TCONS_00052606 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052606
Unique NameTCONS_00052606
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4410

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052606 ID=TCONS_00052606|Name=TCONS_00052606|organism=Clytia hemisphaerica|type=transcript|length=4410bp
TAGTGATAAAGGTCATTATGTCTGCCCTGAAGACAGAAGTGAAATGAAGt
TATTTCCTGATAAGGGAAGAGAACGAGAAATCCTCAGCAAGATTGTGAAA
TGTAACAATGCTGATAATGGTTGTCAATGGACCAAGGAGTTGCGCCAATT
AAAAGATCACCTTGCAAGTGATTGTTTTTACAATCTTGTCGAGTGTCCTC
GGAATGAATGTAATGAAGAAGTTATTGCGCATCATTTAGCTGATCATATG
AGTGATGAATGTGAATATAGAAGATTGTGGTGTCCATTCTGCTTTCAAAG
ATACTCTTTCAACTTAGAGGAGatgGAAGATCATCTTTTAGATGAGTGTA
CTAGAAGGCTCATTCCATGTCAGTTTGCTAACCTAGGTTGTGAAGAAcag
gtacatatgGAGAATTTCATCAAACATGAAACCGATTCTGCCCCATACCA
TCTAAAATTGGCTATAAATAAAATATCAGAGCAAGATGAAATGGTTCAGT
TACAAAATGAGAAGTTAGAATCTCAAGAGAGCAAAATTTCAGAATTAGAA
CTTTCCCAGAAAAATCTCAGCAACAGTTTAACTCAAATTCAAAACAGGAT
TCCTGCACCAATATTTAGTAGTAATTCTTTCATCCTAAAAATACATGACT
TTGATAAAGAACTTGACAGAGCTAAAAAGGGAATTCCAATGTACCGATGG
TTTTATACTTCAAGGTTTCACAATCTGTTAATATATATTTACCTCAAAGG
AGCAGATAAAGATTACGTTGGTCTTTATTTTTCTACAACACAGGGAAATT
TTGATGACATGATTGAATGGCCAATGGTTGCTCGTATATGCAGTTGGACA
CAGAATGGTGGGAAATTATCCAATCCTCACATACTTGATACTTCACAATA
TAAAGAAAACTTTGGGAATGTGACAACTAAAGGAGGCCAAGGTTTCCCTA
GATTTACTAGAATTGATGAAGTTAAAGAAGATACACTGATTGTGAAAATC
AAGTTAGCCTATAAGTATTAAGAGTCAGTAAAATGGTATGAATCCCTCTT
TGAAGATCTTCTTTGTACCTAAGCCCAGTAAACTGCTGTATacaattttt
ccctttttcttcCTAACCATTCTATTTTGGGTTGCTTGCTGTATCATTTA
ATCTGTATATCAAGTTTGTTGAGTAATTGTGTTGAttgcaaaaaagtttt
gatGTTTCGTTGTTTGCAATTTCATTTGTCATTTACTTTCCCTTTCCCTA
AAAAAGTTCGCTAAAGCAATTTCATTGGGCACTAAAATTTATCATTGTGT
CTATTTAGACTGATTAAACCAACCACAATTCTTATTGATATGCCCCCATT
GCTCAATCAGATTTCCAGTTATTTTTACGTCAGGCTTTAAGACAGGAGAC
ATAAAACTACAGCATAGTAATAAAATCTGTCAGTCTGGATTCGTATAAAT
TAATACATACAGGTGTATGTACCGCAGAAGGTACATGAAATTTAAAAGTC
CTATAAATTTTGCCTACATagctttttcttgattttctttttatttctaa
taagttttttttaatcataaaaacTCTTCCTGGTAAGGCATTTgccaatt
tttgataattttgatatatttttttcagattgaacttttaactttttatg
cTTGTATACTGCAAAAGGTCAGTCTGGAAAAACGGCGGTATCTTTTGATA
TGACCTACAACCctgaaatttggacaaaaagcTTCTCATAAATTCCTCTT
TGATTCTTTAAATTGGTGCAGAGTTATATTCAGGGGAAATCCATCTTGTA
CTACAAAATACCATTGGCTGGTACCGCAAAGTGTCAGTCATTTAAACAAA
TTCgttgaaaaattctttattgCAAACgcatttttgattatttttataat
ttccTAGTTGGTCTATGTTGTTTTGAAGATACAGagtgttttaaatttgt
ttatGTTTAGTCCAGACAAAAGGTAAGAGATTTGAAGGTCGTTTAAGATA
TACTTTAATTTGAACGAATTGTTTTCAGTTGGTAACAACGATAGGACCTA
GTGTCCTAAATAGTTACAGCCGTGACCGTTTAATAATAAATTCCAAACAA
AACTCAATCTTTAAAAAAAATAAGAACAGAAAAAGAAAGCAAAAAAAAGG
CAAAGGAAAAGCAAGAAACAACAAGAGATAGAGGCGTTGTGTAAGTGCAA
AGAACAGTGCTTTTGTGTTGAAGAGTGTAAAGCTATGCATTTAAAAGAAT
GTCCATCATGTCACAACATTCTGAAATCTGTGTGTAGCAAATCTGGTTGC
CTTCAAGACTTCAAGATGGAAAAAAGTCAGTAATGATTGCTGCTGCCTCT
GCCCAAAAAACCAACAAGAAGCATGATATGATCTCTGATGATGATGATAA
TTTCAATACCGACAGCGATGATGATTTTAGTAGTGATGACAGCGAAAGCA
ACATATCGATTGATGAAGTTGAGGAAGATAAGGTTACAATTGAATCGATG
AAAAAGGTGTGGGCCTATTTGAGTCTTCCAAATAAAGAGGACAACTTAAT
ATGCAAGTGGTTTGCTGTTTGTTATAAAGGTAAACGGAATGAAACACTTT
ATATTTCAAAAGTGATTGCACATTTCCTGCAAGACGAAAATGGTCCTGTT
GATGAGTTGATCATGAGATCATTAAAGCCAAAATTTGGGTCAGTACAATA
TGATTTTTCTAACGTATTCATAGATTATTTTCATTGTAAGATTTTATTTA
ATTATTTCTACCTATTTATATTCCATATTATTCAATAgtattcaaaattt
attcaaaaaatttcttcatagTGCTTAAAAactcgatgaattttcactgt
tCAATTTTAGTATTTTGGTGTACCGCAAAATGTTAGTCTAATATCTCTTA
CAAAAGTGACCCTATATTTTCCTTACAGCCTTGGGGATCcattttttttc
actcaaacCCTCCTTTACTGTGCTGAAGCTGCTAGAAAAAAGCTACTTTA
CTGagttatattcaaatttttgttcgcgattttcctcaaaaatctaaaat
cttccATTACAATTTTTTGTGATAAAGCCCGATAACATTTTCCAGAGAAG
TCAAAATGCTCAAATTGCTGCTTGGATCAAATCTCTCATCCTTAAGTCAT
ATAAAAACCAAGATGGTGTAAGTTTAAAACGAATTTGCTGACCTGTAGCA
AGCCAAATTCAAACACTGACATTCTGTGGTACCAGGGCCTTTTGTGGTAC
ATACACCTGTAGGAAATCATTTGAAAAGCATAGTTTGGTAAAGCTTTAAA
ACTTATGATCTACACATAGAAATGATATAATTCAATTGAATGGAGAACCC
AGAAAGTCGAGGAAGTTATGATGTTGAGTTGGTAAATGAAGAGATGCAGC
ATGACAATACGTGCTCAGTTTTATTTTACGCAAGCctatgcaaaataaag
aatGTGGTCatcgtttttgaaaatcaagcATTGCTGTTTAAAGAAAAGGT
ACTGGATGGTTAGAAAAACTTTGGTTTGGTAACGCCTTTGAGCCGAATGG
ATAAAAATGTGAACTTGAATATGATATCATAAGAAAGAGGAaggtctaac
ttaaattttgaattgTTACTGTTCAAATTTGGTTCAATCAATAGTTTTTG
AGTAATcggtttttaaaataaaattttactaTTTCAAAATGTGCCAAAAT
GGTAGAAAAATAGATGATCAAGTTAACAATGAGAAAGAGATGGTACTGAA
ATAGACATGCCTAATGATTGTACTGGCACATATATAAATAAAAGCTTATT
CGTTGGAAAAGCATTATTAACTCTGGCACACTCAANACTGAAATAGACAT
GCCTAATGATTGTACTGGCACATATATAAATAAAAGCTTATTCGTTGGAA
AAGCATTATTAACTCTGGCACACTCAACACAAACAGGAGACAAACCCACA
CACACTGGTCCTTCGTAAGATGAAGTATTTTGATGGAGAGATTGAGATTT
TTACACACATGCCTCTTTCCAATAACATTCTTTTTCATAAAACTTTTCTA
GATAACAATTCCATTTTCTTTGAGTAAAAATGTAGAAATGGGTCAAAATT
AGTTTTCTTCATGTTTTGCAGGAACTGATGCAAGAGCAAGGTTGTGGACA
CAAATTCTGCAAATGTTTTTTGGCCGTCCGTAAAGTTCTCAAaGCATCTT
AAACTCAGTGTTTTGATAAGAAACCGAAAGTAATATGTCATTTCTTCTCA
ACAACCATGATAATATAGTGCAACCCATAATTATATGCTTGTCTGTTATT
TTCAGGAAGTGCCCAGCTGAccctttttgttttatttcaagtAAATATTG
ATGATTCTTTCTATTTGCTATTTTCACTGTTCTTGTTTTTGTTCAGAAAT
TCAGAAATCA
Run BLAST on NCBI

protein sequence of TCONS_00052606-protein

>TCONS_00052606-protein ID=TCONS_00052606-protein|Name=TCONS_00052606-protein|organism=Clytia hemisphaerica|type=polypeptide|length=339bp
SDKGHYVCPEDRSEMKLFPDKGREREILSKIVKCNNADNGCQWTKELRQL
KDHLASDCFYNLVECPRNECNEEVIAHHLADHMSDECEYRRLWCPFCFQR
YSFNLEEMEDHLLDECTRRLIPCQFANLGCEEQVHMENFIKHETDSAPYH
LKLAINKISEQDEMVQLQNEKLESQESKISELELSQKNLSNSLTQIQNRI
PAPIFSSNSFILKIHDFDKELDRAKKGIPMYRWFYTSRFHNLLIYIYLKG
ADKDYVGLYFSTTQGNFDDMIEWPMVARICSWTQNGGKLSNPHILDTSQY
KENFGNVTTKGGQGFPRFTRIDEVKEDTLIVKIKLAYKY
Run BLAST on NCBI

transcript from alignment at scaffold_218:644466..650902+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052606 ID=TCONS_00052606|Name=TCONS_00052606|organism=Clytia hemisphaerica|type=transcript|length=6437bp|location=Sequence derived from alignment at scaffold_218:644466..650902+ (Clytia hemisphaerica)
TAGTGATAAAGGTCATTATGTCTGCCCTGAAGACAGAAGTGAAATGAAGG
TAAGAGAGCAACAAGCACTTATATCAAAACTTGACTTGACTTTTTTTGCT
GAACTGCTGTAAGTCATTTTTAACTgctgttatttttgttttctttctct
tttagtTATTTCCTGATAAGGGAAGAGAACGAGAAATCCTCAGCAAGATT
GTGAAATGTAACAATGCTGATAATGGTTGTCAATGGACCAAGGAGTTGCG
CCAATTAAAAGTGAGCCTGAATTTTTAATTCATGTTGGTGACATTGTTAG
CTTGCTATGCCATATCTTGCTCAAAATGACTTATTGCTACTTGCTTTCAA
GAAAAGAAATTGTGATGGATATAAGTAGTGTGATTACAACTTTGTTTTCT
TTAGGATCACCTTGCAAGTGATTGTTTTTACAATCTTGTCGAGTGTCCTC
GGAATGAATGTAATGAAGAAGTTATTGCGCATCATTTAGCTGATCATATG
AGTGATGAATGTGAATATAGAAGATTGTGGTGTCCATTCTGCTTTCAAAG
ATACTCTTTCAACTTAGAGGAGGTACTTTTTCGTAACATCTCTGACATTT
TTTTAGCTCTAGGAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGATTACCTTGTTGC
AGTAAAAGTagtacatacacgttttttttttagaaaaacaagtTTTACCA
AGCGGCCTCAATGTTTCCTAAGGAatcagccttttgagccttaaatgttt
ctaaactttttgacataatcggcctatttttcatgcaaagaaaaaaaaca
ttttgatcggattaaaaaatgttattttctcattctcaacctcagcatgt
ttcttagatgtttcttagtttttaggcattctgagcttcatgtttcttaa
aagtgtgtttcttaaaaaaaacttgaaaaatgtgACATAGAATTTATGGA
ATTGTAAcacatttttattttagatgGAAGATCATCTTTTAGATGAGTGT
ACTAGAAGGCTCATTCCATGTCAGTTTGCTAACCTAGGTTGTGAAGAAca
ggttggaattttttttctgataaatattttactatcaagaattttttgtt
tgtccGTAGTTCTTTTATCAAGTATTGTTATGTTAATCACTATTTCACTG
TTGAATTGCATTTGCATGTAACTTTCctctatttttttaatttaaaggta
catatgGAGAATTTCATCAAACATGAAACCGATTCTGCCCCATACCATCT
AAAATTGGCTATAAATAAAATATCAGAGCAAGATGAAATGGTTCAGTTAC
AAAATGAGAAGTTAGAATCTCAAGAGAGCAAAATTTCAGAATTAGAACTT
TCCCAGAAAAATCTCAGCAACAGTTTAACTCAAATTCAAAACAGGATTCC
TGCACCAATATTTAGTAGTAATTCTTTCATCCTAAAAATACATGACTTTG
ATAAAGAACTTGACAGAGCTAAAAAGGGAATTCCAATGTACCGATGGTTT
TATACTTCAAGGTTTCACAATCTGTTAATATATATTTACCTCAAAGGAGC
AGATAAAGATTACGTTGGTCTTTATTTTTCTACAACACAGGGAAATTTTG
ATGACATGATTGAATGGCCAATGGTTGCTCGTATATGCAGTTGGACACAG
AATGGTGGGAAATTATCCAATCCTCACATACTTGATACTTCACAATATAA
AGAAAACTTTGGGAATGTGACAACTAAAGGAGGCCAAGGTTTCCCTAGAT
TTACTAGAATTGATGAAGTTAAAGAAGATACACTGATTGTGAAAATCAAG
TTAGCCTATAAGTATTAAGAGTCAGTAAAATGGTATGAATCCCTCTTTGA
AGATCTTCTTTGTACCTAAGCCCAGTAAACTGCTGTATacaatttttccc
tttttcttcCTAACCATTCTATTTTGGGTTGCTTGCTGTATCATTTAATC
TGTATATCAAGTTTGTTGAGTAATTGTGTTGAttgcaaaaaagttttgat
GTTTCGTTGTTTGCAATTTCATTTGTCATTTACTTTCCCTTTCCCTAAAA
AAGTTCGCTAAAGCAATTTCATTGGGCACTAAAATTTATCATTGTGTCTA
TTTAGACTGATTAAACCAACCACAATTCTTATTGATATGCCCCCATTGCT
CAATCAGATTTCCAGTTATTTTTACGTCAGGCTTTAAGACAGGAGACATA
AAACTACAGCATAGTAATAAAATCTGTCAGTCTGGATTCGTATAAATTAA
TACATACAGGTGTATGTACCGCAGAAGGTACATGAAATTTAAAAGTCCTA
TAAATTTTGCCTACATagctttttcttgattttctttttatttctaataa
gttttttttaatcataaaaacTCTTCCTGGTAAGGCATTTgccaattttt
gataattttgatatatttttttcagattgaacttttaactttttatgcTT
GTATACTGCAAAAGGTCAGTCTGGAAAAACGGCGGTATCTTTTGATATGA
CCTACAACCctgaaatttggacaaaaagcTTCTCATAAATTCCTCTTTGA
TTCTTTAAATTGGTGCAGAGTTATATTCAGGGGAAATCCATCTTGTACTA
CAAAATACCATTGGCTGGTACCGCAAAGTGTCAGTCATTTAAACAAATTC
gttgaaaaattctttattgCAAACgcatttttgattatttttataatttc
cTAGTTGGTCTATGTTGTTTTGAAGATACAGagtgttttaaatttgttta
tGTTTAGTCCAGACAAAAGGTAAGAGATTTGAAGGTCGTTTAAGATATAC
TTTAATTTGAACGAATTGTTTTCAGTTGGTAACAACGATAGGACCTAGTG
TCCTAAATAGTTACAGCCGTGACCGTTTAATAATAAATTCCAAACAAAAC
TCAATCTTTAAAAAAAATAAGAACAGAAAAAGAAAGCAAAAAAAAGGCAA
AGGAAAAGCAAGAAACAACAAGAGATAGAGGCGTTGTGTAAGTGCAAAGA
ACAGTGCTTTTGTGTTGAAGAGTGTAAAGCTATGCATTTAAAAGAATGTC
CATCATGTCACAACATTCTGAAATCTGTGTGTAGCAAATCTGGTTGCCTT
CAAGACTTCAAGATGGAAAAAAGTCAGTAATGATTGCTGCTGCCTCTGCC
CAAAAAACCAACAAGAAGCATGATATGATCTCTGATGATGATGATAATTT
CAATACCGACAGCGATGATGATTTTAGTAGTGATGACAGCGAAAGCAACA
TATCGATTGATGAAGTTGAGGAAGATAAGGTTACAATTGAATCGATGAAA
AAGGTGTGGGCCTATTTGAGTCTTCCAAATAAAGAGGACAACTTAATATG
CAAGTGGTTTGCTGTTTGTTATAAAGGTAAACGGAATGAAACACTTTATA
TTTCAAAAGTGATTGCACATTTCCTGCAAGACGAAAATGGTCCTGTTGAT
GAGTTGATCATGAGATCATTAAAGCCAAAATTTGGGTCAGTACAATATGA
TTTTTCTAACGTATTCATAGATTATTTTCATTGTAAGATTTTATTTAATT
ATTTCTACCTATTTATATTCCATATTATTCAATAgtattcaaaatttatt
caaaaaatttcttcatagTGCTTAAAAactcgatgaattttcactgttCA
ATTTTAGTATTTTGGTGTACCGCAAAATGTTAGTCTAATATCTCTTACAA
AAGTGACCCTATATTTTCCTTACAGCCTTGGGGATCcattttttttcact
caaacCCTCCTTTACTGTGCTGAAGCTGCTAGAAAAAAGCTACTTTACTG
agttatattcaaatttttgttcgcgattttcctcaaaaatctaaaatctt
ccATTACAATTTTTTGTGATAAAGCCCGATAACATTTTCCAGAGAAGTCA
AAATGCTCAAATTGCTGCTTGGATCAAATCTCTCATCCTTAAGTCATATA
AAAACCAAGATGGTGTAAGTTTAAAACGAATTTGCTGACCTGTAGCAAGC
CAAATTCAAACACTGACATTCTGTGGTACCAGGGCCTTTTGTGGTACATA
CACCTGTAGGAAATCATTTGAAAAGCATAGTTTGGTAAAGCTTTAAAACT
TATGATCTACACATAGAAATGATATAATTCAATTGAATGGAGAACCCAGA
AAGTCGAGGAAGTTATGATGTTGAGTTGGTAAATGAAGAGATGCAGCATG
ACAATACGTGCTCAGTTTTATTTTACGCAAGCctatgcaaaataaagaat
GTGGTCatcgtttttgaaaatcaagcATTGCTGTTTAAAGAAAAGGTACT
GGATGGTTAGAAAAACTTTGGTTTGGTAACGCCTTTGAGCCGAATGGATA
AAAATGTGAACTTGAATATGATATCATAAGAAAGAGGAaggtctaactta
aattttgaattgTTACTGTTCAAATTTGGTTCAATCAATAGTTTTTGAGT
AATcggtttttaaaataaaattttactaTTTCAAAATGTGCCAAAATGGT
AGAAAAATAGATGATCAAGTTAACAATGAGAAAGAGATGGTACTGAAATA
GACATGCCTAATGATTGTACTGGCACATATATAAATAAAAGCTTATTCGT
TGGAAAAGCATTATTAACTCTGGCACACTCAANACTGAAATAGACATGCC
TAATGATTGTACTGGCACATATATAAATAAAAGCTTATTCGTTGGAAAAG
CATTATTAACTCTGGCACACTCAACACAAACAGGAGACAAACCCACACAC
ACTGGTCCTTCGTAAGATGAAGTATTTTGATGGAGAGATTGAGATTTTTA
CACACATGCCTCTTTCCAATAACATTCTTTTTCATAAAACTTTTCTAGAT
AACAATTCCATTTTCTTTGAGTAAAAATGTAGAAATGGGTCAAAATTAGT
TTTCTTCATGTTTTGCAGGAACTGATGCAAGAGCAAGGTTGTGGACACAA
ATTCTGCAAATGTTTTTTGGCCGTCCGTAAAGTTCTCAAATCTATTTAat
aagatatctttttatttacaGCATCTTAAACTCAGTGTTTTGATAAGAAA
CCGAAAGTAATATGTCATTTCTTCTCAACAACCATGATAATATAGTGCAA
CCCATAATTATATGCTTGTCTGTTATTTTCAGGAAGTGCCCAGCTGAccc
tttttgttttatttcaagtAAATATTGATGATTCTTTCTATTTGCTATTT
TCACTGTTCTTGTTTTTGTTCAGAAATTCAGAAATCA

Coding sequence (CDS) from alignment at scaffold_218:644466..650902+

>TCONS_00052606 ID=TCONS_00052606|Name=TCONS_00052606|organism=Clytia hemisphaerica|type=CDS|length=5100bp|location=Sequence derived from alignment at scaffold_218:644466..650902+ (Clytia hemisphaerica)
AGTGATAAAGGTCATTATGTCTGCCCTGAAGACAGAAGTGAAATGAAGtT
ATTTCCTGATAAGGGAAGAGAACGAGAAATCCTCAGCAAGATTGTGAAAT
GTAACAATGCTGATAATGGTTGTCAATGGACCAAGGAGTTGCGCCAATTA
AAAGATCACCTTGCAAGTGATTGTTTTTACAATCTTGTCGAGTGTCCTCG
GAATGAATGTAATGAAGAAGTTATTGCGCATCATTTAGCTGATCATATGA
GTGATGAATGTGAATATAGAAGATTGTGGTGTCCATTCTGCTTTCAAAGA
TACTCTTTCAACTTAGAGGAGatgGAAGATCATCTTTTAGATGAGTGTAC
TAGAAGGCTCATTCCATGTCAGTTTGCTAACCTAGGTTGTGAAGAAcagg
tacatatgGAGAATTTCATCAAACATGAAACCGATTCTGCCCCATACCAT
CTAAAATTGGCTATAAATAAAATATCAGAGCAAGATGAAATGGTTCAGTT
ACAAAATGAGAAGTTAGAATCTCAAGAGAGCAAAATTTCAGAATTAGAAC
TTTCCCAGAAAAATCTCAGCAACAGTTTAACTCAAATTCAAAACAGGATT
CCTGCACCAATATTTAGTAGTAATTCTTTCATCCTAAAAATACATGACTT
TGATAAAGAACTTGACAGAGCTAAAAAGGGAATTCCAATGTACCGATGGT
TTTATACTTCAAGGTTTCACAATCTGTTAATATATATTTACCTCAAAGGA
GCAGATAAAGATTACGTTGGTCTTTATTTTTCTACAACACAGGGAAATTT
TGATGACATGATTGAATGGCCAATGGTTGCTCGTATATGCAGTTGGACAC
AGAATGGTGGGAAATTATCCAATCCTCACATACTTGATACTTCACAATAT
AAAGAAAACTTTGGGAATGTGACAACTAAAGGAGGCCAAGGTTTCCCTAG
ATTTACTAGAATTGATGAAGTTAAAGAAGATACACTGATTGTGAAAATCA
AGTTAGCCTATAAGTATTAAAGTGATAAAGGTCATTATGTCTGCCCTGAA
GACAGAAGTGAAATGAAGtTATTTCCTGATAAGGGAAGAGAACGAGAAAT
CCTCAGCAAGATTGTGAAATGTAACAATGCTGATAATGGTTGTCAATGGA
CCAAGGAGTTGCGCCAATTAAAAGATCACCTTGCAAGTGATTGTTTTTAC
AATCTTGTCGAGTGTCCTCGGAATGAATGTAATGAAGAAGTTATTGCGCA
TCATTTAGCTGATCATATGAGTGATGAATGTGAATATAGAAGATTGTGGT
GTCCATTCTGCTTTCAAAGATACTCTTTCAACTTAGAGGAGatgGAAGAT
CATCTTTTAGATGAGTGTACTAGAAGGCTCATTCCATGTCAGTTTGCTAA
CCTAGGTTGTGAAGAAcaggtacatatgGAGAATTTCATCAAACATGAAA
CCGATTCTGCCCCATACCATCTAAAATTGGCTATAAATAAAATATCAGAG
CAAGATGAAATGGTTCAGTTACAAAATGAGAAGTTAGAATCTCAAGAGAG
CAAAATTTCAGAATTAGAACTTTCCCAGAAAAATCTCAGCAACAGTTTAA
CTCAAATTCAAAACAGGATTCCTGCACCAATATTTAGTAGTAATTCTTTC
ATCCTAAAAATACATGACTTTGATAAAGAACTTGACAGAGCTAAAAAGGG
AATTCCAATGTACCGATGGTTTTATACTTCAAGGTTTCACAATCTGTTAA
TATATATTTACCTCAAAGGAGCAGATAAAGATTACGTTGGTCTTTATTTT
TCTACAACACAGGGAAATTTTGATGACATGATTGAATGGCCAATGGTTGC
TCGTATATGCAGTTGGACACAGAATGGTGGGAAATTATCCAATCCTCACA
TACTTGATACTTCACAATATAAAGAAAACTTTGGGAATGTGACAACTAAA
GGAGGCCAAGGTTTCCCTAGATTTACTAGAATTGATGAAGTTAAAGAAGA
TACACTGATTGTGAAAATCAAGTTAGCCTATAAGTATTAAAGTGATAAAG
GTCATTATGTCTGCCCTGAAGACAGAAGTGAAATGAAGtTATTTCCTGAT
AAGGGAAGAGAACGAGAAATCCTCAGCAAGATTGTGAAATGTAACAATGC
TGATAATGGTTGTCAATGGACCAAGGAGTTGCGCCAATTAAAAGATCACC
TTGCAAGTGATTGTTTTTACAATCTTGTCGAGTGTCCTCGGAATGAATGT
AATGAAGAAGTTATTGCGCATCATTTAGCTGATCATATGAGTGATGAATG
TGAATATAGAAGATTGTGGTGTCCATTCTGCTTTCAAAGATACTCTTTCA
ACTTAGAGGAGatgGAAGATCATCTTTTAGATGAGTGTACTAGAAGGCTC
ATTCCATGTCAGTTTGCTAACCTAGGTTGTGAAGAAcaggtacatatgGA
GAATTTCATCAAACATGAAACCGATTCTGCCCCATACCATCTAAAATTGG
CTATAAATAAAATATCAGAGCAAGATGAAATGGTTCAGTTACAAAATGAG
AAGTTAGAATCTCAAGAGAGCAAAATTTCAGAATTAGAACTTTCCCAGAA
AAATCTCAGCAACAGTTTAACTCAAATTCAAAACAGGATTCCTGCACCAA
TATTTAGTAGTAATTCTTTCATCCTAAAAATACATGACTTTGATAAAGAA
CTTGACAGAGCTAAAAAGGGAATTCCAATGTACCGATGGTTTTATACTTC
AAGGTTTCACAATCTGTTAATATATATTTACCTCAAAGGAGCAGATAAAG
ATTACGTTGGTCTTTATTTTTCTACAACACAGGGAAATTTTGATGACATG
ATTGAATGGCCAATGGTTGCTCGTATATGCAGTTGGACACAGAATGGTGG
GAAATTATCCAATCCTCACATACTTGATACTTCACAATATAAAGAAAACT
TTGGGAATGTGACAACTAAAGGAGGCCAAGGTTTCCCTAGATTTACTAGA
ATTGATGAAGTTAAAGAAGATACACTGATTGTGAAAATCAAGTTAGCCTA
TAAGTATTAAAGTGATAAAGGTCATTATGTCTGCCCTGAAGACAGAAGTG
AAATGAAGtTATTTCCTGATAAGGGAAGAGAACGAGAAATCCTCAGCAAG
ATTGTGAAATGTAACAATGCTGATAATGGTTGTCAATGGACCAAGGAGTT
GCGCCAATTAAAAGATCACCTTGCAAGTGATTGTTTTTACAATCTTGTCG
AGTGTCCTCGGAATGAATGTAATGAAGAAGTTATTGCGCATCATTTAGCT
GATCATATGAGTGATGAATGTGAATATAGAAGATTGTGGTGTCCATTCTG
CTTTCAAAGATACTCTTTCAACTTAGAGGAGatgGAAGATCATCTTTTAG
ATGAGTGTACTAGAAGGCTCATTCCATGTCAGTTTGCTAACCTAGGTTGT
GAAGAAcaggtacatatgGAGAATTTCATCAAACATGAAACCGATTCTGC
CCCATACCATCTAAAATTGGCTATAAATAAAATATCAGAGCAAGATGAAA
TGGTTCAGTTACAAAATGAGAAGTTAGAATCTCAAGAGAGCAAAATTTCA
GAATTAGAACTTTCCCAGAAAAATCTCAGCAACAGTTTAACTCAAATTCA
AAACAGGATTCCTGCACCAATATTTAGTAGTAATTCTTTCATCCTAAAAA
TACATGACTTTGATAAAGAACTTGACAGAGCTAAAAAGGGAATTCCAATG
TACCGATGGTTTTATACTTCAAGGTTTCACAATCTGTTAATATATATTTA
CCTCAAAGGAGCAGATAAAGATTACGTTGGTCTTTATTTTTCTACAACAC
AGGGAAATTTTGATGACATGATTGAATGGCCAATGGTTGCTCGTATATGC
AGTTGGACACAGAATGGTGGGAAATTATCCAATCCTCACATACTTGATAC
TTCACAATATAAAGAAAACTTTGGGAATGTGACAACTAAAGGAGGCCAAG
GTTTCCCTAGATTTACTAGAATTGATGAAGTTAAAGAAGATACACTGATT
GTGAAAATCAAGTTAGCCTATAAGTATTAAAGTGATAAAGGTCATTATGT
CTGCCCTGAAGACAGAAGTGAAATGAAGtTATTTCCTGATAAGGGAAGAG
AACGAGAAATCCTCAGCAAGATTGTGAAATGTAACAATGCTGATAATGGT
TGTCAATGGACCAAGGAGTTGCGCCAATTAAAAGATCACCTTGCAAGTGA
TTGTTTTTACAATCTTGTCGAGTGTCCTCGGAATGAATGTAATGAAGAAG
TTATTGCGCATCATTTAGCTGATCATATGAGTGATGAATGTGAATATAGA
AGATTGTGGTGTCCATTCTGCTTTCAAAGATACTCTTTCAACTTAGAGGA
GatgGAAGATCATCTTTTAGATGAGTGTACTAGAAGGCTCATTCCATGTC
AGTTTGCTAACCTAGGTTGTGAAGAAcaggtacatatgGAGAATTTCATC
AAACATGAAACCGATTCTGCCCCATACCATCTAAAATTGGCTATAAATAA
AATATCAGAGCAAGATGAAATGGTTCAGTTACAAAATGAGAAGTTAGAAT
CTCAAGAGAGCAAAATTTCAGAATTAGAACTTTCCCAGAAAAATCTCAGC
AACAGTTTAACTCAAATTCAAAACAGGATTCCTGCACCAATATTTAGTAG
TAATTCTTTCATCCTAAAAATACATGACTTTGATAAAGAACTTGACAGAG
CTAAAAAGGGAATTCCAATGTACCGATGGTTTTATACTTCAAGGTTTCAC
AATCTGTTAATATATATTTACCTCAAAGGAGCAGATAAAGATTACGTTGG
TCTTTATTTTTCTACAACACAGGGAAATTTTGATGACATGATTGAATGGC
CAATGGTTGCTCGTATATGCAGTTGGACACAGAATGGTGGGAAATTATCC
AATCCTCACATACTTGATACTTCACAATATAAAGAAAACTTTGGGAATGT
GACAACTAAAGGAGGCCAAGGTTTCCCTAGATTTACTAGAATTGATGAAG
TTAAAGAAGATACACTGATTGTGAAAATCAAGTTAGCCTATAAGTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033255XLOC_033255Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052606-exon-scaffold_218-1491911889:644466..644514TCONS_00052606-exon-scaffold_218-1491911889:644466..644514Clytia hemisphaericaexon
TCONS_00052606-exon-scaffold_218-1510915933:644466..644514TCONS_00052606-exon-scaffold_218-1510915933:644466..644514Clytia hemisphaericaexon
TCONS_00052606-exon-scaffold_218-1575043694:644466..644514TCONS_00052606-exon-scaffold_218-1575043694:644466..644514Clytia hemisphaericaexon
TCONS_00052606-exon-scaffold_218-1491911889:644621..644725TCONS_00052606-exon-scaffold_218-1491911889:644621..644725Clytia hemisphaericaexon
TCONS_00052606-exon-scaffold_218-1510915933:644621..644725TCONS_00052606-exon-scaffold_218-1510915933:644621..644725Clytia hemisphaericaexon
TCONS_00052606-exon-scaffold_218-1575043694:644621..644725TCONS_00052606-exon-scaffold_218-1575043694:644621..644725Clytia hemisphaericaexon
TCONS_00052606-exon-scaffold_218-1491911889:644870..645037TCONS_00052606-exon-scaffold_218-1491911889:644870..645037Clytia hemisphaericaexon
TCONS_00052606-exon-scaffold_218-1510915933:644870..645037TCONS_00052606-exon-scaffold_218-1510915933:644870..645037Clytia hemisphaericaexon
TCONS_00052606-exon-scaffold_218-1575043694:644870..645037TCONS_00052606-exon-scaffold_218-1575043694:644870..645037Clytia hemisphaericaexon
TCONS_00052606-exon-scaffold_218-1491911889:646639..646716TCONS_00052606-exon-scaffold_218-1491911889:646639..646716Clytia hemisphaericaexon
TCONS_00052606-exon-scaffold_218-1510915933:646639..646716TCONS_00052606-exon-scaffold_218-1510915933:646639..646716Clytia hemisphaericaexon
TCONS_00052606-exon-scaffold_218-1575043694:646639..646716TCONS_00052606-exon-scaffold_218-1575043694:646639..646716Clytia hemisphaericaexon
TCONS_00052606-exon-scaffold_218-1491911889:646863..650654TCONS_00052606-exon-scaffold_218-1491911889:646863..650654Clytia hemisphaericaexon
TCONS_00052606-exon-scaffold_218-1510915933:646863..650654TCONS_00052606-exon-scaffold_218-1510915933:646863..650654Clytia hemisphaericaexon
TCONS_00052606-exon-scaffold_218-1575043694:646863..650654TCONS_00052606-exon-scaffold_218-1575043694:646863..650654Clytia hemisphaericaexon
TCONS_00052606-exon-scaffold_218-1491911889:650685..650902TCONS_00052606-exon-scaffold_218-1491911889:650685..650902Clytia hemisphaericaexon
TCONS_00052606-exon-scaffold_218-1510915933:650685..650902TCONS_00052606-exon-scaffold_218-1510915933:650685..650902Clytia hemisphaericaexon
TCONS_00052606-exon-scaffold_218-1575043694:650685..650902TCONS_00052606-exon-scaffold_218-1575043694:650685..650902Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052606-proteinTCONS_00052606-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:644466..650902 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.97689	2.8494	1.8984	1.77734	0.787809	0.539968	1.10746	0.957503	0.844976	0.83011	0.787151	0.879479	0.83125	0.629947	1.0808	0.867578	0.951211	0.88737	0.439888	0.422734	0.916103	0.683769	1.66085	1.64307	2.79176	3.44858	1.03061	0.753859	0.787363	0.954998
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00052606 vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.009e-22
Identity = 101/415 (24.34%), Postives = 176/415 (42.41%), Query Frame = 2 
Query:    5 DKGHYVCPEDRS---EMKLFPDKGREREILSKIVKCNNADNGCQWTKELRQLKDHLASDCFYNLVECPRNECNEEVIAHHLADHMSDECEYRRLWCPFCFQRYSFN------------------------LEEMEDHLLDECTRRLIPCQFANLGCEEQVHMENFIKHETDSAPYHLKL---AINKIS--------------------------EQDEMVQLQNEKLESQESKISELELSQKNLSNSLTQIQNRIPAPIFSSNSFILKIHDFDKELDRAKKGIPMY---RWFYTSRFHNLL---IYIYLKGADK--DYVGLYFSTTQGNFDDMIEWPM--VARICSWTQNGGKLSNPH--ILDTSQYKENFGNVT---TKGGQGFPRFTRIDE------VKEDTLIVKIKLAYKY 1018
            D GH  CP D     E +LFPD   +REILS +VKC N   GC    ELR L+DH A  C + L++CP  +C       H+  H+  +C  R++ C  C    +F                          E+M +H   +C    IPC F+  GC E++   +  +H  ++   H+++   A++ +S                           QD  ++    K+E+Q   +SEL+ + + L + + +I+ +       +  +I KI +F   L   ++  P+      FYT +    L   +++ L  A +  +Y+ L+  T QG +D  + WP     R+    Q+   +   H  I+D       F   T      G G+  F  ++       +K+DTL+V+ +++ ++
Sbjct:  100 DAGHK-CPVDNEILLENQLFPDNFAKREILSLMVKCPN--EGCLHKMELRHLEDHQA-HCEFALMDCP--QCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVICEYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELKRTIRTLEDKVAEIEAQQ-----CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRF 503
The following BLAST results are available for this feature:
BLAST of TCONS_00052606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF61.009e-2224.34TNF receptor-associated factor 6 OS=Homo sapiens G... [more]
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