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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052615 ID=TCONS_00052615|Name=TCONS_00052615|organism=Clytia hemisphaerica|type=transcript|length=504bp
agaaaaacattgaaaatagaACATTGAAGAATCAAGAACATGGCACTTAA
TCAAGATACAGTTGGTGGTTATGATGTGGAGCTGGCGAACGGTGAAGAAA
ACAGTGTGATTTGCCCAATATGTCTTCACGTCCTCAGAGAACCGATGCAG
GCTGTTGATTGTGGACACAGATTCTGCAGAACATGTGTAGATCAATTGGT
TCGAAATGCAAACGGCCGATATACATGTCCAGAAGATCGTAGTGTAATGA
CATTATTTCAAGATCGAGGAAGGGAGCGCGAAATCATGTCACTTCTGGTA
AAATGTAGAAACGTTAGAAATGGTTGCCATTGGTCACATGAATTACGTCA
TCTCGAGACTCACCAATCGGAATGTGGTTACGAGGAAACGCATTGTGTCA
TCACTTTATGCTCAAAAAGAGTTCAAAGAAGATTGTTAGAGCAACATCAT
TCTGAAGAATGTGATTACAGATTAGTCATTTGTTTATATTGTTCAGATGA
ATAT Run BLAST on NCBI transcript from alignment at scaffold_218:689396..690941+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052615 ID=TCONS_00052615|Name=TCONS_00052615|organism=Clytia hemisphaerica|type=transcript|length=1546bp|location=Sequence derived from alignment at scaffold_218:689396..690941+ (Clytia hemisphaerica)
agaaaaacattgaaaatagaACATTGAAGAATCAAGAACATGGCACTTAA
TCAAGATACAGTTGGTGGTTATGATGTGGAGCTGGCGAACGGTGAAGAAA
ACAGTGTGATTTGCCCAATATGTCTTCACGTCCTCAGAGAACCGATGCAG
GCTGTTGATTGTGGACACAGATTCTGCAGAACATGTGTAGATCAATTGGT
TCGAAAGTATGTGGTTCATTTTCTAAATTAGGAAATTATTACCAGTAGGG
TGATGCACATTATAGAACATCTTTCACAAGACAGGTTGATTTGTCAGcca
attttgaatttctttaagCAGACTTAGGTTATGTCTGGCTTCAATGTAGC
GATTATTAAGATTTTGGCCAGAGTTTTTACAAtgcttttttgttgatttt
tcgtGTTCCGACAGCGTTTAATCTTTTGCTTTTCAGTGATTCATTATTGG
TCAATGAGCATCTACATACCATTCTCCCAAAgtataaaatattcttaatc
aAATCTAGTGTTTCTACCGTCGTTATAAAACCATAGTTACCTccaaaatt
tgaatcaaaaagcTTTAGTTGGTATTGTTAGTTAACCCTGAAATTTATGC
ACCTGCAGTAACTTCTTGTGAACTTCTTTGATAGAATCAAAGGATAGACC
TGTCAAGGAACAACTGTCACCGTGTTTTAGAGTAACTGTTTGACGTCCtg
tctttttcatgttttacagTGCAAACGGCCGATATACATGTCCAGAAGAT
CGTAGTGTAATGACAGTAAGTCTTCAAGCTTGCATTCATGTGGAATGTTT
TCTAGACTCTTTTAGAGaaatcaatttttaataaaGTCTGCAGACTCAAC
CTTAACGAGGTAAAATATGTTGCCACAGGTTATAAAGTTTCTTCAATCCC
TTTTTGCCAGTTATTTCAAGATCGAGGAAGGGAGCGCGAAATCATGTCAC
TTCTGGTAAAATGTAGAAACGTTAGAAATGGTTGCCATTGGTCACATGAA
TTACGTCATCTCGAGgtaaaattattatattttcGCATAGTGAAACTTCT
CAGATCAGTtgcatttttaccattttaggACTCTGGCTGCGAAAtaccca
aaaaataaaaaacattgattttctAGCCGtcagttttaaaggttttgtat
tTACATAAGTTTTCCCGTTCCCtaccagacacatatttcatatcaggaca
gtgtctgtctattgttatattgtgcttatataagcaaaaaatgtttttct
tttcctcttgctGACCAatatcttgctccacatctgtatcaattcaatgt
gaaaaagcttgtaaattaaattgatgattaagcaaatgatatcactctta
tttaaaaacaaaacctttaaggtaTAGGTATGATATCTTGATTTCTTAGA
CTCACCAATCGGAATGTGGTTACGAGGAAACGCATTGTGTCATCACTTTA
TGCTCAAAAAGAGTTCAAAGAAGATTGTTAGAGCAACATCATTCTGAAGA
ATGTGATTACAGATTAGTCATTTGTTTATATTGTTCAGATGAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052615-exon-scaffold_218-1491911889:689396..689601 | TCONS_00052615-exon-scaffold_218-1491911889:689396..689601 | Clytia hemisphaerica | exon |
| TCONS_00052615-exon-scaffold_218-1510915933:689396..689601 | TCONS_00052615-exon-scaffold_218-1510915933:689396..689601 | Clytia hemisphaerica | exon |
| TCONS_00052615-exon-scaffold_218-1575043694:689396..689601 | TCONS_00052615-exon-scaffold_218-1575043694:689396..689601 | Clytia hemisphaerica | exon |
| TCONS_00052615-exon-scaffold_218-1491911889:690115..690160 | TCONS_00052615-exon-scaffold_218-1491911889:690115..690160 | Clytia hemisphaerica | exon |
| TCONS_00052615-exon-scaffold_218-1510915933:690115..690160 | TCONS_00052615-exon-scaffold_218-1510915933:690115..690160 | Clytia hemisphaerica | exon |
| TCONS_00052615-exon-scaffold_218-1575043694:690115..690160 | TCONS_00052615-exon-scaffold_218-1575043694:690115..690160 | Clytia hemisphaerica | exon |
| TCONS_00052615-exon-scaffold_218-1491911889:690306..690410 | TCONS_00052615-exon-scaffold_218-1491911889:690306..690410 | Clytia hemisphaerica | exon |
| TCONS_00052615-exon-scaffold_218-1510915933:690306..690410 | TCONS_00052615-exon-scaffold_218-1510915933:690306..690410 | Clytia hemisphaerica | exon |
| TCONS_00052615-exon-scaffold_218-1575043694:690306..690410 | TCONS_00052615-exon-scaffold_218-1575043694:690306..690410 | Clytia hemisphaerica | exon |
| TCONS_00052615-exon-scaffold_218-1491911889:690795..690941 | TCONS_00052615-exon-scaffold_218-1491911889:690795..690941 | Clytia hemisphaerica | exon |
| TCONS_00052615-exon-scaffold_218-1510915933:690795..690941 | TCONS_00052615-exon-scaffold_218-1510915933:690795..690941 | Clytia hemisphaerica | exon |
| TCONS_00052615-exon-scaffold_218-1575043694:690795..690941 | TCONS_00052615-exon-scaffold_218-1575043694:690795..690941 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:689396..690941 + |
Blast
BLAST of TCONS_00052615 vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 2.087e-23 Identity = 59/148 (39.86%), Postives = 81/148 (54.73%), Query Frame = 1
Query: 61 VGGYDVELANGEENSVICPICLHVLREPMQAVDCGHRFCRTCVDQLVRNANGRYTCPEDRSVM---TLFQDRGREREIMSLLVKCRNVRNGCHWSHELRHLETHQSECGYEETHCVITLCSKRVQRRLLEQHHSEECDYRLVICLYCS 495
+ GYDVE E+ CPICL LRE +Q CGHRFC+ C+ + +R+A + CP D ++ LF D +REI+SL+VKC N GC ELRHLE HQ+ C + C C + Q+ + H ++C R V C C+
Sbjct: 53 IQGYDVEFDPPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAG--HKCPVDNEILLENQLFPDNFAKREILSLMVKCPN--EGCLHKMELRHLEDHQAHCEFALMDC--PQCQRPFQKFHINIHILKDCPRRQVSCDNCA 193
The following BLAST results are available for this feature:
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