TCONS_00052674 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052674
Unique NameTCONS_00052674
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1819

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052674 ID=TCONS_00052674|Name=TCONS_00052674|organism=Clytia hemisphaerica|type=transcript|length=1819bp
GTAGTGGATGAATTCATCCTCATGTTTAGTTGGTGGGTATAAAAGACAGC
ATAATATTTGTTTTGAGTATGTTGTGGGACAAAAATTGTGTGTTTGTTGT
TTGCTTTTGTAGAGGTTCCTGTTGTCAAATTATGACATGGTTTTAAGCAG
GTCATTTTTAAGCAGTCTAATCTCTTTCCTTGTAATTTCTGTTGTGTATG
ACTGAACAAAGAGACTTTGGTGGGAGTTTTCGATCAATACATATATGTAG
ATCGTTTTTGAAGTTCTTTATAAAAACGACACGTTTTGGCTACATTTGAA
AGATAATCTCGAAGACTTAACTTTAAAATAGAGGTAGTGATTATAGATCG
TCATGAGCGTGTGAAAAAGGCGTAAGGTTATTGTTAAGACATCAATTAAA
ATCACCGTTGTCCTAAGACGCAAAATTGACTACAAACACACCAGTTTGTC
AATAACATAACAGTTAAAGGAGGTGTAGAGACagcttaattttttttctc
gactACTACTACtataattgataaaaaagaactttttagaGGTATTGTGA
CTTTAAGTTGAAAGAAAACGCGACTATAGATGAtgtttgattgtttcaat
tgacttcgTCTCTGTATGTTGCTACCATTATGTCACATCCTTATTTAAGA
GCGCGTGATTTGGTCGCGTCTATATAAAGGAGTTTGTACTATCGGTAGAT
GCCAAAGTTTGTTTCTGTCCATTGACACATTCGAAGTATAGAGTGGTTTC
AGTAAAGTaccatcaaaataaaattggattgatttttataatgtttttgt
ttacatcTCTTTTTGTAGATGAATttatatgaaaacaaaaaagtattaAT
GGCATTCACAACTTGTGTTTTACTGAGTATGTGGTTACCTATGGTGAGTG
CAACCAGGGAAATGAAGCCGAAAGATGCAGTCAAGTTATGTGGTCAAGAT
TTTATCAAGGTGTGGACAACCATCTGTAaattaaaacaaatgaaaaatgc
ACGTGGTCGAAAAAGAAGAAGTATAGAAGaaccatCAAGTTTATTGAAAC
TACGAACGATCGACTTGAAGGAAGAACTAATAGCACCAGAGAATGcgaaa
caatttttgaaatcattgcaTAATCGAAGGAGAAGAAGATCACTGACTGG
AGATTTGGATAATGGAAACGAAGAATGTTGTAATGAGAGTTGTACATTTG
GTGAAATTGCTGAATACTCATGTTAGTTTGTTGTTAAAGAATGTTTGAAT
TTACAGACCGATGCAAATTAATTATGGTAATAGTGACTGGACTGTTGATT
tattggaacagtagtttctcTTGGACAATCGATGTCAATTTTGAGCATAT
GATAAAATAAGGTAACAGCCCGTACATTCAAATCACGATGAACCCTTTGA
AATAGCCATGAACTCTTGTGCGGAGGATTGATACGCTAGAGTTGATAGAA
ACAATAAGCCCTACAGGAGGTTATCACTTGTGAtagaaaaacgaaaatga
aattgaaCGCATATACACATAAAAAGTACCTCCCATTTGCACcaataaaa
aagaagacaaaaacGATGTTTAAAGATTGCTGTgagaaaacatattttta
gGTAGAAAAATTTTATAGTTATTTTAAAAGATGAAGATTATACATATTat
ataaattatgaaaaaaagtaTTATAATATTACCTTTTATTGTTATGAGAT
GAATATGAAAATAGTCTATCAACGCTATATATTATATagaagatttattt
attttgttttttgtagtATATTGTAACATATTTGAAATTTGGATTTATCA
AGACTTGTATATACCTAAA
Run BLAST on NCBI

protein sequence of TCONS_00052674-protein

>TCONS_00052674-protein ID=TCONS_00052674-protein|Name=TCONS_00052674-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MNLYENKKVLMAFTTCVLLSMWLPMVSATREMKPKDAVKLCGQDFIKVWT
TICKLKQMKNARGRKRRSIEEPSSLLKLRTIDLKEELIAPENAKQFLKSL
HNRRRRRSLTGDLDNGNEECCNESCTFGEIAEYSC
Run BLAST on NCBI

transcript from alignment at scaffold_218:447967..450170-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052674 ID=TCONS_00052674|Name=TCONS_00052674|organism=Clytia hemisphaerica|type=transcript|length=2204bp|location=Sequence derived from alignment at scaffold_218:447967..450170- (Clytia hemisphaerica)
GTAGTGGATGAATTCATCCTCATGTTTAGTTGGTGGGTATAAAAGACAGC
ATAATATTTGTTTTGAGTATGTTGTGGGACAAAAATTGTGTGTTTGTTGT
TTGCTTTTGTAGAGGTTCCTGTTGTCAAATTATGACATGGTTTTAAGCAG
GTCATTTTTAAGCAGTCTAATCTCTTTCCTTGTAATTTCTGTTGTGTATG
ACTGAACAAAGAGACTTTGGTGGGAGTTTTCGATCAATACATATATGTAG
ATCGTTTTTGAAGTTCTTTATAAAAACGACACGTTTTGGCTACATTTGAA
AGATAATCTCGAAGACTTAACTTTAAAATAGAGGTAGTGATTATAGATCG
TCATGAGCGTGTGAAAAAGGCGTAAGGTTATTGTTAAGACATCAATTAAA
ATCACCGTTGTCCTAAGACGCAAAATTGACTACAAACACACCAGTTTGTC
AATAACATAACAGTTAAAGGAGGTGTAGAGACAGCTTAATTTTTTTTCTC
GACTACTACTACTATAATTGATAAAAAAGAACTTTTTAGAGGTATTGTGA
CTTTAAGTTGAAAGAAAACGCGACTATAGATGATGTTTGATTGTTTCAAT
TGACTTCGTCTCTGTATGTTGCTACCATTATGTCACATCCTTATTTAAGA
GCGCGTGATTTGGTCGCGTCTATATAAAGGAGTTTGTACTATCGGTAGAT
GCCAAAGTTTGTTTCTGTCCATTGACACATTCGAAGTATAGAGTGGTTTC
AGTAAAGTACCATCAAAATAAAATTGGATTGATTTTTATAATGTTTTTGT
TTACATCTCTTTTTGTAGATGAATTTATATGAAAACAAAAAAGTATTAAT
GGCATTCACAACTTGTGTTTTACTGAGTATGTGGTTACCTATGGTGAGTG
CAACCAGGGAAATGAAGCCGAAAGATGCAGTCAAGTTATGTGGTCAAGAT
TTTATCAAGGTGTGGACAACCATCTGTAAATTAAAACAAATGAAAAATGC
ACGTGGTCGAAAAAGAAGAAGTATAGAAGGTATAATATTTTTTCGATGAT
TTTTCTATGTCGTGTAAACCTTGTCAATACATTCAAAGTTTTGGGTCTTT
TACTTCCAGCTGTAATAGAAAAATTAAATTCTGCAATCATGGAAAATAAT
TTATAGTCTAATAAATCATTGTTGTCAACATTAAAACTGAGAGACTAGTT
TGTTGCGAAAATTTAAATCAATTCAAATTTTTTTTTAAGAACCATCAAGT
TTATTGAAACTACGAACGATCGACTTGAAGGAAGAACTAATAGCACCAGA
GAATGCGAAACAATTTTTGAAATCATTGCATAATCGAAGGAGAAGAAGAT
CACTGACTGGAGATTTGGATAATGGAAACGAAGAATGTTGTAATGAGAGT
TGTACATTTGGTGAAATTGCTGAATACTCATGTTAGTTTGTTGTTAAAGA
ATGTTTGAATTTACAGACCGATGCAAATTAATTATGGTAATAGTGACTGG
ACTGTTGATTTATTGGAACAGTAGTTTCTCTTGGACAATCGATGTCAATT
TTGAGCATATGATAAAATAAGGTGAGCGATAAGTTACTCTTAAATATTTT
TTTTGTAAGATTTCCAAGATTTTTTTTGAAGTTTTGATATTTTAGATGCT
TGAATTATAAATAATTCCCAAAGAGAAACTTGAAGAATAATCGGCAACTC
CTTCATTAATTAATATTAATAATCATATTTTAATCTAATTTTTCAGGTAA
CAGCCCGTACATTCAAATCACGATGAACCCTTTGAAATAGCCATGAACTC
TTGTGCGGAGGATTGATACGCTAGAGTTGATAGAAACAATAAGCCCTACA
GGAGGTTATCACTTGTGATAGAAAAACGAAAATGAAATTGAACGCATATA
CACATAAAAAGTACCTCCCATTTGCACCAATAAAAAAGAAGACAAAAACG
ATGTTTAAAGATTGCTGTGAGAAAACATATTTTTAGGTAGAAAAATTTTA
TAGTTATTTTAAAAGATGAAGATTATACATATTATATAAATTATGAAAAA
AAGTATTATAATATTACCTTTTATTGTTATGAGATGAATATGAAAATAGT
CTATCAACGCTATATATTATATAGAAGATTTATTTATTTTGTTTTTTGTA
GTATATTGTAACATATTTGAAATTTGGATTTATCAAGACTTGTATATACC
TAAA

Coding sequence (CDS) from alignment at scaffold_218:447967..450170-

>TCONS_00052674 ID=TCONS_00052674|Name=TCONS_00052674|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at scaffold_218:447967..450170- (Clytia hemisphaerica)
AACCATCAAGTTTATTGAAACTACGAACGATCGACTTGAAGGAAGAACTA
ATAGCACCAGAGAATGCGAAACAATTTTTGAAATCATTGCATAATCGAAG
GAGAAGAAGATCACTGACTGGAGATTTGGATAATGGAAACGAAGAATGTT
GTAATGAGAGTTGTACATTTGGTGAAATTGCTGAATACTCATGTTAGATG
AATTTATATGAAAACAAAAAAGTATTAATGGCATTCACAACTTGTGTTTT
ACTGAGTATGTGGTTACCTATGGTGAGTGCAACCAGGGAAATGAAGCCGA
AAGATGCAGTCAAGTTATGTGGTCAAGATTTTATCAAGGTGTGGACAACC
ATCTGTAAATTAAAACAAATGAAAAATGCACGTGGTCGAAAAAGAAGAAG
TATAGAAGAACCATCAAGTTTATTGAAACTACGAACGATCGACTTGAAGG
AAGAACTAATAGCACCAGAGAATGCGAAACAATTTTTGAAATCATTGCAT
AATCGAAGGAGAAGAAGATCACTGACTGGAGATTTGGATAATGGAAACGA
AGAATGTTGTAATGAGAGTTGTACATTTGGTGAAATTGCTGAATACTCAT
GTTAGATGAATTTATATGAAAACAAAAAAGTATTAATGGCATTCACAACT
TGTGTTTTACTGAGTATGTGGTTACCTATGGTGAGTGCAACCAGGGAAAT
GAAGCCGAAAGATGCAGTCAAGTTATGTGGTCAAGATTTTATCAAGGTGT
GGACAACCATCTGTAAATTAAAACAAATGAAAAATGCACGTGGTCGAAAA
AGAAGAAGTATAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033279XLOC_033279Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052674-proteinTCONS_00052674-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052674-exon-scaffold_218-1575043694:449142..450170TCONS_00052674-exon-scaffold_218-1575043694:449142..450170Clytia hemisphaericaexon
TCONS_00052674-exon-scaffold_218-1575043694:448600..448931TCONS_00052674-exon-scaffold_218-1575043694:448600..448931Clytia hemisphaericaexon
TCONS_00052674-exon-scaffold_218-1575043694:447967..448424TCONS_00052674-exon-scaffold_218-1575043694:447967..448424Clytia hemisphaericaexon
TCONS_00052674-exon-scaffold_218-1510915933:449142..450170TCONS_00052674-exon-scaffold_218-1510915933:449142..450170Clytia hemisphaericaexon
TCONS_00052674-exon-scaffold_218-1510915933:448600..448931TCONS_00052674-exon-scaffold_218-1510915933:448600..448931Clytia hemisphaericaexon
TCONS_00052674-exon-scaffold_218-1510915933:447967..448424TCONS_00052674-exon-scaffold_218-1510915933:447967..448424Clytia hemisphaericaexon
TCONS_00052674-exon-scaffold_218-1491911889:449142..450170TCONS_00052674-exon-scaffold_218-1491911889:449142..450170Clytia hemisphaericaexon
TCONS_00052674-exon-scaffold_218-1491911889:448600..448931TCONS_00052674-exon-scaffold_218-1491911889:448600..448931Clytia hemisphaericaexon
TCONS_00052674-exon-scaffold_218-1491911889:447967..448424TCONS_00052674-exon-scaffold_218-1491911889:447967..448424Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:447967..450170 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0440717	0.128931	0.274451	0.317328	0.0297166	0	0	0.132614	0.092846	0.138006	0.0223253	0.132082	7.3863	7.27503	13.0507	12.6895	1.8031	2.13636	3.1389	2.57378	2.21577	2.08881	2.04654	3.7212	1.27758	3.77959	0	0.0644937	1.14953	1.66957
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016179Insulin-like
Vocabulary: Molecular Function
TermDefinition
GO:0005179hormone activity
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005576 extracellular region
molecular_function GO:0005179 hormone activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052674 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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