TCONS_00052548 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052548
Unique NameTCONS_00052548
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length451

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052548 ID=TCONS_00052548|Name=TCONS_00052548|organism=Clytia hemisphaerica|type=transcript|length=451bp
GCGGCTTTTAACATAATTTGGCCTTAAAGATTTGTCAATTATGTGAAACT
TAGGAGGATATCAGTTACTTCAAAAAAGCTTAAATCTATTGACACCGTAT
TGATGAAAATCAATAAGCTAGAAAAGTTATAATTTTCCAACAACCATGCA
CCATCTTTTTTATCTGTATTCACGTAAAGCGCAAAGATAACCATAAGACG
TAAACGTAGACGTGGTAGTACCAAAACGGTTCTACATAGATACAGTAACG
TGCAGTCAcatgaaaacctgaaaaaattGACAGCGAGAAgataaataatt
aaaatattttcagtcaAAAGGAACCAAAGTTCACTACAGGGACACaaaaa
aattccttaaaaataGTAACAGCAGTGAGATTTGGCCGAAATATCACCAG
AACAGAATTACAGTTTGGTCTGTCAGAACTTCTGTATTTCTAGCTCAGTA
T
Run BLAST on NCBI

transcript from alignment at scaffold_217:256158..256608

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052548 ID=TCONS_00052548|Name=TCONS_00052548|organism=Clytia hemisphaerica|type=transcript|length=451bp|location=Sequence derived from alignment at scaffold_217:256158..256608 (Clytia hemisphaerica)
ATACTGAGCTAGAAATACAGAAGTTCTGACAGACCAAACTGTAATTCTGT
TCTGGTGATATTTCGGCCAAATCTCACTGCTGTTACtatttttaaggaat
ttttttGTGTCCCTGTAGTGAACTTTGGTTCCTTTtgactgaaaatattt
taattatttatcTTCTCGCTGTCaattttttcaggttttcatgTGACTGC
ACGTTACTGTATCTATGTAGAACCGTTTTGGTACTACCACGTCTACGTTT
ACGTCTTATGGTTATCTTTGCGCTTTACGTGAATACAGATAAAAAAGATG
GTGCATGGTTGTTGGAAAATTATAACTTTTCTAGCTTATTGATTTTCATC
AATACGGTGTCAATAGATTTAAGCTTTTTTGAAGTAACTGATATCCTCCT
AAGTTTCACATAATTGACAAATCTTTAAGGCCAAATTATGTTAAAAGCCG
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033232XLOC_033232Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052548-exon-scaffold_217-1491911889:256158..256608TCONS_00052548-exon-scaffold_217-1491911889:256158..256608Clytia hemisphaericaexon
TCONS_00052548-exon-scaffold_217-1510915933:256158..256608TCONS_00052548-exon-scaffold_217-1510915933:256158..256608Clytia hemisphaericaexon
TCONS_00052548-exon-scaffold_217-1575043694:256158..256608TCONS_00052548-exon-scaffold_217-1575043694:256158..256608Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_217supercontigscaffold_217:256158..256608 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.251484	0.571841	0.663962	0	0	0.156226	0.240547	0.176453	0	0.153023	0	0	6.06228	2.67674	0	0.0211361	0.110054	0.436873	11.9178	9.52654	0	0.310093	0	0.196571	0	0	0.644771	0.262949	0.753593	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052548 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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