
TCAAATCTCAAAATGGCCGACACTGCTTCAAAATACGCGGTCAAACTCAA
GACCAACTTCGATGACCCAAAATGGGTAAACCGTCACAGATTCATGTTCA
ACTTTTTGGACATTAACGGCAACGGAAAAATCACTTTGGATGAAATTGTC
TCCAAAGCTTCGGATGACATTTGCGCCAAACTCGGAGCTACTCCAGCTCA
AACAAAACGTCATCAAGATGCTATTGAGaactttttcaagaaaatcggTA
TGGCTTATGGCAAAGAAGTCGAATTCCCACAGTTCGTTGAAGGGTGGAAG
AATTTGGCCACACACGATTTGAAACTCTGGTCCCAAAACAAGAAATCTTT
GATTCGCGACTGGGGAGAAGCTGTTTTCGACATTTTCGACAAAGACGGTT
CAGGTTCGATCAGTTTGGACGAATGGAAAGCTTACGGAAGAATCTCCGGA
ATTTGTCCATCAGACGAAGACGCCGAGAAGACCTTCAAACATTGCGATTT
GGACAACAGTGGCAAACTTGATGTTGATGAGATGACCAGACAACATCAAG
TTTGCCACTGTTGTCCAAATCGCAATGTTTGAAGGTCTGCTCGGCGTCCG
CGTCTGATGCACAGATTCCAGAGACTCTTCCATAGGCCTTCCATTCGTCC
AAACTGATTGTACCGCTTCCATCTTTATCAAAAATGTCGAACACAACGTC
TCCCCATCGACGAATCAAGGTGGTCTTGTTTTGGGACCACAATTTCAAAT
CGTTGGTAGCAAGTCGTTTCCATCCTTCAAGGAATTCTGGGAATTCAACT
TCTTTTCCGTAATCCATACCAATGGCTTTGAAGAAAGCTTCAACAGCATC
TTGATGGCGTTGGGTTTGTTCTGGTGATGCGTTCAATTTGGCGCAAATAT
CATCCGAAGCTTTGGAGACAATTTCATCCAATGTGATTTTTCCGTTACCG
TTGATGTCCAAAAAATTGAACATGAATCTATGACGGTTGATCCATTTTGG
ATTATTAAAATCGGGTTTAAGTTTGACGGCGTATTTGGATCCCGTTTCTT
GTTGAGCCATGGTTGTCAAAGATTGTTTCTAAAAAGCTTCAGAAAGTATT
GATCTTTTAGCTATTGCACTTGGTTGTGTTCAGC Run BLAST on NCBI transcript from alignment at scaffold_219:123293..127613- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052734 ID=TCONS_00052734|Name=TCONS_00052734|organism=Clytia hemisphaerica|type=transcript|length=4321bp|location=Sequence derived from alignment at scaffold_219:123293..127613- (Clytia hemisphaerica)
ATCTAAGCATTAGCTAGCAGATCATCACATTTGCAATACAAAGCAAATCT
TCAAATCTCAAAATGGCCGACACTGCTTCAAAATACGCGGTCAAACTCAA
GACCAACTTCGATGACCCAAAATGGGTAAACCGTCACAGATTCATGTTCA
ACTTTTTGGACATTAACGGCAACGGAAAAATCACTTTGGATGAAATTGTC
TCCAAAGCTTCGGATGACATTTGCGCCAAACTCGGAGCTACTCCAGCTCA
AACAAAACGTCATCAAGATGCTATTGAGAACTTTTTCAAGAAAATCGGTA
TGGCTTATGGCAAAGAAGTCGAATTCCCACAGTTCGTTGAAGGGTGGAAG
AATTTGGCCACACACGATTTGAAACTCTGGTCCCAAAACAAGAAATCTTT
GATTCGCGACTGGGGAGAAGCTGTTTTCGACATTTTCGACAAAGACGGTT
CAGGTTCGATCAGTTTGGACGAATGGAAAGCTTACGGAAGAATCTCCGGA
ATTTGTCCATCAGACGAAGACGCCGAGAAGACCTTCAAACATTGCGATTT
GGACAACAGTGGCAAACTTGATGTTGATGAGATGACCAGACAACATTTGG
GATTCTGGTACACCCTGGACCCCAATGCTGATGGACTCTATGGCAACTTC
GTTCCCTAAACATCTTATCATGCTAACTGATACATCTCTCTTCAAAAACT
ATTTTCACATTTTTATTACGCCAAAATCTGTAGATTGTATTTGACTTTCA
TTTCGTAGTAACGAAGAAAATACTTGTACTGCATGTGTTCAATTTATCGT
TATGAGTTTTTTCAATGACACCTTTCGTATAAGAACTATGACAGGTTGTC
GGCTGTGTTCCTTACCTAGGCATAAATATTCCTTGTTGTGAAATCGACAG
ACAAATTCTAAATCATTTTTATTTTAGCTCAATTGAGCTAATTGCTCTTA
AGTAAAATATAAAAGACCCTCAGTGTTGTAGAAGTATATTATAAAGCCAA
AGCCTTTTCTCGCAGACATTGCCATTCCTCTACTGTTTCTTAAGTCTTCG
AGTATCTTCCTATTTTTTACTAGGGGAAGCATCTTGGGAAAGCATCTTAA
AATCTCAAGACTGAAAAGTGCTATGACCATGAAATTTTAACCAGTGATAG
ATAATGATGTGAGAATTTGGCTGCAAGCTTGTATTATCAATACCTAACAT
ACTTGTCGTGATAAAAATTTCAGAAGTTATCACAAAAGTTTTTTTAAGGG
GCCTCTTTGCCCCCCCCCCAAGATACTCGAGGAGTTAAGAACACTTGAAT
GTAACGGATATTTAGTGACTAGCGAGTTAAGTATATTGGAGGACATCGAG
GGTGACGGTAGTGAAGTCGACACAAAACAGTTGTTCATTGTTGATAGTTG
ATGTACGGCTCTTTATCGCCGTTGCTTATCTAAACAGACGACGGTATTTT
GGTGTTTTTTACCGTCGTCGAGCAAAGTGGACGGCGAATTCGGCGACATG
TGAACTTCGATTTATCTCAAATACATAAACTTGCTATTACTAGTCAGTCC
CCTACCCTGTCTCGGGTAAGGAATGCACTGTACTATCTTTTCTCTTTGGT
GTTCTACCATGTTCTACAGCCAAACCGTAGAAGAATATCGCGCCTAAAAA
AATTTCTTAGCTATGAGTGAGCTTAAAAATTTGCATTACTTCTTATGAGG
GTCAGATTTTTACGAAAAGTGTAATTTTCTTCTTCATCAGCCTTATCGGT
GTCCCGGGGGGGTACTAGGGTTGCGAGCTGACGGGGGAGTGCCGTCCGAC
TTTCGAACTTTGGACCCTTACCGGGACTAAAAAGGAGAAAACAAAGGAAA
ATTTTGGGAATTTTACGACCCTTAACGGGGACAAATTTGACCAATTTTGA
CCGGATTTCGATCTTTCAGGGGGTAAAAAGTTGAAGTTTTCTTTCCCTTA
GTGGGACTGAAATTTGATTTTCTGATTTTTCCGACCCTTAGCGGGACTTG
TTCAAAAAAGGTACCCTTAAGGGCGCCACATACCGTACCCTCCATTTGCC
TAAGTACCCCCTCCCCCCCGGATCGGTGTTAGGATCATTTAGCGATGTTC
CCTAAAAGGAGATCTTAAGAACTTGAAAACACGACATCGAGTTTTCCTCG
ATAATTAACATAGTTTTTCAACGTTACTTAAATGTTTTAGACTAGACGCT
AGTAAAGTTGAACGTCAAAAACAATAAAACTCTTTAAAATGTCAAAAAAA
AAACGTTTTGGTGTTTTATAGCCAGCTCCTGAACATCGCATAGCGTTTTT
ATTACAACTATATGGTCAGTTTCGAAAAGGCTGATTTCTGGGCCTGTATT
CAAGTGAGGATTTCACGTAACTAAAGCCCTTGCAAGGGAGTTTTTGTACA
GCAATAGAAAAGTGACAAATGCAATGCTTCACCTCTAGGAAAAGTAGCCT
AATCGTAATTTATTCTACATAAGGCTAGCAAAAAACGAGTTGATAATTGA
CTTGGTATTTTTATGTTTTTTTATTGATTTTTTTTTAATTTACTCATCTA
AGAATTTGTGTCGCCGTTGCCCCTAGGACGACATTGTGTAAAAGTGCCAT
GTTCTTCAAATAAACCTAAAATGGGCCTTTCAAGTCTCCTTTGTACCGTT
GAGAGGCCTCGTTATTGCCAAATGAAAATAAACACTTTTTCAGTGACGTC
AAAATGTTTTGGCTTGACCAGTTTTTCCACACATGTATCTTGAGTGAATC
TCTACGGTGTTTTATTCCTTTGTTGTGGCTCGTGGACAACTTAAAACACT
AAAACGAGACTGGAAATTTTTGCGTGAATGGAGACGATTTAACTTAATTT
TTACATAAATTTCCACTTTCTCAAAATGTGTAATTTTTTGTCCTAGGGAT
GAGCTTTAGTATCAAAAACCTTTTAATTTACTTATTGATTTTACAATTTG
GCCTATGAAAGTTGCGAAAGAAACCTAATTTAAGCGCCACTGACAGTTAC
TAACCTGCTCATGGCCCCCGTCACCGGGGGGGCCAGGGGGGCCATGGCCC
CTAACCCAACCCACCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAATC
TTATATATACCGTTTAGAGGGGTGAAATAAGGGCAAAAAGTCGAAAATTT
TCTTCGTCGCCCAACCATGGTGGGCGACATATTTTTTTTGGCCCCTTCAA
TTCGATGCGCACGCCGGGGGCCATGCTGCTCAAACTTCTTGTTTCAAAGA
TGAACAATACAACGAAAGGATACAAATAGTTGAACTAAGTAAGGATCATA
GATACAAAAAATCGAACTTTAATCATTTTTCGGGCTATTGTTTGTTTGGT
AGTTCTTGTTCATTGTGAAACAAAAAACAAATCAAAGATTTTCTGGTTGT
AAGGCGTGTGAGTATATTTGATATAATGATTGTGTAATGGTCATATTTTA
CAATTATGTATATGTTTTGATGTATAGGTTGTTGATGCATCCGTTTAGGG
AACAAAGTTGCCATAGAGACCATCAGCTTGTGGATCCAAGGTGTACCAGA
ATCCCAAATGTTGTCTGGTCATTTCATCGACATCAAGTTTGCCACTGTTG
TCCAAATCGCAATGTTTGAAGGTCTGCTCGGCGTCCGCGTCTGATGCACA
GATTCCAGAGACTCTTCCATAGGCCTTCCATTCGTCCAAACTGATTGTAC
CGCTTCCATCTTTATCAAAAATGTCGAACACAACGTCTCCCCATCGACGA
ATCAAGGTGGTCTTGTTTTGGGACCACAATTTCAAATCGTTGGTAGCAAG
TCGTTTCCATCCTTCAAGGAATTCTGGGAATTCAACTTCTTTTCCGTAAT
CCATACCAATGGCTTTGAAGAAAGCTTCAACAGCATCTTGATGGCGTTGG
GTTTGTTCTGGTGATGCGTTCAATTTGGCGCAAATATCATCCGAAGCTTT
GGAGACAATTTCATCCAATGTGATTTTTCCGTTACCGTTGATGTCCAAAA
AATTGAACATGAATCTATGACGGTTGATCCATTTTGGATTATTAAAATCG
GGTTTAAGTTTGACGGCGTATTTGGATCCCGTTTCTTGTTGAGCCATGGT
TGTCAAAGATTGTTTCTAAAAAGCTTCAGAAAGTATTGATCTTTTAGCTA
TTGCACTTGGTTGTGTTCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052734-exon-scaffold_219-1575043694:127020..127613 | TCONS_00052734-exon-scaffold_219-1575043694:127020..127613 | Clytia hemisphaerica | exon |
| TCONS_00052734-exon-scaffold_219-1575043694:123293..123882 | TCONS_00052734-exon-scaffold_219-1575043694:123293..123882 | Clytia hemisphaerica | exon |
| TCONS_00052734-exon-scaffold_219-1510915933:127020..127613 | TCONS_00052734-exon-scaffold_219-1510915933:127020..127613 | Clytia hemisphaerica | exon |
| TCONS_00052734-exon-scaffold_219-1510915933:123293..123882 | TCONS_00052734-exon-scaffold_219-1510915933:123293..123882 | Clytia hemisphaerica | exon |
| TCONS_00052734-exon-scaffold_219-1491911889:127020..127613 | TCONS_00052734-exon-scaffold_219-1491911889:127020..127613 | Clytia hemisphaerica | exon |
| TCONS_00052734-exon-scaffold_219-1491911889:123293..123882 | TCONS_00052734-exon-scaffold_219-1491911889:123293..123882 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_219 | supercontig | scaffold_219:123293..127613 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005509 |
calcium ion binding |
Blast
The following BLAST results are available for this feature:
|
