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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052620 ID=TCONS_00052620|Name=TCONS_00052620|organism=Clytia hemisphaerica|type=transcript|length=1176bp CAGTGATTGACTAATACACTCTATTAGAAACAAAAAATGGATACTAGCAT TGGTGGTTATGATATCGAATTTGTCAATGATGAGCATGATATAACTTGCG TCATTTGTTTGGATGTTTTATGTCAACCTATGCAAGCAGTAAAGTGTGGT CACAGATTTTGCAAGAAATGCATGTTTGGTTTGCATAGAGTAATCATCTA AATGAATGCCAGTTTGAAGAGATCGAATGTCTTAATGGTTGTGGTGAAAC ATTCCAAAGAATGAACCTTGAAAAGCACGATACAGAAGATTGTCTGCATA GAATGATGACTTGTTTATTTTGCCACGATGACTATCCTTTTCATCAGGAG CAGGTAGGATCACAATAAAAATTGTCAATACTTTCCGCTTTGTTGTGAGT TTTGCCAGAATGGAAATATTCCGAGATGTCAGATGGAAAATCATATTAAT CAAGACTGTGGCAAGGCTCCACGCAAGTGTGAATTTGCACACTTAGGATG TGatgaaaagATAAAGCTTCAGGATGTTCAAAACCACAACGAGTTATTTC AAGAGCACCATATGAAACTAGCCATACAAGAGTTGGTACGTAAAGATGAA CGATTGGtgactttacaaaaagaaaacaaccgattggttaaaaaaaataa cagactacgaaaagaaaataaaaaccaaaaggATGAAATTAAATGAATGG GGTTGTCAATTGCAGAATTGTCTGAAAACAGCTCAAACGAGCATAAATGG AAAATCTTCAACTTCAGCTATGAAATCTCGAAAGCAATGACTCATTTCAA CCACTTTTTGAGTAAATCGTTTTACACTGATCTAGGATATCATGTTCAAG TCGACCTGTACCCAAATATTAATCATAGTAATGTTGTGGCTATTTATATC AAAACTATAAGTGGAGAATACGATGAAACCTTGCGCTGGCCAATTCCTAT GACTCAATTCTACATTCACCTTTCGAGTTGCGATGGGTGTCCATGCATAG CCAATATGCATGTAAACTCTCACGAAAATATGCAGACTCATTTGGCTTTA CAAAGGCCTCCACATTCTAACACAGGAGCTGGTTTCCTCAATCAATTATC CCTTGCTGATCTACAAAAGGCGTTGATTAATGATACGCTTATTTTGACAT TGAAAGTGCATTCATTGTAATGCTAG Run BLAST on NCBI transcript from alignment at scaffold_218:693765..699237+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052620 ID=TCONS_00052620|Name=TCONS_00052620|organism=Clytia hemisphaerica|type=transcript|length=5473bp|location=Sequence derived from alignment at scaffold_218:693765..699237+ (Clytia hemisphaerica) CAGTGATTGACTAATACACTCTATTAGAAACAAAAAATGGATACTAGCAT
TGGTGGTTATGATATCGAATTTGTCAATGATGAGCATGATATAACTTGCG
TCATTTGTTTGGATGTTTTATGTCAACCTATGCAAGCAGTAAAGTGTGGT
CACAGATTTTGCAAGAAATGCATGTTTGGTTTGCATAGAGTGTAAGTAGA
ATAGtatttccttttcctttttcttttttcttttttttccttttcttatt
AATCGTACTAggtaattttctttcaagaaaaAGCCAGTTTTATcccaaca
aaaaaacaattttgaaagcaATCAATGGATGAAGGAAAAAGCGCTTGCTA
AGTTAAATTTTTGATCAGCGATTAAAAACTTCCACCAACATTTAGAAAGA
TCAAAAGTTTTCATCAGAGCGGTGATCGCTTTTGAAAGTGAAGAGGGGGT
TCGACCAGGTTCGATATAAAGGGTCGTGTATGTTTAAGCACTTTCAAAAA
GTActtgttccaatttacaatACATTTCCCCAATCATTTCTGTTTTGTTA
GTAGAAGATTCAGTCGGCTCTGAATCTAATTCAAAATATTGCCTTATGAT
TTCAACCTTTTGATTTTCCATAGTGGAAAGCGGAAGTATAAATGCCCCAT
AGACCGATCAACAATTACTGTAAGACTTTACGAGTTTTAACTTCAGTTTA
GATTTCTTTATCAATTTACTGTAAGACTTTACGAGTTTTAACTTCAGTTT
AAATTTCTTTAACAATTATTGTAAGACTTTACGAGTTTTAACTTCAGTTT
AAATTTGTTTAACAATTATTGTAAGACTTCGAATAGATATTAACCTTAGT
TTAACACGAACCTCAGTACATTTTTGTCCAATCCAAAATACTTCGGAACA
TATTTTTGCGTTAATTTAGCTTATTAAAATGGCTATCTATCTACTTAACT
CTAGGTTATAACTAGGATCAATAGACGTGTTTCTACCCGACAAAAAGTTG
ATAGATTATTGCttgaattttctttaaagttatTCCGAGACACTGGAAAG
GAGAGAGAGATATTGAATAGTGTTGTCAGATGTATTCACAATGAGAGTGG
ATGTGAATGGACACAAGAGCTGCGGGAGTTAAAGGTGAGTTTGGTGAGGA
TCCATTTCAACAAGTAAGTTACATTTGAATTTGTCTGcgagctagacgac
taattcagacatagtagagataaagcaaaaagtaatggaggaaTAATTAT
AGTCTATACAGCCAAATATAGTTTATataaactaaatcccgtaacaataa
tcgtattatcatataacgcctatactactgtattacaagcattataaacg
actccgaTCTACATTTGAATAATTATTGTATTTAAAATGCTATCTTATAA
GCTTGTTTAGCCAAGTTTAACTTTTATAGAAACTGCTGGTCCTATAAACT
AACCCGGGTGATCAAAATTGCTGACCCGAAAAATTGTACCCTTTTAGTGT
TCGGAGAAAATTTCTCAAGGTTTGATCAAACTTGAACCAACAAATCAGCC
TCTCACTTAGTTTCTTTTCACCCTTTTAGCTCACTCCCGGAAGCTTTGAT
TggatgttttttcattcaacgtTAGATATTGGTGTCTACAGTTGAACTCG
TGTAGTTTCGAACTAAATAAGTTCAACTGTTCAAATGAGTTCAACTGTAT
TAAgtttttgatttaattcttcGACGATCCTTTCTTGTTTGCAGAATCAT
CTAAATGAATGCCAGTTTGAAGAGATCGAATGTCTTAATGGTTGTGGTGA
AACATTCCAAAGAATGAACCTTGAAAAGCACGATACAGAAGATTGTCTGC
ATAGAATGATGACTTGTTTATTTTGCCACGATGACTATCCTTTTCATCAG
GAGCAGGTAGGTGAGGCTTCCTGATGTAGCTGAAATCTGTACCAAAAATG
GTGAAGTTTCTAGCTCCGAAGGATAaacagttcattttttcttcttcttc
atttttcatcttcattttcaaaaatcttttaagtTATTTTCTAAGAAATA
GAATGGCTCTGAATTAGCTTTTCGACGAGTACTAATGTGTTAAGTATGTG
GCTATTGTTGAAaaaaatggcaagcaaaacaaGAATTAGTTCACATAGTT
AGGATaactttttaatctttttttatggtatgtatgtatgtaatagttta
tttcaagttgacgaacaggtagcaacaaaggctaataaaagtcaacgcta
ctttacaatttgtaaggtgattacagTTCAGGCacaagggcctctaaacc
gttcttgtacaaaaaatctttttgaaatataatttttcacgaGGGCTTCC
TCGTACCCTCCATTTAAAATCGTCATTCGATCTGGCTTTATTCATCTCGT
CTGCTCTCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNATAATGTAGCGTTCGTTGGCATTTATGACATTGAATTCTCATTTTT
TCATCGTCTTTTATACAATTATGCTCGGTACATCGATTGTTGTCACTCGC
ATCTTCGTCAGGGATCATGATCTTGCCAGGTGATGTcgtttttggttgaa
atttggctattttttccatatttttaaaattttattgaaaattcttcatt
ttgaaaaataaacgaaGAGCACAACCTTTctgtttgacgtcaaattttgg
tAGCGGTGGGGCCAAGTCTGGAGTTCCGTGACGACCTAGCCATTGTTAGC
CTATCcgaaagaacagtatattataagatatttttgtttttgtttcgttt
TTATGGCCCAAAATCGGAAATTGCCCCATTTCATATAGCTTAAATGAAGT
ACTTGTCGGTATAAATTTTCAAAGTGAGAATCATTTTTCAGATACCCACA
TAGTACTCTTACTTTTTTACAGGATCACAATAAAAATTGTCAATACTTTC
CGCTTTGTTGTGAGTTTTGCCAGAATGGAAATATTCCGAGATGTCAGGTG
ATTTTGTACTTTACTATAACTTAGCTCTTCTCCACTTCTAAAGTTTTTAC
CCCGCGCTGAATTAATTCCAAATTGAAAGATATTCTTACGGTAAACTTCT
CTGAAGGCATGTTCACAAGATCTTAGTAATTCAACTTTCCACCTCTTTTT
AGATGGAAAATCATATTAATCAAGACTGTGGCAAGGCTCCACGCAAGTGT
GAATTTGCACACTTAGGATGTGatgaaaaggttgatttttttttcatatc
attTTAGGTCAAGTTTTCAGCAACTTTCGTATATTCCAGTAATATTTTTA
TCTCTAACTTCTTTTGTTCCTTTTTCGAATTCTTGTTAATTTACAGTTCT
AAAAATGTTACCACTGCACAATCAGTTTTCGAAGAGAATTCACCGTTATA
TTACAtataataccgagtttatgtataccttatcggccaaaatttagtcg
gccttaattattagtgggccctaattttagtcggccctaattttagtcac
ctcgtcaaaacttagtcactaagggccgactaataattaagaccgactaa
aaatgtgggccatttctaaatttaccaGCACCagcagatggaaaatagga
gaaagcttaaaatactggaaaataaggAGAGCTTAATtagaaacttttaa
tttggcccaaatttttagtcggccttaattttagtcggccctaattttag
tcaccgagccaaaatttagtcacttagggccgactaagttttggccgata
aggtatgtgTTTTTCTGCATCGGAGACGGTAAAATTCTAATTTGactaca
tcctgactgactgaggacgacggtagaTCAGAACTTTTAccatcctcgat
tttgcgggtcaaaactgcgtgTTATTCCAAATCATTTCACTCACTTtacc
tcaaaagtgcaaatgcataaactcgctaattaTACGTCTTTTCAAAACGC
AATCTAGATAAAGCTTCAGGATGTTCAAAACCACAACGAGTTATTTCAAG
AGCACCATATGAAACTAGCCATACAAGAGTTGGTACGTAAAGATGAACGA
TTGGtgactttacaaaaagaaaacaaccgattggttaaaaaaaataacag
actacgaaaagaaaataaaaaccaaaaggATGAAATTAAATGAATGGGGT
TGTCAATTGCAGAATTGTCTGAAAACAGCTCAAACGAGCATAAATGGAAA
ATCTTCAACTTCAGCTATGAAATCTCGAAAGCAATGACTCATTTCAACCA
CTTTTTGAGTAAATCGTTTTACACTGATCTAGGATATCATGTTCAAGTCG
ACCTGTACCCAAATATTAATCATAGTAATGTTGTGGCTATTTATATCAAA
ACTATAAGTGGAGAATACGATGAAACCTTGCGCTGGCCAATTCCTATGAC
TCAATTCTACATTCACCTTTCGAGTTGCGATGGGTGTCCATGCATAGCCA
ATATGCATGTAAACTCTCACGAAAATATGCAGACTCATTTGGCTTTACAA
AGGCCTCCACATTCTAACACAGGAGCTGGTTTCCTCAATCAATTATCCCT
TGCTGATCTACAAAAGGCGTTGATTAATGATACGCTTATTTTGACATTGA
AAGTGCATTCATTGTAATGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00052620-exon-scaffold_218-1491911889:693765..693955 | TCONS_00052620-exon-scaffold_218-1491911889:693765..693955 | Clytia hemisphaerica | exon |
TCONS_00052620-exon-scaffold_218-1510915933:693765..693955 | TCONS_00052620-exon-scaffold_218-1510915933:693765..693955 | Clytia hemisphaerica | exon |
TCONS_00052620-exon-scaffold_218-1575043694:693765..693955 | TCONS_00052620-exon-scaffold_218-1575043694:693765..693955 | Clytia hemisphaerica | exon |
TCONS_00052620-exon-scaffold_218-1491911889:695509..695674 | TCONS_00052620-exon-scaffold_218-1491911889:695509..695674 | Clytia hemisphaerica | exon |
TCONS_00052620-exon-scaffold_218-1510915933:695509..695674 | TCONS_00052620-exon-scaffold_218-1510915933:695509..695674 | Clytia hemisphaerica | exon |
TCONS_00052620-exon-scaffold_218-1575043694:695509..695674 | TCONS_00052620-exon-scaffold_218-1575043694:695509..695674 | Clytia hemisphaerica | exon |
TCONS_00052620-exon-scaffold_218-1491911889:697537..697611 | TCONS_00052620-exon-scaffold_218-1491911889:697537..697611 | Clytia hemisphaerica | exon |
TCONS_00052620-exon-scaffold_218-1510915933:697537..697611 | TCONS_00052620-exon-scaffold_218-1510915933:697537..697611 | Clytia hemisphaerica | exon |
TCONS_00052620-exon-scaffold_218-1575043694:697537..697611 | TCONS_00052620-exon-scaffold_218-1575043694:697537..697611 | Clytia hemisphaerica | exon |
TCONS_00052620-exon-scaffold_218-1491911889:697767..697844 | TCONS_00052620-exon-scaffold_218-1491911889:697767..697844 | Clytia hemisphaerica | exon |
TCONS_00052620-exon-scaffold_218-1510915933:697767..697844 | TCONS_00052620-exon-scaffold_218-1510915933:697767..697844 | Clytia hemisphaerica | exon |
TCONS_00052620-exon-scaffold_218-1575043694:697767..697844 | TCONS_00052620-exon-scaffold_218-1575043694:697767..697844 | Clytia hemisphaerica | exon |
TCONS_00052620-exon-scaffold_218-1491911889:698572..699237 | TCONS_00052620-exon-scaffold_218-1491911889:698572..699237 | Clytia hemisphaerica | exon |
TCONS_00052620-exon-scaffold_218-1510915933:698572..699237 | TCONS_00052620-exon-scaffold_218-1510915933:698572..699237 | Clytia hemisphaerica | exon |
TCONS_00052620-exon-scaffold_218-1575043694:698572..699237 | TCONS_00052620-exon-scaffold_218-1575043694:698572..699237 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_218 | supercontig | scaffold_218:693765..699237 + |
Blast
The following BLAST results are available for this feature:
|