TCONS_00052640 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052640
Unique NameTCONS_00052640
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length840

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052640 ID=TCONS_00052640|Name=TCONS_00052640|organism=Clytia hemisphaerica|type=transcript|length=840bp
ACTGTTGGTGAACCCTTATTGAACAGTTTTAGTAACTTTGGAAACCCCGG
TTAGACACACATAGTCAACTTACCATCAAACCTCTTTAAAGAAGCTccta
aaactttcaaaactactaaaaataacatcaaaaacattttaGCGACATTT
ATaaaagctctcaaacatcagccattttgagcttttgtttccattttgat
ttgttttcctttttctgcCAAGTCAGcttattttttcaatagaaattatG
CACACAGCAttcattgaaaaattcaaaaaatttcgcaaaaattctGATCA
GTGACTGGACGTGTATTAACCAATTAGAttacttgatttttttAgcaatt
gaaaataataatggCCGACTTACCTGATAGAAGAAGGAAGAAAGACAGAA
AACATCACCGCAAAGGTGCATCAAACCATGCAAGCAGCAATGGCATGGAT
GAAGAATTTGATTCAAATGATGACAACTATAGTGTGGTCAGTGAGGCTGA
TTCTGTTGACAGTCAGTTTGCCTTGGAGGACATTGATGaagGTGTCGATT
ATATGGAAGACTTTGAAGGAAAGCTAAAAGAGAACATTGAAGGATGTAGA
CAAAAAGGtTCAAATGGTAGACAAGCTTCCCTCCTAGAAGTACAAAAGGC
TTTACGCAGGAGATACGCTGGCGAATTTTTAACAGACAGGGTAGAAACTA
TGATTGACATTTTGGAGAAACTGATGAAGCGTGGTNCCTTAGAGTGGATA
AAATATTATGGAGTTTCTACTATATGCCATATATAGTTTCATATAATATA
CCTTTAATAAGTTCAATAAAGAGTTattttcagcgatttt
Run BLAST on NCBI

transcript from alignment at scaffold_218:752707..757428+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052640 ID=TCONS_00052640|Name=TCONS_00052640|organism=Clytia hemisphaerica|type=transcript|length=4722bp|location=Sequence derived from alignment at scaffold_218:752707..757428+ (Clytia hemisphaerica)
ACTGTTGGTGAACCCTTATTGAACAGTTTTAGTAACTTTGGAAACCCCGG
TTAGACACACATAGTCAACTTACCATCAAACCTCTTTAAAGAAGCTccta
aaactttcaaaactactaaaaataacatcaaaaacattttaGCGACATTT
ATaaaagctctcaaacatcagccattttgagcttttgtttccattttgat
ttgttttcctttttctgcCAAGTCAGcttattttttcaatagaaattatG
CACACAGCAttcattgaaaaattcaaaaaatttcgcaaaaattctGATCA
GTGACTGGACGTGTATTAACCAATTAGAttacttgatttttttgtgagta
TAGTACATTTTATTTCCAAACTTTTCTCAGAGTTTGGCTGGATTACCTAA
ATAAACTTAAAATGAACATTCTCACAAAATCACCACTTTTTATGTTGTTC
ACAGAAGCAGTCAAAAAGGTATCAAACATCTGATTCTGCATTTCATATAG
AATCTAACTCGGACTTCCCAGTCTGGAATAAAGAAGGATGGTAGTGGTCA
ACCTACATATGACATTAGGGTACATAATGGTAGCTAGTCATTGCTCCTGG
CCTTTATTAAACTTGCCAATAGTTGCTCNATTAGGGTACATAATGGTAGC
TGGTCATTGCTCCTGGCCTTTATTAAACTTGCCAATAGTTGCTCCCAAAA
TCTTTTCTGCCTCATAAGTTTGCGTGTAAGAACAGCAACTATTTTACTTG
AAACTTACAACATTCTCCTTTTTTTTCTAACATAAAACAAACACAGAAAT
AAGGCCTGCTTTCTCACTTATTAAACATACACAACAAATTTATTTTAGAg
caattgaaaataataatggCCGACTTACCTGATAGAAGAAGGAAGAAAGA
CAGAAAACATCACCGCAAAGGTAGACTTTATTCACCCAAAAGTCAACTGG
ATAGCAACTGCATCAAAACTTATTTCCAGCTTTTTTTTCTCCATAATACA
GCCTTTCTGTCAATGAAAAGAAATGTGGTGATATGTGATGGTTTTTTTTT
CACTACAAAAAATTCACTTGTGATATTCTTTCTTTAATGCAGAATTATTC
TTATGTTTAATAACATGACACCTTatattactttttgttttttcccttTA
GGTGCATCAAACCATGCAAGCAGCAATGGCATGGATGAAGAATTTGATTC
AAATGATGACAACTATAGTGTGGTCAGTGAGGCTGATTCTGTTGACAGTC
AGTTTGCCTTGGAGGACATTGATGGTATGAAAACAAAATAGTTCTGATgg
caattaacaaaattgaaaagAGCCTAAGGCGCTttcaaattagaaatttc
tttttgagGATATAATATTCAgaccatttttttgttttttagaagGTGTC
GATTATATGGAAGACTTTGAAGGAAAGCTAAAAGAGAACATTGAAGGATG
TAGACAAAAAGGGTAATTAATCATTTGAGACCCTCTCtaaaccagggggg
ggggtcagtgtaccagaaggtggcatgtatcctggggtgggtgggtgttt
gagaaaaaaatttgtcatgtactacctgtgtactataattggggtgttgg
gtccaaaatcgaatttgattttactacctgtgtaccaaaataggggtgtt
gggtccaaaatcgatgttaaaagtgtggaaacaaaaaggttaagaaatta
gaaaatagaaaatgtaaagttgttctattataaattgatcaagccaagtt
tgtccaagatcattcttccaaacttcttggaatgGATTGAAATCCTACTA
GATCCCACTGAAATGAAGGTTTATcgagtcaatgtaaacattccaacatt
tgaattcaaacattcaacattggtgccaactctcacgcattgggtgtgag
actcgtgcatttccacatggtctcgcatagtttttgaaaagtttgatttc
ttacgcattttggatttttgagaaaaattttcctgtttttccgatttttg
gaaaaaagttttcccaatttcccaatttcctgattttccgaaaaaaagtt
ttcccgatttcctgatttttggaaaaatgtttacccgattttccgatttt
tggaaaaaagtttctttttttttcggatttttcTAGGTAGTGCCCGGTAG
TAAatggggggtatggggtggttttgttttttttcaaggtactacccggt
agtaaatagggggtatggggtggttttagGATTTTTCCATGTAGTNcccc
cccccccccccgtctaaACATTGTCTTCCTATCTTGCCTTGTTGATATAT
ATATGTGACTCCCCCATCCGATATTTTGAATACCTAAAAATTGATTAGTC
TTGGTACGGTAATTGGGAGAAGTCTAATATTGATCAAGATTTTGTTTTGG
ATCAGCTTCAGTCattgtaaaaaatttgattgCAGCGGGTCCTTGTGGCT
TGCAGACGTTAATGACCCATCTTTTGACCTTCTGACTGCTCCTTAGTGTT
TGTTAGTGATGCtcacatcaaaaaattcttttaaaaagatgTCAGCCAGT
AAATCTGGGATCTGGGCCTGGGATGCAAAAGACACATTGAAATGGCCTCT
AGATTAACTGCACTCGTAGTATCCTTTTGGTAAATTGTTATTGAAAAAGA
CCATCAAAGACTGGTCCGATTTTTAAGTACTTAGTAATAAGATTGCTTGG
GGAGTCATTTATTTGTACTTTGTCATCAAGAAATCATTGAGACAGGTCCC
ATGAGGAACTTTGATATTAAAACAagtcaattctttttttaaacgaAATT
GTTAAAATGATATAGAATGTTTATAATTCATAGTAACTTCAAACTCttgc
atttaaaaaaaggtttcgctcagaaaaacacaattcttGAGTGAAGAAAC
TATTTCGGGCTTGTTTAGACTTCATGGTTATTTTAGAGCCATTTTTTAGA
AGGCGCGCAATTTAACAGACTCAGATCTGacgaggctcaaaatttaagat
ttttttaagccaTACTCCTTATAAGAAAATGCAGACTCTCATAAATTTTG
ACCTCCCTCTCAGATCAGCCActgattttcataattttttataaaccTTT
ACAatgtttcttctttctttttagtTCAAATGGTAGACAAGCTTCCCTCC
TAGAAGTACAAAAGGCTTTACGCAGGAGATACGCTGGCGAATTTTTAACA
GACAGGTTCTCTCCAAGTCTCAAAttcttcttttcattgttttctaccat
ctgtttgaaaatattttatatttttccagatttttcaaCCTGTAGACAGA
AGTCTATCATATCAAGTAAAGATATTTTTCCAGAATTTCAATATTTGCAA
GAAGAAGCTTTGCAATAAATGATGTTTGATTTATGGAAGTTTTGGCTGGT
TTTGGTCAAATTCAACAAAAGTGTTGACagtattagaaaaaaaatttaga
tagCCAAATGGACATGTTCATTAAaaacgtcaaattttcaaggtttttgt
gacatttttaaaTCATGTTACAAAATTATCTATAACTTTTTAATACTATA
TGATATAGAAAACCAACCTAAATGATGGTTAAGTAGGTGGATAGTCTTGT
GACAGTTTTTCTATACTCTTTACCTAAGTCAGGTAACGATTGAAAGAAGC
TTGCCAAGCTTTGGATAATGATGTAACatctgattttttcaaatttttgg
ataaTGGTACCCAGAACTTAATATTCCTTTGACATGGGGTACTGGAACCT
TTTGCAATCAATTAAGGGGTTTTCGCCCATATAATTTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
AATGTCATACATGTTGTTAAAATAAGGAtaccaatttttcatcattaaaa
CAAGTGTATGGTTTCTAATGTTTATTTCAAGTATACTTCATTGTCTTGGA
TAACATTGTAACATCAAAACAAGGTCATTTTCAAGATTCTTCCAAAGGGC
CTATTAATTGATGGCGAACATCAAAATCTACNCTTCAGTATAGAATAGGT
TGggttttgaaaaagtcaaaatttttattgccTGCTTGCTGTGGATAAAA
AAGTTACATTATTATCCAGATCTTCTTATACNTTAAACCTGATACCTTGT
CTCAGGACAGGTGATGAGTTATAAGTTTTAATACAAACTATAGACAAGAC
CTTGGAATTGATATAATTGACAATGGATAATTTANAGACATTGTTACGGA
ATTATCCACAAAATTTCATTACTTAGATCCCACAAAATCATGACTTATTa
acaaaaaagtgatttttaccattttttaggGTGTCACAAAACTTGACGTT
TTTAATGAACATGTCCAAATAAGTAAAAGTGACATTCATTATcataaact
tttattttatcttaaatGCAGGGTAGAAACTATGATTGACATTTTGGAGA
AACTGATGAAGCGTGGTNCCTTAGAGTGGATAAAATATTATGGAGTTTCT
ACTATATGCCATATATAGTTTCATATAATATACCTTTAATAAGTTCAATA
AAGAGTTattttcagcgatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033265XLOC_033265Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052640-exon-scaffold_218-1491911889:752707..753049TCONS_00052640-exon-scaffold_218-1491911889:752707..753049Clytia hemisphaericaexon
TCONS_00052640-exon-scaffold_218-1510915933:752707..753049TCONS_00052640-exon-scaffold_218-1510915933:752707..753049Clytia hemisphaericaexon
TCONS_00052640-exon-scaffold_218-1575043694:752707..753049TCONS_00052640-exon-scaffold_218-1575043694:752707..753049Clytia hemisphaericaexon
TCONS_00052640-exon-scaffold_218-1491911889:753555..753626TCONS_00052640-exon-scaffold_218-1491911889:753555..753626Clytia hemisphaericaexon
TCONS_00052640-exon-scaffold_218-1510915933:753555..753626TCONS_00052640-exon-scaffold_218-1510915933:753555..753626Clytia hemisphaericaexon
TCONS_00052640-exon-scaffold_218-1575043694:753555..753626TCONS_00052640-exon-scaffold_218-1575043694:753555..753626Clytia hemisphaericaexon
TCONS_00052640-exon-scaffold_218-1491911889:753858..753980TCONS_00052640-exon-scaffold_218-1491911889:753858..753980Clytia hemisphaericaexon
TCONS_00052640-exon-scaffold_218-1510915933:753858..753980TCONS_00052640-exon-scaffold_218-1510915933:753858..753980Clytia hemisphaericaexon
TCONS_00052640-exon-scaffold_218-1575043694:753858..753980TCONS_00052640-exon-scaffold_218-1575043694:753858..753980Clytia hemisphaericaexon
TCONS_00052640-exon-scaffold_218-1491911889:754099..754168TCONS_00052640-exon-scaffold_218-1491911889:754099..754168Clytia hemisphaericaexon
TCONS_00052640-exon-scaffold_218-1510915933:754099..754168TCONS_00052640-exon-scaffold_218-1510915933:754099..754168Clytia hemisphaericaexon
TCONS_00052640-exon-scaffold_218-1575043694:754099..754168TCONS_00052640-exon-scaffold_218-1575043694:754099..754168Clytia hemisphaericaexon
TCONS_00052640-exon-scaffold_218-1491911889:755831..755911TCONS_00052640-exon-scaffold_218-1491911889:755831..755911Clytia hemisphaericaexon
TCONS_00052640-exon-scaffold_218-1510915933:755831..755911TCONS_00052640-exon-scaffold_218-1510915933:755831..755911Clytia hemisphaericaexon
TCONS_00052640-exon-scaffold_218-1575043694:755831..755911TCONS_00052640-exon-scaffold_218-1575043694:755831..755911Clytia hemisphaericaexon
TCONS_00052640-exon-scaffold_218-1491911889:757278..757428TCONS_00052640-exon-scaffold_218-1491911889:757278..757428Clytia hemisphaericaexon
TCONS_00052640-exon-scaffold_218-1510915933:757278..757428TCONS_00052640-exon-scaffold_218-1510915933:757278..757428Clytia hemisphaericaexon
TCONS_00052640-exon-scaffold_218-1575043694:757278..757428TCONS_00052640-exon-scaffold_218-1575043694:757278..757428Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:752707..757428 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.409578	0	0	2.50794	1.21957	1.10352	1.54966	0.833017	1.30871	1.13049	0.279887	0.275745	0.485503	0.316461	0.254858	0.211579	0.987834	0.150136	0	0.947901	0.607183	0.323027	0.890567	1.84311	2.05616	1.52777	1.04672	0.305999	0.161089
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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