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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052658 ID=TCONS_00052658|Name=TCONS_00052658|organism=Clytia hemisphaerica|type=transcript|length=550bp
GAGAATGTTGAACAAGAAATCTAAAGAAGAAAAGatattcaagCAACTTT
TCGAGGATGGTTTGGAAATCCAGCGTGAACGTTTGCGAGAGTTGAAGAAA
TATGCTCATGAGCAACGAGAGAAGAATGATACCAAACAACGAAACGAAAT
TGAATCCATGGAAAACTATTATCGCGGACAGTTTTCTTTGCTTGCAGACA
CGATCGCTCAGGAGAAAAGTGAAATTCAAATCCGACAGAAAGCTCAGAAC
CAGCTTCTCCATAAAATGCGGAACGATATGCGAAAGAAGATGGAAGGTGA
TATTCAAACCATCCAAGATCAATTAATAAACGAGCAGGATACATTAAGTT
TTCGACAAATCGATGCTGATAACATGAGAAAAGAATTCAAATTAGCCACA
TATAAATCTACCAGATTTTAAAGAAATCTTATATTGTAAATAGTGTACAA
AAATAATTATActtaaattgagaaatatcGAAATAATCTTTGAACATTTC
TAAACCAACTTGTTAATGATTTCTAAATTTGCTTAAAAACAACCACGAAG Run BLAST on NCBI transcript from alignment at scaffold_218:222413..224375- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052658 ID=TCONS_00052658|Name=TCONS_00052658|organism=Clytia hemisphaerica|type=transcript|length=1963bp|location=Sequence derived from alignment at scaffold_218:222413..224375- (Clytia hemisphaerica)
GAGAATGTTGAACAAGAAATCTAAAGAAGAAAAGGTAATGTGAATAAATC
TTTTTCGAATGTTCTAAATGTTTTTAATAATGTGGAATAGGTGAAAAACT
CCGCGTTTTCTTTTCGTTGCAATCAATATAATGACGCGCAGCGCTTTGCA
CATTATATGAAAGATGAGCTTGATATATACTGAATGATGTCTCTGTTTTC
GATACAAGAATTCGATCGTACTTAATTTCAAACTATTGTAGTCACTGAAG
TAAATGTCGTTTGTACACCAGTTAACTGGTGGTTGCTAAAACCATTTATT
TTTCCACTATATTCGAAAAACTAATTGTCACAAAACTACTTTTTCTCAAA
TATCATTTCGTTCTTTTTAGATATTCAAGCAACTTTTCGAGGATGGTTTG
GAAATCCAGCGTGAACGTTTGCGAGAGTTGAAGAAATATGCTCATGAGCA
ACGAGAGAAGAATGATACCAAACAACGAAACGAAATTGAATCCATGGAAA
ACTAGTATCCTTTTCAGAAAAATGATCTCAAGATTCAATAGACCTTATCG
GAGTTTTTGATATTTCTAAAACAGCGATGCATTGTGGGATTATTTCGGGG
GTGTTACAATAGAATTCCCTCGAGGAATTCCTAAGAGATTTCTATTGTAA
TACCCCCGAAACAATCCCACGATGCATCGCTTTTTTAGAAAAATCAAAAA
CTCCGATAAGATCTATCACATTTTAAGCATGCTGATGTTCTTATCTTTAA
AAATCTCTAAGACATAAAGTGAAAGTCCTCTCTTTTGACCTTATTTGAAA
AGCGCGGCAATGCACTGCTACAAAGCAACGCCGACGAATCGGCTTTATAA
GTTCTCTATATTGTTGAATATTCGAGAGGGTTCAAGTGGATTCAAGGATT
ATTTTTGTTAACTTTTAGAAAATACTGTGCTTTGTACTTCTGTACTGTTA
AGTGCTTATGTCGAGAATTTAACCGATTTTCCGATTTTCCTTGACCGTCT
TTTAACACTAACAGTTATCGCGGACAGTTTTCTTTGCTTGCAGACACGAT
CGCTCAGGAGAAAAGTGAAATTCAAATCCGACAGAAAGCTCAGAACCAGG
TGATTGTGTAATTTGTTTTTCTTTCAAATTGAAATTTAAGGATAACGTTC
GGGGAGTGGTGTCAAATCAGACAGACGCATGTGAAAGAAGTACCATCGAT
ATTTTAAACCCTCTACCGCGAGAATACTCGAAGTTGGCAGCGAGCGTGTT
TAAACGGAGGGAAAATTAAACCTGGAAGATTAATTGTGGTTTAATGCATC
GAGTTTATTTTCATNAGTACCATCGATATTTTAAACCCTCTACCGCGAGA
ATACTCGAAGTTGGCAGCGAGCGTGTTTAAACGGAGGGAAAATTGAACCT
GGAAGATTAATTGTGATTTAATGCATCGAGTTTATTTTCAAGGGTCCGTG
CTTCAACAACTGAAAAAGTTGAAGCCCTATCAAGGAGACAAATTTATGAT
CGCTACATGTGCTCTCCTATTCAAGCTATTTTGACGTAATGTTTTATACG
GAAGCACCCTGAATAGGCCGGACGTTTCCCACTAATAGTTTTATTGATTA
AACTCAAAATTATTTTGTGCACTTCCTTTAAAACATTACATCATATTTAA
TCTTTTATTTTTACAGCTTCTCCATAAAATGCGGAACGATATGCGAAAGA
AGATGGAAGGTGATATTCAAACCATCCAAGATCAATTAATAAACGAGCAG
GATACATTAAGTTTTCGACAAATCGATGCTGATAACATGAGAAAAGAATT
CAAATTAGCCACATATAAATCTACCAGATTTTAAAGAAATCTTATATTGT
AAATAGTGTACAAAAATAATTATACTTAAATTGAGAAATATCGAAATAAT
CTTTGAACATTTCTAAACCAACTTGTTAATGATTTCTAAATTTGCTTAAA
AACAACCACGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052658-exon-scaffold_218-1575043694:224342..224375 | TCONS_00052658-exon-scaffold_218-1575043694:224342..224375 | Clytia hemisphaerica | exon |
| TCONS_00052658-exon-scaffold_218-1575043694:223872..224005 | TCONS_00052658-exon-scaffold_218-1575043694:223872..224005 | Clytia hemisphaerica | exon |
| TCONS_00052658-exon-scaffold_218-1575043694:223277..223361 | TCONS_00052658-exon-scaffold_218-1575043694:223277..223361 | Clytia hemisphaerica | exon |
| TCONS_00052658-exon-scaffold_218-1575043694:222413..222709 | TCONS_00052658-exon-scaffold_218-1575043694:222413..222709 | Clytia hemisphaerica | exon |
| TCONS_00052658-exon-scaffold_218-1510915933:224342..224375 | TCONS_00052658-exon-scaffold_218-1510915933:224342..224375 | Clytia hemisphaerica | exon |
| TCONS_00052658-exon-scaffold_218-1510915933:223872..224005 | TCONS_00052658-exon-scaffold_218-1510915933:223872..224005 | Clytia hemisphaerica | exon |
| TCONS_00052658-exon-scaffold_218-1510915933:223277..223361 | TCONS_00052658-exon-scaffold_218-1510915933:223277..223361 | Clytia hemisphaerica | exon |
| TCONS_00052658-exon-scaffold_218-1510915933:222413..222709 | TCONS_00052658-exon-scaffold_218-1510915933:222413..222709 | Clytia hemisphaerica | exon |
| TCONS_00052658-exon-scaffold_218-1491911889:224342..224375 | TCONS_00052658-exon-scaffold_218-1491911889:224342..224375 | Clytia hemisphaerica | exon |
| TCONS_00052658-exon-scaffold_218-1491911889:223872..224005 | TCONS_00052658-exon-scaffold_218-1491911889:223872..224005 | Clytia hemisphaerica | exon |
| TCONS_00052658-exon-scaffold_218-1491911889:223277..223361 | TCONS_00052658-exon-scaffold_218-1491911889:223277..223361 | Clytia hemisphaerica | exon |
| TCONS_00052658-exon-scaffold_218-1491911889:222413..222709 | TCONS_00052658-exon-scaffold_218-1491911889:222413..222709 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:222413..224375 - |
Blast
BLAST of TCONS_00052658 vs. Swiss-Prot (Human)
Match: CEP95 (Centrosomal protein of 95 kDa OS=Homo sapiens GN=CEP95 PE=1 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 7.115e-34 Identity = 60/138 (43.48%), Postives = 104/138 (75.36%), Query Frame = 2
Query: 2 RMLNKKSKEEKIFKQLFEDGLEIQRERLRELKKYAHEQREKNDTKQRNEIESMENYYRGQFSLLADTIAQEKSEIQIRQKAQNQLLHKMRNDMRKKMEGDIQTIQDQLINEQDTLSFRQIDADNMRKEFKLATYKSTR 415
+M+ +++EE IFK+LFE+GL IQ++RLR+L+ YA E+R++ + ++E++SMENYY+ QFSLLA+ I+QE E++ R+K+Q Q LHK++ ++R KME +IQ +QD + D + FR+++A+ R +LA+++ ++
Sbjct: 680 KMMRMRTREEMIFKKLFEEGLNIQKQRLRDLRNYAKEKRDEQRRRHQDELDSMENYYKDQFSLLAEAISQEHQELKAREKSQAQTLHKVKRELRSKMEKEIQQLQDMITQNDDDVFFRELEAERFRSRLQLASFQYSK 817
The following BLAST results are available for this feature:
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