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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052613 ID=TCONS_00052613|Name=TCONS_00052613|organism=Clytia hemisphaerica|type=transcript|length=1184bp
AAAACAAATAAGCCaagaaacaaataaaacaaacagTTTTAAACAATGAC
GAAAGGTGGATTTGAAGTTGAGTGATAAATTGCATTTTTTGCGATGAAAT
CTATTCTTTTCATCTTGAACAgGAACATATTGCAGACTGTAGGGAATTCT
TGCTCTGCTGTGATTATTGTACCAAGGACGATATTCCTCGATCACAGATG
GAAGTTCATCACCTCCAAGAGTGTCCAAAGCTACCTCATTCCTGCAAGTT
TGCTGCTGTCGGATGTGAAAGGAAAaTCCTTATAGGTGATATTGAAAATC
ATTTCAATGAATCAAAGGATACTCATTTGACTCTTGCATTAGAGAGAATT
GCTTCGCAGAATGAAGAACTTAAACAACACAAAATCGAGAATCGAAATCA
ACAACTTGAGATCACATCATTGAATACAAAACTGGAAGCGGTTATGCAGA
GATTGgagaaaacagaaaagaaattgaatataaCTAATTTCACTgatgaa
tttgttttaaagatccaaaattttgcggaaaatttcaGCACTGGCAAAAA
AATTAGAACTTCATTTTACACTTCCCGACGATACCGACTTGCGGTCTGGA
CTCCTCCAAAAGGCGCAAAAGAGAGCGTTTCGGATCATATGTCAGTGTTT
ATCCGAGTAACCAGTGGACATTTCGATGATAATATccaatggcctttcaa
agctaatatagaattttcggttttatctaAAAGTAAAAAGACATTTCATC
ACAGTATTAGACACCACCAACCAAATTTCTAAACATTGTTTCCAAAAACC
AACGAATGATAATAAATTTGGAAGTGGAATGGGGTATTCACAATTTGTGC
CCCAAAATAAACTTTCATCTCTTGtagaaaatgacattttatcTGTTAAC
GTTGAAATCATATACCATTGATGAATGCTTTTAGCCAGTTGACGGACTGC
TAAGTAAGAACTTGAACCTTAAGCACGATTTATGGGAAGGACATTCAACT
TTTTAGAACACTTCCATTTTGATACACTTACCTCTTGAAAAATAATCATA
AAttcaaaattgtcaatttttggttATCAATCAAGGTTAAAAGTAGTTTG
GAAGAGTGATGGAAACATACCAATCTTGTGTATAAAACATTTTATTACTC
CTTTTGTTGATTTagagtttttattttagtgGAC Run BLAST on NCBI protein sequence of TCONS_00052613-protein >TCONS_00052613-protein ID=TCONS_00052613-protein|Name=TCONS_00052613-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MEVHHLQECPKLPHSCKFAAVGCERKILIGDIENHFNESKDTHLTLALER
IASQNEELKQHKIENRNQQLEITSLNTKLEAVMQRLEKTEKKLNITNFTD
EFVLKIQNFAENFSTGKKIRTSFYTSRRYRLAVWTPPKGAKESVSDHMSV
FIRVTSGHFDDNIQWPFKANIEFSVLSKSKKTFHHSIRHHQPNF Run BLAST on NCBI transcript from alignment at scaffold_218:684805..688349+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052613 ID=TCONS_00052613|Name=TCONS_00052613|organism=Clytia hemisphaerica|type=transcript|length=3545bp|location=Sequence derived from alignment at scaffold_218:684805..688349+ (Clytia hemisphaerica)
AAAACAAATAAGCCaagaaacaaataaaacaaacagTTTTAAACAATGAC
GAAAGGTGGATTTGAAGTTGAGTGATAAATTGCATTTTTTGCGATGAAAT
CTATTCTTTTCATCTTGAACAggtaaaaatattgttttgaaaaagtctTA
ACTGACCCAGTTGAATTTTTATTACATGAGATTTAATTTAAAAGTACATA
AAGGAGGTATTTCCCAAATGCTTATTGCTTTGGGTTAGATTTTGGATTAA
GATTGATAGCtacgatggcccagaaggctcattATTGCTGCGCGCGAGAA
CATGACTGTGCGCGAGAATCATGCTGTGTGAGCGAGAAATATGTTGTGTG
AGCGAGAAATATGTTGTGCGAGCGAGAATTATGTTGTGCAAGCGAGAAAT
ATGTTGTGCGAGCGAGAAATATGTTGTGCGTGCGAAATGTATGTTGTGCG
CGCGAGAAGATGTTATCGCGCGCGAGAAGATGTTATCGCGCGCGAGAGAA
TATAGTCTAGTGCGAAAGCAAAGGAGACATATATTAGCAAAGAAGATATA
GTTTAACTTCCAAAAATAATGATTCTGGTCCTGAAATCGTGTCGCTGTTA
ATTTCATTCGGGTCCTCTAAATGTATACAAAGATGAACAATCATATCCAA
AATGATAGACAAAGTCGCGCAAAATGTTAAAGTTGTTGCATTTTTGTGGT
CATGCTGCTGGTTGCTGTGGTCCATGATTGATTGGCAAATTAAATATTCA
TCATTGGCTATATATTCATCATTCATATTCGCAAACTAAATATTCATCAT
TCATactggttgaaaaccttttcCCGAAGAATCTTGTTAAGCtgaaaaca
gtcaaaaaacatGTGTTTTGAGGGCATGTATTCTACAGACTTGAATCATA
AATTCCAGACTCGATTACAGGAGGGAGGGCGGAAAGGGCGGAATTAATAT
AATCAAACATCTACTTTGATTTTTGTGCTCGCGCGCAcagtatttttttt
ctcgcacaCAATTTCCAACTTGTGCGCGCACAACATACTTCTCGCGCGCA
TAATATACTTCTCATGCGCACAACATACTTTTCGCGCGCACAATATACTT
TTCTCGCTCGCACAGCATATTTCTCATGCAGAGTCATGTTCTCGCGCGCA
GCAATaatgagccttctgggccatcgtaGATAGCATTGGTACAACTGTTT
GTTTGAATAAGCATTAATTAATAGTGGAATATTACGCTTAATCCAATGAG
GTATGGGTATATATTCCATGCGCTAAAATGTTATAATAACTCTTTGtatg
aaaatgtttgttttgatatttcagGAACATATTGCAGACTGTAGGGAATT
CTTGCTCTGCTGTGATTATTGTACCAAGGACGATATTCCTCGATCACAGG
TTtaggaaatttctttttctgtCGTTGAGCTATTTTATGTACTGTTTATA
ATAAGAGTGAGAATTATTTTTATGTAGTTAAGGTATTACACtttcttttg
acttttgcttGGAAATACTAAAGTTTGGGACCCtagccaaaaaagaaaaa
gtttcttatcaTTTGTTATGCTTAGAGTTTAGGGtgccattttcaaaaca
aaatcgaCACCACCACCTGATCCTGGGTTGTATGTCTGGACCTTGAGCTG
CAAAAATTTCTTGTACCCCActttattgtattatttttcaATGGCTCTAA
CTATAAAAGCTATTTATTAACTTTCCAGATGGAAGTTCATCACCTCCAAG
AGTGTCCAAAGCTACCTCATTCCTGCAAGTTTGCTGCTGTCGGATGTGAA
AGGAAAGTTAGAACCTTTCCCTAAATACATTCGCTGAATATAATCATACA
TTAGTATGTATTTATAGTATTACATTCACAAGAAAGTccaactttttgga
cctaccttaaggtTATAAACCtacctataaattaacccgtgttcgttagt
tcgttcgttagtacgttagttaccaacttttctcgagattggctcattca
atttttctgattttttgcacaaagNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTTtagtttcaaattgtttttaaaataatggaatatattttttcaatt
ctccCAAATTTGGTGAATATAGGATAATGTACTTTTTCACCTCTCTTAAG
TTGATCTTTTCGAATGGACTCTTTTACATAAGATTTCGTAAAGGGCTGTT
AATGAGATTCAAGGGTTGTTTATAGGGTTTCCACAGCAAAATAATCTTGG
TACAGGCTttgtaatgaaaatatttattttttccagaTCCTTATAGGTGA
TATTGAAAATCATTTCAATGAATCAAAGGATACTCATTTGACTCTTGCAT
TAGAGAGAATTGCTTCGCAGAATGAAGAACTTAAACAACACAAAATCGAG
AATCGAAATCAACAACTTGAGATCACATCATTGAATACAAAACTGGAAGC
GGTTATGCAGAGATTGgagaaaacagaaaagaaattgaatataaCTAATT
TCACTgatgaatttgttttaaagatccaaaattttgcggaaaatttcaGC
ACTGGCAAAAAAATTAGAACTTCATTTTACACTTCCCGACGATACCGACT
TGCGGTCTGGACTCCTCCAAAAGGCGCAAAAGAGAGCGTTTCGGATCATA
TGTCAGTGTTTATCCGAGTAACCAGTGGACATTTCGATGATAATATccaa
tggcctttcaaagctaatatagaattttcggttttatctaAAAGTAAAAA
GACATTTCATCACAGTATTAGACACCACCAACCAAATTTCTAAACATTGT
TTCCAAAAACCAACGAATGATAATAAATTTGGAAGTGGAATGGGGTATTC
ACAATTTGTGCCCCAAAATAAACTTTCATCTCTTGtagaaaatgacattt
tatcTGTTAACGTTGAAATCATATACCATTGATGAATGCTTTTAGCCAGT
TGACGGACTGCTAAGTAAGAACTTGAACCTTAAGCACGATTTATGGGAAG
GACATTCAACTTTTTAGAACACTTCCATTTTGATACACTTACCTCTTGAA
AAATAATCATAAAttcaaaattgtcaatttttggttATCAATCAAGGTTA
AAAGTAGTTTGGAAGAGTGATGGAAACATACCAATCTTGTGTATAAAACA
TTTTATTACTCCTTTTGTTGATTTagagtttttattttagtgGAC Coding sequence (CDS) from alignment at scaffold_218:684805..688349+ >TCONS_00052613 ID=TCONS_00052613|Name=TCONS_00052613|organism=Clytia hemisphaerica|type=CDS|length=1170bp|location=Sequence derived from alignment at scaffold_218:684805..688349+ (Clytia hemisphaerica)
ATGGAAGTTCATCACCTCCAAGAGTGTCCAAAGCTACCTCATTCCTGCAA
GTTTGCTGCTGTCGGATGTGAAAGGAAAaTCCTTATAGGTGATATTGAAA
ATCATTTCAATGAATCAAAGGATACTCATTTGACTCTTGCATTAGAGAGA
ATTGCTTCGCAGAATGAAGAACTTAAACAACACAAAATCGAGAATCGAAA
TCAACAACTTGAGATCACATCATTGAATACAAAACTGGAAGCGGTTATGC
AGAGATTGgagaaaacagaaaagaaattgaatataaCTAATTTCACTgat
gaatttgttttaaagatccaaaattttgcggaaaatttcaGCACTGGCAA
AAAAATTAGAACTTCATTTTACACTTCCCGACGATACCGACTTGCGGTCT
GGACTCCTCCAAAAGGCGCAAAAGAGAGCGTTTCGGATCATATGTCAGTG
TTTATCCGAGTAACCAGTGGACATTTCGATGATAATATccaatggccttt
caaagctaatatagaattttcggttttatctaAAAGTAAAAAGACATTTC
ATCACAGTATTAGACACCACCAACCAAATTTCTAAATGGAAGTTCATCAC
CTCCAAGAGTGTCCAAAGCTACCTCATTCCTGCAAGTTTGCTGCTGTCGG
ATGTGAAAGGAAAaTCCTTATAGGTGATATTGAAAATCATTTCAATGAAT
CAAAGGATACTCATTTGACTCTTGCATTAGAGAGAATTGCTTCGCAGAAT
GAAGAACTTAAACAACACAAAATCGAGAATCGAAATCAACAACTTGAGAT
CACATCATTGAATACAAAACTGGAAGCGGTTATGCAGAGATTGgagaaaa
cagaaaagaaattgaatataaCTAATTTCACTgatgaatttgttttaaag
atccaaaattttgcggaaaatttcaGCACTGGCAAAAAAATTAGAACTTC
ATTTTACACTTCCCGACGATACCGACTTGCGGTCTGGACTCCTCCAAAAG
GCGCAAAAGAGAGCGTTTCGGATCATATGTCAGTGTTTATCCGAGTAACC
AGTGGACATTTCGATGATAATATccaatggcctttcaaagctaatataga
attttcggttttatctaAAAGTAAAAAGACATTTCATCACAGTATTAGAC
ACCACCAACCAAATTTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052613-exon-scaffold_218-1491911889:684805..684926 | TCONS_00052613-exon-scaffold_218-1491911889:684805..684926 | Clytia hemisphaerica | exon |
| TCONS_00052613-exon-scaffold_218-1510915933:684805..684926 | TCONS_00052613-exon-scaffold_218-1510915933:684805..684926 | Clytia hemisphaerica | exon |
| TCONS_00052613-exon-scaffold_218-1575043694:684805..684926 | TCONS_00052613-exon-scaffold_218-1575043694:684805..684926 | Clytia hemisphaerica | exon |
| TCONS_00052613-exon-scaffold_218-1491911889:686129..686203 | TCONS_00052613-exon-scaffold_218-1491911889:686129..686203 | Clytia hemisphaerica | exon |
| TCONS_00052613-exon-scaffold_218-1510915933:686129..686203 | TCONS_00052613-exon-scaffold_218-1510915933:686129..686203 | Clytia hemisphaerica | exon |
| TCONS_00052613-exon-scaffold_218-1575043694:686129..686203 | TCONS_00052613-exon-scaffold_218-1575043694:686129..686203 | Clytia hemisphaerica | exon |
| TCONS_00052613-exon-scaffold_218-1491911889:686533..686610 | TCONS_00052613-exon-scaffold_218-1491911889:686533..686610 | Clytia hemisphaerica | exon |
| TCONS_00052613-exon-scaffold_218-1510915933:686533..686610 | TCONS_00052613-exon-scaffold_218-1510915933:686533..686610 | Clytia hemisphaerica | exon |
| TCONS_00052613-exon-scaffold_218-1575043694:686533..686610 | TCONS_00052613-exon-scaffold_218-1575043694:686533..686610 | Clytia hemisphaerica | exon |
| TCONS_00052613-exon-scaffold_218-1491911889:687441..688349 | TCONS_00052613-exon-scaffold_218-1491911889:687441..688349 | Clytia hemisphaerica | exon |
| TCONS_00052613-exon-scaffold_218-1510915933:687441..688349 | TCONS_00052613-exon-scaffold_218-1510915933:687441..688349 | Clytia hemisphaerica | exon |
| TCONS_00052613-exon-scaffold_218-1575043694:687441..688349 | TCONS_00052613-exon-scaffold_218-1575043694:687441..688349 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:684805..688349 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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