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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052629 ID=TCONS_00052629|Name=TCONS_00052629|organism=Clytia hemisphaerica|type=transcript|length=390bp
GAAAAATCAATATACTAATCAGAAATTAACTAATACTGTATACACTGATG
GATAACCTTGGTGGTTTTGACGTTGAGTTTGTTCTAGAGGAGAAAGACGA
TTTGAAATGTTCAATTTGTTTACTGGTGCTCAGAGAACCAATGCAAGCAG
AGCAGTGTGGACATCGATTTTGCAAAGGCTGTGTCATCAACTTACCTAAG
AGCGATAAAAAGGGATATATTTGTCCGATCGATCGAAGCAAAATGACGAA
CCACGTGAAAAATTGTGAATATGAGGAACTCGTTTGTACTATGACTGGTT
GTGGTACAAAATTTCAAAGGAGGTTCTTCTCAAAACACAACGAAGAAGAT
TGTGTCTGCAGAATGATGTCTTGTCCTTTCTGCTTTGAAG Run BLAST on NCBI transcript from alignment at scaffold_218:711987..713136+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052629 ID=TCONS_00052629|Name=TCONS_00052629|organism=Clytia hemisphaerica|type=transcript|length=1150bp|location=Sequence derived from alignment at scaffold_218:711987..713136+ (Clytia hemisphaerica)
GAAAAATCAATATACTAATCAGAAATTAACTAATACTGTATACACTGATG
GATAACCTTGGTGGTTTTGACGTTGAGTTTGTTCTAGAGGAGAAAGACGA
TTTGAAATGTTCAATTTGTTTACTGGTGCTCAGAGAACCAATGCAAGCAG
AGCAGTGTGGACATCGATTTTGCAAAGGCTGTGTCATCAACTTACCTAAG
AGGTAGATAGTCTTCTCATTGGTTTCGCTAGTTTCCAGTGCCCTGTGTGT
AAGAAATTTCAGCTGTGCTCAGGAAATAGACGATGACCAGATCAATGTTA
ATGGGGCTattcatttcaaattattttgactGCAATGACTGCCTCATTTT
GAAAGCATTACCGAGGTAATTAGATTCTACTTAGGCGAAAGGTCATTTAA
TTTCTTCTATAGGGACTAGTTTTGATTCTGCATCAACAACCTAATGCATT
TCAATAGAGATATACTCaataaatttatatattttcacaTGTACGTTATA
TATTTCAGCGATAAAAAGGGATATATTTGTCCGATCGATCGAAGCAAAAT
GACGGTAAGTATCCGAATGATATACTAGGAAAAtacttttaatgattttt
aataatttttaatgatttcaattaattttttgtctAAATGATATGTCTGA
TTATTTTCCTAGTTGTTTCAAGATAAAGGTCGTGAGCGGGAAATTTTGGA
CCGCTTAATTAAATGTGTGAATCACACAGACGGATGTTGTTGGACAAACG
AGTTGCGAGAACTGCAGGTGAAACATACATGTGTGATCTCGTCTTGAATT
AtttgtgaaattttcttattattatAAATGAGATTTCATTGGAAGATTTT
TCCTAAGGCATGTATCAGTTAAATTAAAAGTCCATAATTTTTGACAGGAT
GAACGATGAAATTCGGAGTTATTTATGGTaaatcaaggaaaatgaagtct
TTGTCTATTTTGTATTGGTGATAAGATGAGGCAAGCGTTGGTTCTTTTTG
CATCTTAGAACCACGTGAAAAATTGTGAATATGAGGAACTCGTTTGTACT
ATGACTGGTTGTGGTACAAAATTTCAAAGGAGGTTCTTCTCAAAACACAA
CGAAGAAGATTGTGTCTGCAGAATGATGTCTTGTCCTTTCTGCTTTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052629-exon-scaffold_218-1491911889:711987..712188 | TCONS_00052629-exon-scaffold_218-1491911889:711987..712188 | Clytia hemisphaerica | exon |
| TCONS_00052629-exon-scaffold_218-1510915933:711987..712188 | TCONS_00052629-exon-scaffold_218-1510915933:711987..712188 | Clytia hemisphaerica | exon |
| TCONS_00052629-exon-scaffold_218-1575043694:711987..712188 | TCONS_00052629-exon-scaffold_218-1575043694:711987..712188 | Clytia hemisphaerica | exon |
| TCONS_00052629-exon-scaffold_218-1491911889:712495..712540 | TCONS_00052629-exon-scaffold_218-1491911889:712495..712540 | Clytia hemisphaerica | exon |
| TCONS_00052629-exon-scaffold_218-1510915933:712495..712540 | TCONS_00052629-exon-scaffold_218-1510915933:712495..712540 | Clytia hemisphaerica | exon |
| TCONS_00052629-exon-scaffold_218-1575043694:712495..712540 | TCONS_00052629-exon-scaffold_218-1575043694:712495..712540 | Clytia hemisphaerica | exon |
| TCONS_00052629-exon-scaffold_218-1491911889:712995..713136 | TCONS_00052629-exon-scaffold_218-1491911889:712995..713136 | Clytia hemisphaerica | exon |
| TCONS_00052629-exon-scaffold_218-1510915933:712995..713136 | TCONS_00052629-exon-scaffold_218-1510915933:712995..713136 | Clytia hemisphaerica | exon |
| TCONS_00052629-exon-scaffold_218-1575043694:712995..713136 | TCONS_00052629-exon-scaffold_218-1575043694:712995..713136 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:711987..713136 + |
Blast
The following BLAST results are available for this feature:
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